data_YSP # _chem_comp.id YSP _chem_comp.name "5-(3-{3-chloro-5-[(2-methylphenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H21 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-30 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.944 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M8N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSP C7 C1 C 0 1 N N N -21.271 -4.392 -25.884 -3.424 -1.009 0.188 C7 YSP 1 YSP C6 C2 C 0 1 Y N N -18.395 -5.854 -26.063 -2.562 -4.116 0.570 C6 YSP 2 YSP C1 C3 C 0 1 N N N -20.487 -4.159 -28.187 -1.229 -1.396 -0.573 C1 YSP 3 YSP C2 C4 C 0 1 Y N N -18.858 -4.635 -26.444 -2.761 -3.203 -0.463 C2 YSP 4 YSP C4 C5 C 0 1 Y N N -16.266 -4.840 -25.732 -3.372 -5.821 -0.892 C4 YSP 5 YSP C5 C6 C 0 1 Y N N -17.090 -5.960 -25.708 -2.872 -5.446 0.342 C5 YSP 6 YSP C10 C7 C 0 1 N N N -23.554 -3.559 -23.887 -4.672 2.384 0.117 C10 YSP 7 YSP C11 C8 C 0 1 N N N -24.881 -4.831 -25.606 -4.789 1.006 2.117 C11 YSP 8 YSP C16 C9 C 0 1 Y N N -21.686 -4.476 -31.195 1.547 0.030 0.017 C16 YSP 9 YSP C17 C10 C 0 1 Y N N -21.970 -4.170 -32.445 2.814 0.497 -0.291 C17 YSP 10 YSP C21 C11 C 0 1 N N N -19.114 -3.923 -35.341 7.931 1.346 -0.308 C21 YSP 11 YSP C22 C12 C 0 1 Y N N -19.121 -6.008 -36.959 8.525 -0.166 1.597 C22 YSP 12 YSP C23 C13 C 0 1 Y N N -19.377 -7.282 -37.184 8.176 -1.057 2.593 C23 YSP 13 YSP C20 C14 C 0 1 Y N N -19.407 -5.402 -35.594 7.551 0.369 0.775 C20 YSP 14 YSP C24 C15 C 0 1 Y N N -19.959 -8.149 -36.083 6.852 -1.414 2.768 C24 YSP 15 YSP C25 C16 C 0 1 Y N N -20.209 -7.623 -34.887 5.877 -0.879 1.947 C25 YSP 16 YSP C26 C17 C 0 1 Y N N -22.804 -2.951 -32.779 2.987 1.403 -1.329 C26 YSP 17 YSP C27 C18 C 0 1 Y N N -23.236 -2.194 -31.793 1.897 1.842 -2.059 C27 YSP 18 YSP C28 C19 C 0 1 Y N N -22.911 -2.535 -30.354 0.630 1.381 -1.758 C28 YSP 19 YSP C12 C20 C 0 1 N N N -25.834 -4.334 -23.322 -6.162 2.909 1.839 C12 YSP 20 YSP C13 C21 C 0 1 N N N -22.907 -3.876 -27.680 -1.878 0.834 0.087 C13 YSP 21 YSP C14 C22 C 0 1 N N N -21.875 -3.890 -28.619 -0.909 -0.029 -0.396 C14 YSP 22 YSP C15 C23 C 0 1 Y N N -22.192 -3.597 -30.074 0.448 0.471 -0.717 C15 YSP 23 YSP C18 C24 C 0 1 N N N -20.220 -5.542 -33.275 5.165 0.592 0.050 C18 YSP 24 YSP C19 C25 C 0 1 Y N N -19.905 -6.159 -34.630 6.228 0.009 0.946 C19 YSP 25 YSP C3 C26 C 0 1 Y N N -18.034 -3.523 -26.466 -3.261 -3.658 -1.676 C3 YSP 26 YSP C8 C27 C 0 1 N N N -22.605 -4.126 -26.301 -3.158 0.326 0.383 C8 YSP 27 YSP C9 C28 C 0 1 N N N -23.711 -4.157 -25.268 -4.216 1.229 0.902 C9 YSP 28 YSP N1 N1 N 0 1 N N N -20.220 -4.409 -26.842 -2.463 -1.847 -0.281 N1 YSP 29 YSP N2 N2 N 0 1 Y N N -16.748 -3.635 -26.099 -3.544 -4.933 -1.851 N2 YSP 30 YSP N3 N3 N 0 1 N N N -24.628 -3.653 -22.951 -5.633 3.178 0.632 N3 YSP 31 YSP N4 N4 N 0 1 N N N -25.971 -4.928 -24.645 -5.762 1.855 2.568 N4 YSP 32 YSP O1 O1 O 0 1 N N N -19.431 -4.186 -29.100 -0.383 -2.169 -0.993 O1 YSP 33 YSP O2 O2 O 0 1 N N N -22.382 -2.910 -23.534 -4.188 2.622 -0.974 O2 YSP 34 YSP O3 O3 O 0 1 N N N -26.888 -4.444 -22.427 -7.027 3.640 2.282 O3 YSP 35 YSP O4 O4 O 0 1 N N N -21.494 -4.970 -33.477 3.888 0.069 0.423 O4 YSP 36 YSP CL1 CL1 CL 0 0 N N N -24.230 -0.771 -32.134 2.122 2.974 -3.355 CL1 YSP 37 YSP H5 H1 H 0 1 N N N -21.057 -4.581 -24.842 -4.406 -1.397 0.416 H5 YSP 38 YSP H4 H2 H 0 1 N N N -19.047 -6.714 -26.043 -2.170 -3.795 1.524 H4 YSP 39 YSP H2 H3 H 0 1 N N N -15.227 -4.936 -25.453 -3.615 -6.857 -1.075 H2 YSP 40 YSP H3 H4 H 0 1 N N N -16.690 -6.917 -25.406 -2.725 -6.183 1.118 H3 YSP 41 YSP H7 H5 H 0 1 N N N -24.981 -5.283 -26.582 -4.478 0.166 2.720 H7 YSP 42 YSP H10 H6 H 0 1 N N N -21.094 -5.351 -30.972 1.412 -0.678 0.821 H10 YSP 43 YSP H13 H7 H 0 1 N N N -20.004 -3.325 -35.588 8.150 0.803 -1.227 H13 YSP 44 YSP H14 H8 H 0 1 N N N -18.856 -3.776 -34.282 7.105 2.036 -0.482 H14 YSP 45 YSP H15 H9 H 0 1 N N N -18.271 -3.603 -35.971 8.813 1.906 0.002 H15 YSP 46 YSP H16 H10 H 0 1 N N N -18.708 -5.394 -37.746 9.559 0.116 1.463 H16 YSP 47 YSP H17 H11 H 0 1 N N N -19.172 -7.709 -38.154 8.937 -1.475 3.235 H17 YSP 48 YSP H18 H12 H 0 1 N N N -20.170 -9.192 -36.270 6.578 -2.111 3.547 H18 YSP 49 YSP H19 H13 H 0 1 N N N -20.627 -8.236 -34.102 4.843 -1.157 2.084 H19 YSP 50 YSP H20 H14 H 0 1 N N N -23.039 -2.708 -33.805 3.976 1.766 -1.567 H20 YSP 51 YSP H21 H15 H 0 1 N N N -23.272 -1.903 -29.556 -0.220 1.726 -2.329 H21 YSP 52 YSP H9 H16 H 0 1 N N N -23.923 -3.679 -27.989 -1.655 1.881 0.235 H9 YSP 53 YSP H11 H17 H 0 1 N N N -20.251 -6.310 -32.488 5.158 1.677 0.154 H11 YSP 54 YSP H12 H18 H 0 1 N N N -19.479 -4.774 -33.008 5.378 0.328 -0.985 H12 YSP 55 YSP H1 H19 H 0 1 N N N -18.426 -2.566 -26.778 -3.420 -2.959 -2.484 H1 YSP 56 YSP H6 H20 H 0 1 N N N -24.540 -3.246 -22.042 -5.944 3.948 0.130 H6 YSP 57 YSP H8 H21 H 0 1 N N N -26.815 -5.403 -24.894 -6.169 1.694 3.434 H8 YSP 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSP C23 C22 DOUB Y N 1 YSP C23 C24 SING Y N 2 YSP C22 C20 SING Y N 3 YSP C24 C25 DOUB Y N 4 YSP C20 C21 SING N N 5 YSP C20 C19 DOUB Y N 6 YSP C25 C19 SING Y N 7 YSP C19 C18 SING N N 8 YSP O4 C18 SING N N 9 YSP O4 C17 SING N N 10 YSP C26 C17 DOUB Y N 11 YSP C26 C27 SING Y N 12 YSP C17 C16 SING Y N 13 YSP CL1 C27 SING N N 14 YSP C27 C28 DOUB Y N 15 YSP C16 C15 DOUB Y N 16 YSP C28 C15 SING Y N 17 YSP C15 C14 SING N N 18 YSP O1 C1 DOUB N N 19 YSP C14 C1 SING N N 20 YSP C14 C13 DOUB N N 21 YSP C1 N1 SING N N 22 YSP C13 C8 SING N N 23 YSP N1 C2 SING N N 24 YSP N1 C7 SING N N 25 YSP C3 C2 DOUB Y N 26 YSP C3 N2 SING Y N 27 YSP C2 C6 SING Y N 28 YSP C8 C7 DOUB N N 29 YSP C8 C9 SING N N 30 YSP N2 C4 DOUB Y N 31 YSP C6 C5 DOUB Y N 32 YSP C4 C5 SING Y N 33 YSP C11 C9 DOUB N N 34 YSP C11 N4 SING N N 35 YSP C9 C10 SING N N 36 YSP N4 C12 SING N N 37 YSP C10 O2 DOUB N N 38 YSP C10 N3 SING N N 39 YSP C12 N3 SING N N 40 YSP C12 O3 DOUB N N 41 YSP C7 H5 SING N N 42 YSP C6 H4 SING N N 43 YSP C4 H2 SING N N 44 YSP C5 H3 SING N N 45 YSP C11 H7 SING N N 46 YSP C16 H10 SING N N 47 YSP C21 H13 SING N N 48 YSP C21 H14 SING N N 49 YSP C21 H15 SING N N 50 YSP C22 H16 SING N N 51 YSP C23 H17 SING N N 52 YSP C24 H18 SING N N 53 YSP C25 H19 SING N N 54 YSP C26 H20 SING N N 55 YSP C28 H21 SING N N 56 YSP C13 H9 SING N N 57 YSP C18 H11 SING N N 58 YSP C18 H12 SING N N 59 YSP C3 H1 SING N N 60 YSP N3 H6 SING N N 61 YSP N4 H8 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSP SMILES ACDLabs 12.01 "Cc1ccccc1COc1cc(cc(Cl)c1)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O" YSP InChI InChI 1.03 "InChI=1S/C28H21ClN4O4/c1-17-5-2-3-6-18(17)16-37-23-10-19(9-21(29)12-23)24-11-20(25-14-31-28(36)32-26(25)34)15-33(27(24)35)22-7-4-8-30-13-22/h2-15H,16H2,1H3,(H2,31,32,34,36)" YSP InChIKey InChI 1.03 CXKRCAINPQDWER-UHFFFAOYSA-N YSP SMILES_CANONICAL CACTVS 3.385 "Cc1ccccc1COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YSP SMILES CACTVS 3.385 "Cc1ccccc1COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YSP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YSP SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSP "SYSTEMATIC NAME" ACDLabs 12.01 "5-(3-{3-chloro-5-[(2-methylphenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" YSP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[(2-methylphenyl)methoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSP "Create component" 2021-03-30 RCSB YSP "Initial release" 2021-06-30 RCSB ##