data_YSK # _chem_comp.id YSK _chem_comp.name "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(5-methyl-1,2,4-oxadiazol-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 F N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.475 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSK C10 C1 C 0 1 Y N N N N N -21.657 -14.097 11.056 -1.256 1.853 -1.276 C10 YSK 1 YSK C11 C2 C 0 1 Y N N N N N -21.945 -12.723 10.987 -1.134 0.512 -0.901 C11 YSK 2 YSK C12 C3 C 0 1 Y N N N N N -22.491 -12.077 12.090 -2.283 -0.291 -0.780 C12 YSK 3 YSK C14 C4 C 0 1 Y N N N N N -22.283 -10.587 10.521 -0.508 -1.594 -0.278 C14 YSK 4 YSK C15 C5 C 0 1 N N N N N N -22.410 -9.251 9.837 0.274 -2.772 0.108 C15 YSK 5 YSK C18 C6 C 0 1 Y N N N N N -21.814 -11.763 9.969 0.010 -0.346 -0.572 C18 YSK 6 YSK C19 C7 C 0 1 Y N N N N N -21.254 -11.925 8.570 1.437 0.046 -0.559 C19 YSK 7 YSK C20 C8 C 0 1 Y N N N N N -20.423 -10.940 8.062 2.330 -0.527 -1.466 C20 YSK 8 YSK C21 C9 C 0 1 Y N N N N N -19.886 -11.071 6.799 3.659 -0.159 -1.449 C21 YSK 9 YSK C22 C10 C 0 1 Y N N N N N -20.156 -12.178 6.021 4.109 0.779 -0.536 C22 YSK 10 YSK C23 C11 C 0 1 N N N N N N -19.583 -12.313 4.605 5.564 1.172 -0.521 C23 YSK 11 YSK C25 C12 C 0 1 N N N N N N -20.841 -9.764 3.784 8.165 0.721 0.465 C25 YSK 12 YSK C01 C13 C 0 1 N N N N N N -28.098 -13.415 15.362 -7.600 0.124 3.164 C01 YSK 13 YSK C02 C14 C 0 1 Y N N N N N -26.885 -12.691 14.779 -6.878 0.308 1.854 C02 YSK 14 YSK C04 C15 C 0 1 Y N N N N N -24.851 -12.025 14.402 -5.688 0.026 0.127 C04 YSK 15 YSK C05 C16 C 0 1 N N S N N N -23.333 -11.942 14.460 -4.777 -0.575 -0.913 C05 YSK 16 YSK C06 C17 C 0 1 N N N N N N -22.748 -12.372 15.793 -5.499 -0.619 -2.260 C06 YSK 17 YSK C07 C18 C 0 1 Y N N N N N -22.763 -12.756 13.276 -3.533 0.268 -1.037 C07 YSK 18 YSK C08 C19 C 0 1 Y N N N N N -22.477 -14.114 13.330 -3.630 1.591 -1.405 C08 YSK 19 YSK C09 C20 C 0 1 Y N N N N N -21.922 -14.785 12.236 -2.492 2.379 -1.522 C09 YSK 20 YSK C28 C21 C 0 1 Y N N N N N -20.988 -13.157 6.547 3.229 1.353 0.367 C28 YSK 21 YSK C30 C22 C 0 1 Y N N N N N -21.519 -13.043 7.821 1.894 0.995 0.356 C30 YSK 22 YSK F29 F1 F 0 1 N N N N N N -21.269 -14.258 5.830 3.675 2.267 1.256 F29 YSK 23 YSK N03 N1 N 0 1 Y N N N N N -25.621 -12.894 15.146 -6.111 -0.572 1.255 N03 YSK 24 YSK N13 N2 N 0 1 Y N N N N N -22.655 -10.781 11.783 -1.882 -1.551 -0.404 N13 YSK 25 YSK N31 N3 N 0 1 Y N N N N N -25.627 -11.286 13.571 -6.216 1.213 0.093 N31 YSK 26 YSK O16 O1 O 0 1 N N N N N N -22.744 -9.261 8.613 1.485 -2.697 0.189 O16 YSK 27 YSK O17 O2 O 0 1 N N N N N N -22.362 -8.180 10.496 -0.349 -3.939 0.372 O17 YSK 28 YSK O26 O3 O 0 1 N N N N N N -22.028 -12.152 3.517 6.011 0.299 1.927 O26 YSK 29 YSK O27 O4 O 0 1 N N N N N N -20.185 -11.648 2.046 6.448 -1.241 0.069 O27 YSK 30 YSK O32 O5 O 0 1 Y N N N N N -26.878 -11.743 13.854 -6.900 1.395 1.078 O32 YSK 31 YSK S24 S1 S 0 1 N N N N N N -20.714 -11.520 3.392 6.475 0.076 0.602 S24 YSK 32 YSK H101 H1 H 0 0 N N N N N N -21.236 -14.612 10.205 -0.376 2.473 -1.365 H101 YSK 33 YSK H201 H2 H 0 0 N N N N N N -20.195 -10.068 8.657 1.981 -1.260 -2.179 H201 YSK 34 YSK H211 H3 H 0 0 N N N N N N -19.243 -10.294 6.412 4.350 -0.603 -2.150 H211 YSK 35 YSK H231 H4 H 0 0 N N N N N N -19.472 -13.379 4.357 5.975 1.085 -1.526 H231 YSK 36 YSK H232 H5 H 0 0 N N N N N N -18.600 -11.822 4.561 5.657 2.203 -0.178 H232 YSK 37 YSK H252 H6 H 0 0 N N N N N N -21.241 -9.643 4.802 8.499 0.647 -0.569 H252 YSK 38 YSK H253 H7 H 0 0 N N N N N N -19.844 -9.302 3.724 8.182 1.765 0.779 H253 YSK 39 YSK H251 H8 H 0 0 N N N N N N -21.515 -9.276 3.065 8.828 0.139 1.104 H251 YSK 40 YSK H012 H9 H 0 0 N N N N N N -29.016 -13.031 14.893 -6.958 0.450 3.982 H012 YSK 41 YSK H013 H10 H 0 0 N N N N N N -28.010 -14.494 15.166 -8.514 0.718 3.161 H013 YSK 42 YSK H011 H11 H 0 0 N N N N N N -28.141 -13.242 16.447 -7.851 -0.928 3.296 H011 YSK 43 YSK H051 H12 H 0 0 N N N N N N -23.052 -10.891 14.298 -4.502 -1.586 -0.614 H051 YSK 44 YSK H062 H13 H 0 0 N N N N N N -23.185 -11.764 16.599 -6.399 -1.228 -2.170 H062 YSK 45 YSK H063 H14 H 0 0 N N N N N N -22.978 -13.433 15.969 -5.774 0.393 -2.559 H063 YSK 46 YSK H061 H15 H 0 0 N N N N N N -21.657 -12.230 15.777 -4.840 -1.053 -3.012 H061 YSK 47 YSK H081 H16 H 0 0 N N N N N N -22.688 -14.663 14.236 -4.600 2.021 -1.604 H081 YSK 48 YSK H091 H17 H 0 0 N N N N N N -21.699 -15.839 12.307 -2.586 3.416 -1.808 H091 YSK 49 YSK H301 H18 H 0 0 N N N N N N -22.139 -13.831 8.223 1.208 1.443 1.060 H301 YSK 50 YSK H131 H19 H 0 0 N N N N N N -23.001 -10.076 12.402 -2.477 -2.301 -0.251 H131 YSK 51 YSK H1 H20 H 0 1 N N N N N N -22.605 -7.452 9.936 0.250 -4.657 0.618 H1 YSK 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSK O27 S24 DOUB N N 1 YSK S24 O26 DOUB N N 2 YSK S24 C25 SING N N 3 YSK S24 C23 SING N N 4 YSK C23 C22 SING N N 5 YSK F29 C28 SING N N 6 YSK C22 C28 DOUB Y N 7 YSK C22 C21 SING Y N 8 YSK C28 C30 SING Y N 9 YSK C21 C20 DOUB Y N 10 YSK C30 C19 DOUB Y N 11 YSK C20 C19 SING Y N 12 YSK C19 C18 SING N N 13 YSK O16 C15 DOUB N N 14 YSK C15 O17 SING N N 15 YSK C15 C14 SING N N 16 YSK C18 C14 DOUB Y N 17 YSK C18 C11 SING Y N 18 YSK C14 N13 SING Y N 19 YSK C11 C10 DOUB Y N 20 YSK C11 C12 SING Y N 21 YSK C10 C09 SING Y N 22 YSK N13 C12 SING Y N 23 YSK C12 C07 DOUB Y N 24 YSK C09 C08 DOUB Y N 25 YSK C07 C08 SING Y N 26 YSK C07 C05 SING N N 27 YSK N31 O32 SING Y N 28 YSK N31 C04 DOUB Y N 29 YSK O32 C02 SING Y N 30 YSK C04 C05 SING N N 31 YSK C04 N03 SING Y N 32 YSK C05 C06 SING N N 33 YSK C02 N03 DOUB Y N 34 YSK C02 C01 SING N N 35 YSK C10 H101 SING N N 36 YSK C20 H201 SING N N 37 YSK C21 H211 SING N N 38 YSK C23 H231 SING N N 39 YSK C23 H232 SING N N 40 YSK C25 H252 SING N N 41 YSK C25 H253 SING N N 42 YSK C25 H251 SING N N 43 YSK C01 H012 SING N N 44 YSK C01 H013 SING N N 45 YSK C01 H011 SING N N 46 YSK C05 H051 SING N N 47 YSK C06 H062 SING N N 48 YSK C06 H063 SING N N 49 YSK C06 H061 SING N N 50 YSK C08 H081 SING N N 51 YSK C09 H091 SING N N 52 YSK C30 H301 SING N N 53 YSK N13 H131 SING N N 54 YSK O17 H1 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSK InChI InChI 1.06 "InChI=1S/C22H20FN3O5S/c1-11(21-24-12(2)31-26-21)15-5-4-6-16-18(20(22(27)28)25-19(15)16)13-7-8-14(17(23)9-13)10-32(3,29)30/h4-9,11,25H,10H2,1-3H3,(H,27,28)/t11-/m0/s1" YSK InChIKey InChI 1.06 KIPYOJMZYNOVAG-NSHDSACASA-N YSK SMILES_CANONICAL CACTVS 3.385 "C[C@H](c1noc(C)n1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YSK SMILES CACTVS 3.385 "C[CH](c1noc(C)n1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YSK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc(no1)[C@@H](C)c2cccc3c2[nH]c(c3c4ccc(c(c4)F)CS(=O)(=O)C)C(=O)O" YSK SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc(no1)C(C)c2cccc3c2[nH]c(c3c4ccc(c(c4)F)CS(=O)(=O)C)C(=O)O" # _pdbx_chem_comp_identifier.comp_id YSK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(5-methyl-1,2,4-oxadiazol-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSK "Create component" 2023-06-20 PDBE YSK "Initial release" 2024-07-10 RCSB #