data_YSJ # _chem_comp.id YSJ _chem_comp.name "5-(3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H17 Cl2 F N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-30 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 551.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSJ C10 C1 C 0 1 N N N -25.612 -4.859 -23.357 6.363 1.374 -2.806 C10 YSJ 1 YSJ C11 C2 C 0 1 N N N -21.151 -4.841 -25.870 3.221 -1.220 0.179 C11 YSJ 2 YSJ C12 C3 C 0 1 Y N N -18.835 -5.036 -26.430 2.294 -2.935 1.551 C12 YSJ 3 YSJ C14 C4 C 0 1 Y N N -16.235 -5.307 -25.682 2.518 -5.357 2.773 C14 YSJ 4 YSJ C15 C5 C 0 1 Y N N -17.038 -6.439 -25.778 1.996 -5.301 1.493 C15 YSJ 5 YSJ C16 C6 C 0 1 Y N N -18.373 -6.309 -26.155 1.878 -4.073 0.864 C16 YSJ 6 YSJ C18 C7 C 0 1 Y N N -21.757 -5.009 -30.872 -1.457 0.757 0.308 C18 YSJ 7 YSJ C19 C8 C 0 1 Y N N -22.051 -4.790 -32.205 -2.585 1.531 0.524 C19 YSJ 8 YSJ C20 C9 C 0 1 N N N -20.349 -6.259 -33.146 -3.824 -0.124 -0.651 C20 YSJ 9 YSJ C22 C10 C 0 1 Y N N -19.694 -6.032 -35.580 -5.515 -1.573 -1.797 C22 YSJ 10 YSJ C23 C11 C 0 1 Y N N -19.486 -6.536 -36.862 -6.812 -1.844 -2.195 C23 YSJ 11 YSJ C24 C12 C 0 1 Y N N -19.702 -7.885 -37.110 -7.827 -0.956 -1.891 C24 YSJ 12 YSJ C26 C13 C 0 1 Y N N -20.328 -8.208 -34.799 -6.252 0.470 -0.787 C26 YSJ 13 YSJ C27 C14 C 0 1 Y N N -22.742 -3.626 -32.557 -2.483 2.729 1.220 C27 YSJ 14 YSJ C1 C15 C 0 1 Y N N -23.108 -2.692 -31.608 -1.254 3.154 1.698 C1 YSJ 15 YSJ C13 C16 C 0 1 Y N N -17.991 -3.930 -26.317 2.808 -3.072 2.833 C13 YSJ 16 YSJ C17 C17 C 0 1 N N N -20.467 -4.582 -28.100 1.101 -0.923 1.159 C17 YSJ 17 YSJ C2 C18 C 0 1 Y N N -22.798 -2.913 -30.275 -0.125 2.388 1.486 C2 YSJ 18 YSJ C21 C19 C 0 1 Y N N -20.103 -6.858 -34.540 -5.236 -0.417 -1.090 C21 YSJ 19 YSJ C25 C20 C 0 1 Y N N -20.119 -8.719 -36.080 -7.546 0.202 -1.190 C25 YSJ 20 YSJ C3 C21 C 0 1 Y N N -22.128 -4.075 -29.920 -0.221 1.184 0.788 C3 YSJ 21 YSJ C4 C22 C 0 1 N N N -21.781 -4.342 -28.474 0.989 0.357 0.565 C4 YSJ 22 YSJ C5 C23 C 0 1 N N N -22.797 -4.373 -27.525 2.020 0.825 -0.231 C5 YSJ 23 YSJ C6 C24 C 0 1 N N N -22.475 -4.614 -26.200 3.156 0.014 -0.423 C6 YSJ 24 YSJ C7 C25 C 0 1 N N N -23.581 -4.665 -25.142 4.277 0.490 -1.271 C7 YSJ 25 YSJ C8 C26 C 0 1 N N N -23.456 -4.108 -23.869 5.036 1.694 -0.909 C8 YSJ 26 YSJ C9 C27 C 0 1 N N N -24.762 -5.327 -25.459 4.628 -0.179 -2.405 C9 YSJ 27 YSJ F1 F1 F 0 1 N N N -23.085 -3.333 -33.835 -3.585 3.483 1.430 F1 YSJ 28 YSJ N1 N1 N 0 1 N N N -24.476 -4.215 -23.008 6.055 2.081 -1.705 N1 YSJ 29 YSJ N2 N2 N 0 1 N N N -25.751 -5.406 -24.567 5.676 0.274 -3.156 N2 YSJ 30 YSJ N3 N3 N 0 1 N N N -20.202 -4.819 -26.813 2.200 -1.671 0.954 N3 YSJ 31 YSJ N4 N4 N 0 1 Y N N -16.710 -4.080 -25.947 2.903 -4.260 3.396 N4 YSJ 32 YSJ O1 O1 O 0 1 N N N -22.293 -3.444 -23.476 4.759 2.324 0.095 O1 YSJ 33 YSJ O2 O2 O 0 1 N N N -26.676 -4.971 -22.453 7.285 1.743 -3.507 O2 YSJ 34 YSJ O3 O3 O 0 1 N N N -19.411 -4.579 -29.035 0.197 -1.349 1.859 O3 YSJ 35 YSJ O4 O4 O 0 1 N N N -21.674 -5.753 -33.156 -3.793 1.117 0.056 O4 YSJ 36 YSJ CL1 CL1 CL 0 0 N N N -23.983 -1.238 -32.179 -1.134 4.653 2.566 CL1 YSJ 37 YSJ CL2 CL2 CL 0 0 N N N -19.411 -4.305 -35.240 -4.239 -2.687 -2.178 CL2 YSJ 38 YSJ H6 H1 H 0 1 N N N -20.881 -5.038 -24.843 4.093 -1.841 0.031 H6 YSJ 39 YSJ H8 H2 H 0 1 N N N -15.202 -5.418 -25.386 2.612 -6.312 3.268 H8 YSJ 40 YSJ H9 H3 H 0 1 N N N -16.628 -7.414 -25.561 1.684 -6.205 0.991 H9 YSJ 41 YSJ H10 H4 H 0 1 N N N -19.021 -7.169 -26.229 1.473 -4.000 -0.135 H10 YSJ 42 YSJ H11 H5 H 0 1 N N N -21.238 -5.908 -30.574 -1.536 -0.176 -0.229 H11 YSJ 43 YSJ H13 H6 H 0 1 N N N -20.244 -7.036 -32.374 -3.474 -0.924 0.003 H13 YSJ 44 YSJ H12 H7 H 0 1 N N N -19.633 -5.447 -32.949 -3.177 -0.061 -1.525 H12 YSJ 45 YSJ H14 H8 H 0 1 N N N -19.159 -5.882 -37.657 -7.031 -2.748 -2.743 H14 YSJ 46 YSJ H15 H9 H 0 1 N N N -19.546 -8.285 -38.101 -8.840 -1.168 -2.202 H15 YSJ 47 YSJ H17 H10 H 0 1 N N N -20.665 -8.860 -34.007 -6.034 1.373 -0.235 H17 YSJ 48 YSJ H7 H11 H 0 1 N N N -18.373 -2.943 -26.530 3.134 -2.196 3.375 H7 YSJ 49 YSJ H1 H12 H 0 1 N N N -23.075 -2.190 -29.522 0.832 2.722 1.859 H1 YSJ 50 YSJ H16 H13 H 0 1 N N N -20.282 -9.769 -36.272 -8.340 0.895 -0.953 H16 YSJ 51 YSJ H2 H14 H 0 1 N N N -23.824 -4.211 -27.818 1.954 1.797 -0.698 H2 YSJ 52 YSJ H4 H15 H 0 1 N N N -24.879 -5.780 -26.433 4.090 -1.068 -2.701 H4 YSJ 53 YSJ H3 H16 H 0 1 N N N -24.396 -3.814 -22.096 6.568 2.874 -1.481 H3 YSJ 54 YSJ H5 H17 H 0 1 N N N -26.600 -5.877 -24.806 5.930 -0.209 -3.958 H5 YSJ 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSJ C24 C23 DOUB Y N 1 YSJ C24 C25 SING Y N 2 YSJ C23 C22 SING Y N 3 YSJ C25 C26 DOUB Y N 4 YSJ C22 CL2 SING N N 5 YSJ C22 C21 DOUB Y N 6 YSJ C26 C21 SING Y N 7 YSJ C21 C20 SING N N 8 YSJ F1 C27 SING N N 9 YSJ O4 C20 SING N N 10 YSJ O4 C19 SING N N 11 YSJ C27 C19 DOUB Y N 12 YSJ C27 C1 SING Y N 13 YSJ C19 C18 SING Y N 14 YSJ CL1 C1 SING N N 15 YSJ C1 C2 DOUB Y N 16 YSJ C18 C3 DOUB Y N 17 YSJ C2 C3 SING Y N 18 YSJ C3 C4 SING N N 19 YSJ O3 C17 DOUB N N 20 YSJ C4 C17 SING N N 21 YSJ C4 C5 DOUB N N 22 YSJ C17 N3 SING N N 23 YSJ C5 C6 SING N N 24 YSJ N3 C12 SING N N 25 YSJ N3 C11 SING N N 26 YSJ C12 C13 DOUB Y N 27 YSJ C12 C16 SING Y N 28 YSJ C13 N4 SING Y N 29 YSJ C6 C11 DOUB N N 30 YSJ C6 C7 SING N N 31 YSJ C16 C15 DOUB Y N 32 YSJ N4 C14 DOUB Y N 33 YSJ C15 C14 SING Y N 34 YSJ C9 C7 DOUB N N 35 YSJ C9 N2 SING N N 36 YSJ C7 C8 SING N N 37 YSJ N2 C10 SING N N 38 YSJ C8 O1 DOUB N N 39 YSJ C8 N1 SING N N 40 YSJ C10 N1 SING N N 41 YSJ C10 O2 DOUB N N 42 YSJ C11 H6 SING N N 43 YSJ C14 H8 SING N N 44 YSJ C15 H9 SING N N 45 YSJ C16 H10 SING N N 46 YSJ C18 H11 SING N N 47 YSJ C20 H13 SING N N 48 YSJ C20 H12 SING N N 49 YSJ C23 H14 SING N N 50 YSJ C24 H15 SING N N 51 YSJ C26 H17 SING N N 52 YSJ C13 H7 SING N N 53 YSJ C2 H1 SING N N 54 YSJ C25 H16 SING N N 55 YSJ C5 H2 SING N N 56 YSJ C9 H4 SING N N 57 YSJ N1 H3 SING N N 58 YSJ N2 H5 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSJ SMILES ACDLabs 12.01 "Clc1ccccc1COc1cc(cc(Cl)c1F)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O" YSJ InChI InChI 1.03 "InChI=1S/C27H17Cl2FN4O4/c28-21-6-2-1-4-15(21)14-38-23-10-16(9-22(29)24(23)30)19-8-17(20-12-32-27(37)33-25(20)35)13-34(26(19)36)18-5-3-7-31-11-18/h1-13H,14H2,(H2,32,33,35,37)" YSJ InChIKey InChI 1.03 FBYZCSUBKCAJAK-UHFFFAOYSA-N YSJ SMILES_CANONICAL CACTVS 3.385 "Fc1c(Cl)cc(cc1OCc2ccccc2Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YSJ SMILES CACTVS 3.385 "Fc1c(Cl)cc(cc1OCc2ccccc2Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YSJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)COc2cc(cc(c2F)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)Cl" YSJ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)COc2cc(cc(c2F)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSJ "SYSTEMATIC NAME" ACDLabs 12.01 "5-(3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" YSJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[(2-chlorophenyl)methoxy]-4-fluoranyl-phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSJ "Create component" 2021-03-30 RCSB YSJ "Initial release" 2021-06-30 RCSB ##