data_YSM # _chem_comp.id YSM _chem_comp.name "5-(3-{3-chloro-5-[(3-fluorophenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H18 Cl F N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-30 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.908 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M8O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSM C1 C1 C 0 1 N N N -20.641 -4.348 -26.985 -1.255 -1.396 0.576 C1 YSM 1 YSM F1 F1 F 0 1 N N N -18.966 -6.292 -36.914 8.524 -1.987 -1.079 F1 YSM 2 YSM N1 N1 N 0 1 N N N -20.354 -4.519 -25.686 -2.454 -1.893 0.217 N1 YSM 3 YSM C2 C2 C 0 1 Y N N -18.969 -4.759 -25.269 -2.659 -3.278 0.239 C2 YSM 4 YSM C3 C3 C 0 1 Y N N -18.073 -3.687 -25.234 -3.546 -3.843 1.145 C3 YSM 5 YSM N3 N2 N 0 1 N N N -24.654 -3.720 -21.916 -5.362 2.753 -2.194 N3 YSM 6 YSM O3 O1 O 0 1 N N N -26.960 -3.804 -21.472 -7.377 3.535 -1.738 O3 YSM 7 YSM C4 C4 C 0 1 Y N N -16.340 -5.041 -24.482 -3.113 -5.960 0.344 C4 YSM 8 YSM O4 O2 O 0 1 N N N -21.801 -5.690 -32.040 3.755 0.519 -0.177 O4 YSM 9 YSM C5 C5 C 0 1 Y N N -17.199 -6.145 -24.494 -2.219 -5.470 -0.591 C5 YSM 10 YSM C6 C6 C 0 1 Y N N -18.523 -6.013 -24.886 -1.982 -4.107 -0.652 C6 YSM 11 YSM C7 C7 C 0 1 N N N -21.313 -4.429 -24.754 -3.467 -1.073 -0.167 C7 YSM 12 YSM C8 C8 C 0 1 N N N -22.637 -4.173 -25.104 -3.295 0.292 -0.198 C8 YSM 13 YSM C9 C9 C 0 1 N N N -23.786 -4.072 -24.092 -4.411 1.174 -0.619 C9 YSM 14 YSM C10 C10 C 0 1 N N N -23.592 -3.796 -22.742 -4.322 1.965 -1.853 C10 YSM 15 YSM C11 C11 C 0 1 N N N -25.102 -4.250 -24.532 -5.544 1.272 0.131 C11 YSM 16 YSM C12 C12 C 0 1 N N N -25.899 -3.896 -22.371 -6.454 2.813 -1.411 C12 YSM 17 YSM C13 C13 C 0 1 N N N -22.937 -4.012 -26.441 -2.053 0.847 0.171 C13 YSM 18 YSM C14 C14 C 0 1 N N N -21.938 -4.099 -27.386 -1.029 0.001 0.560 C14 YSM 19 YSM C15 C15 C 0 1 Y N N -22.280 -3.913 -28.860 0.289 0.552 0.955 C15 YSM 20 YSM C16 C16 C 0 1 Y N N -22.976 -2.784 -29.281 0.400 1.351 2.092 C16 YSM 21 YSM C17 C17 C 0 1 Y N N -23.285 -2.622 -30.632 1.630 1.862 2.458 C17 YSM 22 YSM C18 C18 C 0 1 Y N N -22.913 -3.580 -31.568 2.753 1.584 1.699 C18 YSM 23 YSM C20 C19 C 0 1 N N N -20.410 -5.668 -32.268 4.990 1.085 0.267 C20 YSM 24 YSM C21 C20 C 0 1 Y N N -20.113 -6.554 -33.470 6.095 0.679 -0.674 C21 YSM 25 YSM C22 C21 C 0 1 Y N N -20.326 -7.925 -33.381 6.395 1.468 -1.769 C22 YSM 26 YSM C23 C22 C 0 1 Y N N -20.088 -8.751 -34.473 7.408 1.097 -2.633 C23 YSM 27 YSM C24 C23 C 0 1 Y N N -19.631 -8.194 -35.656 8.124 -0.062 -2.402 C24 YSM 28 YSM C26 C24 C 0 1 Y N N -19.665 -5.993 -34.653 6.813 -0.477 -0.438 C26 YSM 29 YSM C19 C25 C 0 1 Y N N -22.221 -4.713 -31.135 2.649 0.790 0.565 C19 YSM 30 YSM C25 C26 C 0 1 Y N N -19.420 -6.822 -35.744 7.825 -0.853 -1.305 C25 YSM 31 YSM C27 C27 C 0 1 Y N N -21.905 -4.880 -29.785 1.421 0.268 0.194 C27 YSM 32 YSM N2 N3 N 0 1 Y N N -16.789 -3.837 -24.855 -3.742 -5.147 1.170 N2 YSM 33 YSM N4 N4 N 0 1 N N N -26.133 -4.158 -23.669 -6.553 2.098 -0.279 N4 YSM 34 YSM O1 O3 O 0 1 N N N -19.640 -4.429 -27.965 -0.363 -2.152 0.921 O1 YSM 35 YSM O2 O4 O 0 1 N N N -22.314 -3.598 -22.216 -3.329 1.910 -2.555 O2 YSM 36 YSM CL1 CL1 CL 0 0 N N N -24.163 -1.164 -31.146 1.768 2.857 3.874 CL1 YSM 37 YSM H1 H1 H 0 1 N N N -18.422 -2.706 -25.520 -4.080 -3.210 1.838 H1 YSM 38 YSM H6 H2 H 0 1 N N N -24.508 -3.529 -20.945 -5.321 3.283 -3.006 H6 YSM 39 YSM H2 H3 H 0 1 N N N -15.313 -5.161 -24.171 -3.301 -7.022 0.395 H2 YSM 40 YSM H3 H4 H 0 1 N N N -16.826 -7.113 -24.194 -1.712 -6.144 -1.266 H3 YSM 41 YSM H4 H5 H 0 1 N N N -19.188 -6.864 -24.892 -1.290 -3.697 -1.373 H4 YSM 42 YSM H5 H6 H 0 1 N N N -21.055 -4.557 -23.713 -4.419 -1.497 -0.450 H5 YSM 43 YSM H7 H7 H 0 1 N N N -25.294 -4.463 -25.573 -5.643 0.705 1.045 H7 YSM 44 YSM H9 H8 H 0 1 N N N -23.954 -3.818 -26.747 -1.904 1.917 0.151 H9 YSM 45 YSM H10 H9 H 0 1 N N N -23.276 -2.035 -28.564 -0.475 1.570 2.687 H10 YSM 46 YSM H11 H10 H 0 1 N N N -23.155 -3.450 -32.612 3.711 1.989 1.986 H11 YSM 47 YSM H13 H11 H 0 1 N N N -19.881 -6.051 -31.383 4.906 2.171 0.283 H13 YSM 48 YSM H12 H12 H 0 1 N N N -20.082 -4.638 -32.474 5.215 0.723 1.270 H12 YSM 49 YSM H14 H13 H 0 1 N N N -20.680 -8.352 -32.454 5.836 2.375 -1.950 H14 YSM 50 YSM H15 H14 H 0 1 N N N -20.257 -9.815 -34.400 7.641 1.714 -3.488 H15 YSM 51 YSM H16 H15 H 0 1 N N N -19.438 -8.825 -36.511 8.915 -0.352 -3.077 H16 YSM 52 YSM H17 H16 H 0 1 N N N -19.508 -4.927 -34.729 6.579 -1.093 0.418 H17 YSM 53 YSM H18 H17 H 0 1 N N N -21.370 -5.760 -29.460 1.341 -0.354 -0.686 H18 YSM 54 YSM H8 H18 H 0 1 N N N -27.070 -4.284 -23.993 -7.359 2.166 0.257 H8 YSM 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSM F1 C25 SING N N 1 YSM C25 C24 DOUB Y N 2 YSM C25 C26 SING Y N 3 YSM C24 C23 SING Y N 4 YSM C26 C21 DOUB Y N 5 YSM C23 C22 DOUB Y N 6 YSM C21 C22 SING Y N 7 YSM C21 C20 SING N N 8 YSM C20 O4 SING N N 9 YSM O4 C19 SING N N 10 YSM C18 C19 DOUB Y N 11 YSM C18 C17 SING Y N 12 YSM CL1 C17 SING N N 13 YSM C19 C27 SING Y N 14 YSM C17 C16 DOUB Y N 15 YSM C27 C15 DOUB Y N 16 YSM C16 C15 SING Y N 17 YSM C15 C14 SING N N 18 YSM O1 C1 DOUB N N 19 YSM C14 C1 SING N N 20 YSM C14 C13 DOUB N N 21 YSM C1 N1 SING N N 22 YSM C13 C8 SING N N 23 YSM N1 C2 SING N N 24 YSM N1 C7 SING N N 25 YSM C2 C3 DOUB Y N 26 YSM C2 C6 SING Y N 27 YSM C3 N2 SING Y N 28 YSM C8 C7 DOUB N N 29 YSM C8 C9 SING N N 30 YSM C6 C5 DOUB Y N 31 YSM N2 C4 DOUB Y N 32 YSM C11 C9 DOUB N N 33 YSM C11 N4 SING N N 34 YSM C5 C4 SING Y N 35 YSM C9 C10 SING N N 36 YSM N4 C12 SING N N 37 YSM C10 O2 DOUB N N 38 YSM C10 N3 SING N N 39 YSM C12 N3 SING N N 40 YSM C12 O3 DOUB N N 41 YSM C3 H1 SING N N 42 YSM N3 H6 SING N N 43 YSM C4 H2 SING N N 44 YSM C5 H3 SING N N 45 YSM C6 H4 SING N N 46 YSM C7 H5 SING N N 47 YSM C11 H7 SING N N 48 YSM C13 H9 SING N N 49 YSM C16 H10 SING N N 50 YSM C18 H11 SING N N 51 YSM C20 H13 SING N N 52 YSM C20 H12 SING N N 53 YSM C22 H14 SING N N 54 YSM C23 H15 SING N N 55 YSM C24 H16 SING N N 56 YSM C26 H17 SING N N 57 YSM C27 H18 SING N N 58 YSM N4 H8 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSM SMILES ACDLabs 12.01 "Fc1cccc(c1)COc1cc(cc(Cl)c1)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O" YSM InChI InChI 1.03 "InChI=1S/C27H18ClFN4O4/c28-19-8-17(9-22(11-19)37-15-16-3-1-4-20(29)7-16)23-10-18(24-13-31-27(36)32-25(24)34)14-33(26(23)35)21-5-2-6-30-12-21/h1-14H,15H2,(H2,31,32,34,36)" YSM InChIKey InChI 1.03 DGQRJEVFDWWDCX-UHFFFAOYSA-N YSM SMILES_CANONICAL CACTVS 3.385 "Fc1cccc(COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)c1" YSM SMILES CACTVS 3.385 "Fc1cccc(COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)c1" YSM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)F)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YSM SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)F)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSM "SYSTEMATIC NAME" ACDLabs 12.01 "5-(3-{3-chloro-5-[(3-fluorophenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" YSM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[(3-fluorophenyl)methoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSM "Create component" 2021-03-30 RCSB YSM "Initial release" 2021-06-30 RCSB ##