data_YSR # _chem_comp.id YSR _chem_comp.name "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H28 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 552.602 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSR C10 C1 C 0 1 Y N N N N N -21.657 -11.874 9.814 -0.889 1.111 0.510 C10 YSR 1 YSR C11 C2 C 0 1 Y N N N N N -21.038 -12.190 8.495 -2.300 0.744 0.261 C11 YSR 2 YSR C12 C3 C 0 1 Y N N N N N -19.848 -11.609 8.133 -3.270 1.019 1.221 C12 YSR 3 YSR C13 C4 C 0 1 Y N N N N N -19.254 -12.002 6.960 -4.598 0.672 0.982 C13 YSR 4 YSR C14 C5 C 0 1 N N N N N N -17.953 -11.363 6.551 -5.602 0.952 1.964 C14 YSR 5 YSR C16 C6 C 0 1 Y N N N N N -19.817 -12.954 6.152 -4.949 0.046 -0.227 C16 YSR 6 YSR C19 C7 C 0 1 N N N N N N -18.200 -14.609 2.818 -5.870 -3.020 -0.315 C19 YSR 7 YSR C01 C8 C 0 1 N N N N N N -22.804 -12.398 15.649 4.298 4.207 -0.030 C01 YSR 8 YSR C02 C9 C 0 1 N N S N N N -23.321 -12.015 14.290 3.541 2.971 0.459 C02 YSR 9 YSR C03 C10 C 0 1 Y N N N N N -22.689 -12.776 13.135 2.165 2.949 -0.156 C03 YSR 10 YSR C04 C11 C 0 1 Y N N N N N -22.350 -12.126 11.936 1.186 2.099 0.354 C04 YSR 11 YSR C06 C12 C 0 1 Y N N N N N -22.073 -10.672 10.343 -0.058 0.591 1.487 C06 YSR 12 YSR C07 C13 C 0 1 N N N N N N -22.260 -9.373 9.675 -0.432 -0.428 2.468 C07 YSR 13 YSR C22 C14 C 0 1 Y N N N N N -21.008 -13.536 6.512 -3.970 -0.224 -1.177 C22 YSR 14 YSR C23 C15 C 0 1 Y N N N N N -21.584 -13.175 7.707 -2.660 0.126 -0.941 C23 YSR 15 YSR C24 C16 C 0 1 Y N N N N N -21.809 -12.818 10.849 -0.092 2.093 -0.235 C24 YSR 16 YSR C25 C17 C 0 1 Y N N N N N -21.562 -14.197 10.957 -0.366 2.934 -1.317 C25 YSR 17 YSR C26 C18 C 0 1 Y N N N N N -21.894 -14.831 12.128 0.610 3.759 -1.799 C26 YSR 18 YSR C27 C19 C 0 1 Y N N N N N -22.459 -14.145 13.208 1.873 3.769 -1.223 C27 YSR 19 YSR C29 C20 C 0 1 N N N N N N -25.625 -13.065 14.754 4.752 0.719 0.982 C29 YSR 20 YSR C30 C21 C 0 1 N N N N N N -26.914 -12.754 14.210 5.441 -0.300 0.053 C30 YSR 21 YSR C31 C22 C 0 1 N N N N N N -28.277 -13.350 14.444 4.748 -1.661 0.143 C31 YSR 22 YSR C33 C23 C 0 1 N N N N N N -29.528 -15.165 15.318 4.732 -3.905 -0.791 C33 YSR 23 YSR C34 C24 C 0 1 N N N N N N -29.662 -14.617 16.688 6.072 -4.620 -0.542 C34 YSR 24 YSR C36 C25 C 0 1 N N N N N N -28.246 -14.165 16.661 6.519 -3.326 0.162 C36 YSR 25 YSR C38 C26 C 0 1 N N N N N N -25.521 -11.296 13.284 4.608 1.431 -1.188 C38 YSR 26 YSR N05 N1 N 0 1 Y N N N N N -22.464 -10.824 11.596 1.183 1.189 1.385 N05 YSR 27 YSR N15 N2 N 0 1 N N N N N N -16.984 -10.872 6.237 -6.399 1.174 2.743 N15 YSR 28 YSR N17 N3 N 0 1 N N N N N N -19.098 -13.237 4.962 -6.269 -0.308 -0.468 N17 YSR 29 YSR N28 N4 N 0 1 N N N N N N -24.759 -12.130 14.198 4.271 1.764 0.066 N28 YSR 30 YSR N32 N5 N 0 1 N N N N N N -28.179 -14.537 15.226 5.493 -2.643 -0.657 N32 YSR 31 YSR N35 N6 N 0 1 N N N N N N -30.587 -13.499 16.701 5.968 -5.777 0.357 N35 YSR 32 YSR O08 O1 O 0 1 N N N N N N -22.243 -8.340 10.343 0.471 -0.857 3.375 O08 YSR 33 YSR O09 O2 O 0 1 N N N N N N -22.585 -9.380 8.462 -1.558 -0.889 2.467 O09 YSR 34 YSR O20 O3 O 0 1 N N N N N N -20.843 -14.411 3.506 -5.919 -1.543 -2.536 O20 YSR 35 YSR O21 O4 O 0 1 N N N N N N -19.588 -15.867 4.759 -8.032 -1.781 -1.271 O21 YSR 36 YSR O37 O5 O 0 1 N N N N N N -26.869 -11.693 13.371 5.277 0.269 -1.278 O37 YSR 37 YSR O39 O6 O 0 1 N N N N N N -25.162 -10.406 12.642 4.335 2.116 -2.154 O39 YSR 38 YSR S18 S1 S 0 1 N N N N N N -19.495 -14.564 4.074 -6.614 -1.695 -1.306 S18 YSR 39 YSR H121 H1 H 0 0 N N N N N N -19.389 -10.858 8.759 -2.994 1.500 2.148 H121 YSR 40 YSR H193 H2 H 0 0 N N N N N N -17.220 -14.724 3.305 -4.797 -2.852 -0.231 H193 YSR 41 YSR H191 H3 H 0 0 N N N N N N -18.375 -15.458 2.141 -6.317 -3.023 0.680 H191 YSR 42 YSR H192 H4 H 0 0 N N N N N N -18.215 -13.672 2.242 -6.051 -3.980 -0.798 H192 YSR 43 YSR H011 H5 H 0 0 N N N N N N -23.315 -11.800 16.418 3.755 5.106 0.263 H011 YSR 44 YSR H012 H6 H 0 0 N N N N N N -22.997 -13.466 15.827 5.293 4.223 0.415 H012 YSR 45 YSR H013 H7 H 0 0 N N N N N N -21.722 -12.208 15.696 4.386 4.174 -1.116 H013 YSR 46 YSR H021 H8 H 0 0 N N N N N N -23.066 -10.955 14.142 3.453 3.005 1.545 H021 YSR 47 YSR H221 H9 H 0 0 N N N N N N -21.482 -14.263 5.869 -4.240 -0.705 -2.106 H221 YSR 48 YSR H231 H10 H 0 0 N N N N N N -22.484 -13.676 8.033 -1.905 -0.086 -1.684 H231 YSR 49 YSR H251 H11 H 0 0 N N N N N N -21.121 -14.745 10.138 -1.346 2.931 -1.770 H251 YSR 50 YSR H261 H12 H 0 0 N N N N N N -21.713 -15.892 12.218 0.397 4.408 -2.636 H261 YSR 51 YSR H271 H13 H 0 0 N N N N N N -22.719 -14.684 14.107 2.634 4.427 -1.616 H271 YSR 52 YSR H1 H14 H 0 1 N N N N N N -25.324 -14.085 14.473 3.917 0.255 1.506 H1 YSR 53 YSR H291 H15 H 0 0 N N N N N N -25.637 -12.975 15.850 5.467 1.132 1.693 H291 YSR 54 YSR H2 H16 H 0 1 N N N N N N -26.742 -13.444 13.371 6.497 -0.392 0.304 H2 YSR 55 YSR H311 H17 H 0 0 N N N N N N -28.905 -12.619 14.974 4.720 -1.987 1.183 H311 YSR 56 YSR H312 H18 H 0 0 N N N N N N -28.736 -13.593 13.474 3.731 -1.578 -0.239 H312 YSR 57 YSR H332 H19 H 0 0 N N N N N N -30.261 -14.771 14.599 4.325 -4.069 -1.788 H332 YSR 58 YSR H331 H20 H 0 0 N N N N N N -29.520 -16.264 15.269 3.997 -4.062 -0.001 H331 YSR 59 YSR H341 H21 H 0 0 N N N N N N -29.866 -15.381 17.452 6.628 -4.839 -1.454 H341 YSR 60 YSR H361 H22 H 0 0 N N N N N N -27.574 -14.744 17.311 6.308 -3.312 1.231 H361 YSR 61 YSR H362 H23 H 0 0 N N N N N N -28.110 -13.091 16.857 7.541 -3.028 -0.073 H362 YSR 62 YSR H051 H24 H 0 0 N N N N N N -22.791 -10.093 12.195 1.942 0.996 1.957 H051 YSR 63 YSR H171 H25 H 0 0 N N N N N N -18.137 -13.336 5.219 -6.989 0.256 -0.147 H171 YSR 64 YSR H352 H27 H 0 0 N N N N N N -30.666 -13.142 17.632 6.868 -6.213 0.491 H352 YSR 65 YSR H351 H28 H 0 0 N N N N N N -30.248 -12.779 16.095 5.560 -5.512 1.241 H351 YSR 66 YSR H5 H30 H 0 1 N N N N N N -22.505 -7.606 9.799 0.132 -1.530 3.980 H5 YSR 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSR C19 S18 SING N N 1 YSR O20 S18 DOUB N N 2 YSR S18 O21 DOUB N N 3 YSR S18 N17 SING N N 4 YSR N17 C16 SING N N 5 YSR C16 C22 DOUB Y N 6 YSR C16 C13 SING Y N 7 YSR N15 C14 TRIP N N 8 YSR C22 C23 SING Y N 9 YSR C14 C13 SING N N 10 YSR C13 C12 DOUB Y N 11 YSR C23 C11 DOUB Y N 12 YSR C12 C11 SING Y N 13 YSR O09 C07 DOUB N N 14 YSR C11 C10 SING N N 15 YSR C07 O08 SING N N 16 YSR C07 C06 SING N N 17 YSR C10 C06 DOUB Y N 18 YSR C10 C24 SING Y N 19 YSR C06 N05 SING Y N 20 YSR C24 C25 DOUB Y N 21 YSR C24 C04 SING Y N 22 YSR C25 C26 SING Y N 23 YSR N05 C04 SING Y N 24 YSR C04 C03 DOUB Y N 25 YSR C26 C27 DOUB Y N 26 YSR O39 C38 DOUB N N 27 YSR C03 C27 SING Y N 28 YSR C03 C02 SING N N 29 YSR C38 O37 SING N N 30 YSR C38 N28 SING N N 31 YSR O37 C30 SING N N 32 YSR N28 C02 SING N N 33 YSR N28 C29 SING N N 34 YSR C30 C31 SING N N 35 YSR C30 C29 SING N N 36 YSR C02 C01 SING N N 37 YSR C31 N32 SING N N 38 YSR N32 C33 SING N N 39 YSR N32 C36 SING N N 40 YSR C33 C34 SING N N 41 YSR C36 C34 SING N N 42 YSR C34 N35 SING N N 43 YSR C12 H121 SING N N 44 YSR C19 H193 SING N N 45 YSR C19 H191 SING N N 46 YSR C19 H192 SING N N 47 YSR C01 H011 SING N N 48 YSR C01 H012 SING N N 49 YSR C01 H013 SING N N 50 YSR C02 H021 SING N N 51 YSR C22 H221 SING N N 52 YSR C23 H231 SING N N 53 YSR C25 H251 SING N N 54 YSR C26 H261 SING N N 55 YSR C27 H271 SING N N 56 YSR C29 H1 SING N N 57 YSR C29 H291 SING N N 58 YSR C30 H2 SING N N 59 YSR C31 H311 SING N N 60 YSR C31 H312 SING N N 61 YSR C33 H332 SING N N 62 YSR C33 H331 SING N N 63 YSR C34 H341 SING N N 64 YSR C36 H361 SING N N 65 YSR C36 H362 SING N N 66 YSR N05 H051 SING N N 67 YSR N17 H171 SING N N 68 YSR N35 H352 SING N N 69 YSR N35 H351 SING N N 70 YSR O08 H5 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSR InChI InChI 1.06 "InChI=1S/C26H28N6O6S/c1-14(32-13-18(38-26(32)35)12-31-10-17(28)11-31)19-4-3-5-20-22(24(25(33)34)29-23(19)20)15-6-7-21(16(8-15)9-27)30-39(2,36)37/h3-8,14,17-18,29-30H,10-13,28H2,1-2H3,(H,33,34)/t14-,18?/m0/s1" YSR InChIKey InChI 1.06 BOVDUXOTLWXHQC-PIVQAISJSA-N YSR SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@@H](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N" YSR SMILES CACTVS 3.385 "C[CH](N1C[CH](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N" YSR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N" YSR SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N" # _pdbx_chem_comp_identifier.comp_id YSR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSR "Create component" 2023-06-21 PDBE YSR "Initial release" 2024-07-10 RCSB #