data_YSQ # _chem_comp.id YSQ _chem_comp.name "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H25 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2023-02-17 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.555 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G2N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSQ C13 C1 C 0 1 Y N N N N N -11.102 -14.589 10.302 4.840 -3.062 -0.152 C13 YSQ 1 YSQ C17 C2 C 0 1 Y N N N N N -9.391 -13.640 8.849 6.127 -1.000 0.062 C17 YSQ 2 YSQ C20 C3 C 0 1 Y N N N N N -8.437 -13.109 6.241 8.613 0.197 0.270 C20 YSQ 3 YSQ C21 C4 C 0 1 Y N N N N N -9.653 -13.782 6.385 8.550 -1.160 0.168 C21 YSQ 4 YSQ C22 C5 C 0 1 N N N N N N -12.014 -15.139 6.753 8.432 -3.921 -0.033 C22 YSQ 5 YSQ C28 C6 C 0 1 Y N N N N N -2.483 -9.496 12.097 -4.830 -1.672 -0.043 C28 YSQ 6 YSQ C02 C7 C 0 1 N N N N N N -5.362 -10.211 15.792 -2.424 2.460 -0.070 C02 YSQ 7 YSQ C03 C8 C 0 1 Y N N N N N -6.574 -10.962 16.321 -1.156 3.225 -0.075 C03 YSQ 8 YSQ C04 C9 C 0 1 Y N N N N N -6.814 -10.965 17.704 -1.191 4.621 -0.083 C04 YSQ 9 YSQ C05 C10 C 0 1 Y N N N N N -7.911 -11.703 18.166 -0.000 5.329 -0.089 C05 YSQ 10 YSQ C06 C11 C 0 1 Y N N N N N -8.706 -12.394 17.238 1.191 4.622 -0.085 C06 YSQ 11 YSQ C07 C12 C 0 1 Y N N N N N -8.376 -12.366 15.885 1.155 3.226 -0.077 C07 YSQ 12 YSQ C08 C13 C 0 1 N N N N N N -9.260 -13.091 14.888 2.424 2.460 -0.073 C08 YSQ 13 YSQ C11 C14 C 0 1 N N N N N N -9.157 -13.449 11.410 3.571 -0.911 -0.053 C11 YSQ 14 YSQ C12 C15 C 0 1 Y N N N N N -9.890 -13.908 10.170 4.830 -1.671 -0.049 C12 YSQ 15 YSQ C14 C16 C 0 1 Y N N N N N -11.772 -14.960 9.142 6.052 -3.739 -0.139 C14 YSQ 16 YSQ C16 C17 C 0 1 Y N N N N N -10.121 -14.040 7.725 7.300 -1.793 0.060 C16 YSQ 17 YSQ C18 C18 C 0 1 Y N N N N N -8.163 -12.953 8.644 6.226 0.391 0.170 C18 YSQ 18 YSQ C19 C19 C 0 1 Y N N N N N -7.696 -12.692 7.351 7.456 0.972 0.272 C19 YSQ 19 YSQ C27 C20 C 0 1 N N N N N N -3.741 -10.010 12.720 -3.571 -0.911 -0.049 C27 YSQ 20 YSQ C29 C21 C 0 1 Y N N N N N -2.180 -9.733 10.715 -6.127 -1.000 0.064 C29 YSQ 21 YSQ C30 C22 C 0 1 Y N N N N N -0.985 -9.272 10.246 -7.299 -1.794 0.063 C30 YSQ 22 YSQ C31 C23 C 0 1 Y N N N N N -0.593 -9.470 8.905 -8.550 -1.160 0.165 C31 YSQ 23 YSQ C32 C24 C 0 1 Y N N N N N -1.475 -10.107 8.053 -8.613 0.197 0.262 C32 YSQ 24 YSQ C33 C25 C 0 1 Y N N N N N -2.676 -10.581 8.509 -7.456 0.972 0.263 C33 YSQ 25 YSQ C34 C26 C 0 1 Y N N N N N -3.054 -10.392 9.830 -6.226 0.391 0.165 C34 YSQ 26 YSQ C36 C27 C 0 1 Y N N N N N -0.392 -8.396 12.354 -6.051 -3.739 -0.136 C36 YSQ 27 YSQ C37 C28 C 0 1 Y N N N N N -1.584 -8.829 12.929 -4.840 -3.063 -0.145 C37 YSQ 28 YSQ C38 C29 C 0 1 N N N N N N 1.148 -8.143 10.563 -8.432 -3.921 -0.032 C38 YSQ 29 YSQ N09 N1 N 0 1 N N N N N N -8.811 -13.063 13.545 2.397 1.112 -0.065 N09 YSQ 30 YSQ N10 N2 N 0 1 N N N N N N -9.654 -13.639 12.567 3.597 0.388 -0.061 N10 YSQ 31 YSQ N15 N3 N 1 1 Y N N N N N -11.288 -14.708 7.924 7.204 -3.123 -0.038 N15 YSQ 32 YSQ N24 N4 N 0 1 Y N N N N N -7.346 -11.649 15.469 -0.000 2.579 -0.067 N24 YSQ 33 YSQ N25 N5 N 0 1 N N N N N N -5.115 -10.355 14.405 -2.397 1.112 -0.062 N25 YSQ 34 YSQ N26 N6 N 0 1 N N N N N N -3.946 -9.790 13.928 -3.596 0.388 -0.056 N26 YSQ 35 YSQ N35 N7 N 1 1 Y N N N N N -0.130 -8.622 11.076 -7.204 -3.123 -0.034 N35 YSQ 36 YSQ O01 O1 O 0 1 N N N N N N -4.615 -9.588 16.518 -3.488 3.047 -0.072 O01 YSQ 37 YSQ O23 O2 O 0 1 N N N N N N -10.279 -13.660 15.114 3.488 3.047 -0.077 O23 YSQ 38 YSQ H131 H1 H 0 0 N N N N N N -11.507 -14.820 11.276 3.912 -3.608 -0.236 H131 YSQ 39 YSQ H201 H2 H 0 0 N N N N N N -8.061 -12.906 5.249 9.575 0.679 0.352 H201 YSQ 40 YSQ H211 H3 H 0 0 N N N N N N -10.222 -14.098 5.523 9.457 -1.746 0.168 H211 YSQ 41 YSQ H222 H4 H 0 0 N N N N N N -12.931 -15.662 7.061 8.686 -4.191 0.992 H222 YSQ 42 YSQ H223 H5 H 0 0 N N N N N N -12.279 -14.263 6.143 8.280 -4.826 -0.620 H223 YSQ 43 YSQ H221 H6 H 0 0 N N N N N N -11.385 -15.820 6.162 9.245 -3.339 -0.467 H221 YSQ 44 YSQ H041 H7 H 0 0 N N N N N N -6.178 -10.420 18.385 -2.137 5.143 -0.086 H041 YSQ 45 YSQ H051 H8 H 0 0 N N N N N N -8.142 -11.740 19.220 -0.000 6.409 -0.095 H051 YSQ 46 YSQ H061 H9 H 0 0 N N N N N N -9.572 -12.946 17.572 2.136 5.144 -0.090 H061 YSQ 47 YSQ H111 H10 H 0 0 N N N N N N -8.202 -12.955 11.314 2.626 -1.433 -0.049 H111 YSQ 48 YSQ H141 H12 H 0 0 N N N N N N -12.719 -15.471 9.230 6.045 -4.816 -0.214 H141 YSQ 49 YSQ H181 H13 H 0 0 N N N N N N -7.584 -12.629 9.496 5.335 1.001 0.173 H181 YSQ 50 YSQ H191 H14 H 0 0 N N N N N N -6.762 -12.168 7.210 7.534 2.046 0.354 H191 YSQ 51 YSQ H271 H15 H 0 0 N N N N N N -4.459 -10.562 12.132 -2.625 -1.433 -0.046 H271 YSQ 52 YSQ H311 H17 H 0 0 N N N N N N 0.371 -9.133 8.554 -9.457 -1.746 0.166 H311 YSQ 53 YSQ H321 H18 H 0 0 N N N N N N -1.213 -10.233 7.013 -9.576 0.680 0.341 H321 YSQ 54 YSQ H331 H19 H 0 0 N N N N N N -3.335 -11.107 7.834 -7.534 2.047 0.341 H331 YSQ 55 YSQ H341 H20 H 0 0 N N N N N N -4.013 -10.748 10.177 -5.335 1.001 0.166 H341 YSQ 56 YSQ H361 H21 H 0 0 N N N N N N 0.330 -7.868 12.960 -6.045 -4.816 -0.215 H361 YSQ 57 YSQ H371 H22 H 0 0 N N N N N N -1.803 -8.656 13.972 -3.912 -3.609 -0.231 H371 YSQ 58 YSQ H382 H23 H 0 0 N N N N N N 1.704 -7.645 11.371 -8.785 -4.047 -1.056 H382 YSQ 59 YSQ H381 H24 H 0 0 N N N N N N 1.734 -8.994 10.185 -8.230 -4.898 0.405 H381 YSQ 60 YSQ H383 H25 H 0 0 N N N N N N 0.970 -7.429 9.746 -9.196 -3.411 0.554 H383 YSQ 61 YSQ H091 H26 H 0 0 N N N N N N -7.933 -12.652 13.298 1.548 0.644 -0.062 H091 YSQ 62 YSQ H251 H28 H 0 0 N N N N N N -5.751 -10.839 13.803 -1.548 0.644 -0.059 H251 YSQ 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSQ C20 C21 DOUB Y N 1 YSQ C20 C19 SING Y N 2 YSQ C21 C16 SING Y N 3 YSQ C22 N15 SING N N 4 YSQ C19 C18 DOUB Y N 5 YSQ C16 N15 DOUB Y N 6 YSQ C16 C17 SING Y N 7 YSQ N15 C14 SING Y N 8 YSQ C32 C33 DOUB Y N 9 YSQ C32 C31 SING Y N 10 YSQ C33 C34 SING Y N 11 YSQ C18 C17 SING Y N 12 YSQ C17 C12 DOUB Y N 13 YSQ C31 C30 DOUB Y N 14 YSQ C14 C13 DOUB Y N 15 YSQ C34 C29 DOUB Y N 16 YSQ C12 C13 SING Y N 17 YSQ C12 C11 SING N N 18 YSQ C30 C29 SING Y N 19 YSQ C30 N35 SING Y N 20 YSQ C38 N35 SING N N 21 YSQ C29 C28 SING Y N 22 YSQ N35 C36 DOUB Y N 23 YSQ C11 N10 DOUB N E 24 YSQ C28 C27 SING N N 25 YSQ C28 C37 DOUB Y N 26 YSQ C36 C37 SING Y N 27 YSQ N10 N09 SING N N 28 YSQ C27 N26 DOUB N E 29 YSQ N09 C08 SING N N 30 YSQ N26 N25 SING N N 31 YSQ N25 C02 SING N N 32 YSQ C08 O23 DOUB N N 33 YSQ C08 C07 SING N N 34 YSQ N24 C07 DOUB Y N 35 YSQ N24 C03 SING Y N 36 YSQ C02 C03 SING N N 37 YSQ C02 O01 DOUB N N 38 YSQ C07 C06 SING Y N 39 YSQ C03 C04 DOUB Y N 40 YSQ C06 C05 DOUB Y N 41 YSQ C04 C05 SING Y N 42 YSQ C13 H131 SING N N 43 YSQ C20 H201 SING N N 44 YSQ C21 H211 SING N N 45 YSQ C22 H222 SING N N 46 YSQ C22 H223 SING N N 47 YSQ C22 H221 SING N N 48 YSQ C04 H041 SING N N 49 YSQ C05 H051 SING N N 50 YSQ C06 H061 SING N N 51 YSQ C11 H111 SING N N 52 YSQ C14 H141 SING N N 53 YSQ C18 H181 SING N N 54 YSQ C19 H191 SING N N 55 YSQ C27 H271 SING N N 56 YSQ C31 H311 SING N N 57 YSQ C32 H321 SING N N 58 YSQ C33 H331 SING N N 59 YSQ C34 H341 SING N N 60 YSQ C36 H361 SING N N 61 YSQ C37 H371 SING N N 62 YSQ C38 H382 SING N N 63 YSQ C38 H381 SING N N 64 YSQ C38 H383 SING N N 65 YSQ N09 H091 SING N N 66 YSQ N25 H251 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSQ SMILES ACDLabs 12.01 "O=C(N/N=C/c1cc[n+](C)c2ccccc21)c1cccc(n1)C(=O)N/N=C/c1cc[n+](C)c2ccccc21" YSQ InChI InChI 1.06 "InChI=1S/C29H23N7O2/c1-35-16-14-20(22-8-3-5-12-26(22)35)18-30-33-28(37)24-10-7-11-25(32-24)29(38)34-31-19-21-15-17-36(2)27-13-6-4-9-23(21)27/h3-19H,1-2H3/p+2" YSQ InChIKey InChI 1.06 CVURQMOLKNHXLB-UHFFFAOYSA-P YSQ SMILES_CANONICAL CACTVS 3.385 "C[n+]1ccc(\C=N\NC(=O)c2cccc(n2)C(=O)N/N=C/c3cc[n+](C)c4ccccc34)c5ccccc15" YSQ SMILES CACTVS 3.385 "C[n+]1ccc(C=NNC(=O)c2cccc(n2)C(=O)NN=Cc3cc[n+](C)c4ccccc34)c5ccccc15" YSQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1c2c(c(cc1)/C=N/NC(=O)c3nc(ccc3)C(=O)N/N=C/c4c5c([n+](cc4)C)cccc5)cccc2" YSQ SMILES "OpenEye OEToolkits" 2.0.7 "C[n+]1ccc(c2c1cccc2)C=NNC(=O)c3cccc(n3)C(=O)NN=Cc4cc[n+](c5c4cccc5)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSQ "SYSTEMATIC NAME" ACDLabs 12.01 "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" YSQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}2,~{N}6-bis[(~{E})-(1-methylquinolin-1-ium-4-yl)methylideneamino]pyridine-2,6-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSQ "Create component" 2023-02-17 RCSB YSQ "Initial release" 2024-02-14 RCSB #