data_YSW # _chem_comp.id YSW _chem_comp.name "(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl dodecanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H58 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-17 _chem_comp.pdbx_modified_date 2023-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 579.746 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FD7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSW C01 C1 C 0 1 N N N 158.204 195.041 189.344 14.623 -4.510 -1.362 C01 YSW 1 YSW C02 C2 C 0 1 N N N 159.269 195.430 188.440 13.660 -4.048 -0.266 C02 YSW 2 YSW C03 C3 C 0 1 N N N 158.588 196.301 187.445 12.356 -3.564 -0.904 C03 YSW 3 YSW C04 C4 C 0 1 N N N 158.698 195.864 186.052 11.394 -3.102 0.192 C04 YSW 4 YSW C05 C5 C 0 1 N N N 159.321 196.844 185.195 10.090 -2.617 -0.446 C05 YSW 5 YSW C06 C6 C 0 1 N N N 158.675 197.048 183.900 9.127 -2.155 0.650 C06 YSW 6 YSW C07 C7 C 0 1 N N N 158.750 198.466 183.493 7.823 -1.671 0.012 C07 YSW 7 YSW C08 C8 C 0 1 N N N 159.117 198.631 182.108 6.860 -1.209 1.107 C08 YSW 8 YSW C09 C9 C 0 1 N N N 160.422 198.066 181.869 5.557 -0.725 0.470 C09 YSW 9 YSW C10 C10 C 0 1 N N N 160.707 197.907 180.418 4.594 -0.263 1.565 C10 YSW 10 YSW C11 C11 C 0 1 N N N 160.579 199.166 179.737 3.290 0.221 0.927 C11 YSW 11 YSW C12 C12 C 0 1 N N N 160.399 198.990 178.311 2.342 0.676 2.007 C12 YSW 12 YSW C15 C13 C 0 1 N N N 162.289 198.852 176.974 0.267 1.566 2.770 C15 YSW 13 YSW C16 C14 C 0 1 N N S 163.486 197.948 176.795 -1.065 2.066 2.206 C16 YSW 14 YSW C17 C15 C 0 1 N N N 163.671 197.582 175.336 -0.801 3.168 1.177 C17 YSW 15 YSW C23 C16 C 0 1 N N N 167.699 196.232 172.894 2.398 3.318 -3.019 C23 YSW 16 YSW C24 C17 C 0 1 N N N 168.693 196.945 172.035 3.357 2.273 -3.595 C24 YSW 17 YSW C27 C18 C 0 1 N N N 164.956 199.782 177.538 -3.105 1.010 1.573 C27 YSW 18 YSW C29 C19 C 0 1 N N N 165.180 200.272 178.945 -3.899 -0.098 0.930 C29 YSW 19 YSW C30 C20 C 0 1 N N N 164.403 199.544 180.017 -5.394 0.195 1.075 C30 YSW 20 YSW C31 C21 C 0 1 N N N 164.458 200.249 181.372 -6.200 -0.930 0.422 C31 YSW 21 YSW C32 C22 C 0 1 N N N 163.625 199.695 182.489 -7.694 -0.637 0.567 C32 YSW 22 YSW C33 C23 C 0 1 N N N 164.200 198.473 183.126 -8.500 -1.761 -0.086 C33 YSW 23 YSW C34 C24 C 0 1 N N N 164.628 198.655 184.538 -9.995 -1.469 0.060 C34 YSW 24 YSW C35 C25 C 0 1 N N N 164.514 197.414 185.334 -10.801 -2.593 -0.594 C35 YSW 25 YSW C36 C26 C 0 1 N N N 163.599 197.452 186.517 -12.296 -2.300 -0.448 C36 YSW 26 YSW C37 C27 C 0 1 N N N 164.182 196.809 187.745 -13.102 -3.425 -1.102 C37 YSW 27 YSW C38 C28 C 0 1 N N N 163.168 196.185 188.634 -14.596 -3.132 -0.956 C38 YSW 28 YSW C39 C29 C 0 1 N N N 163.602 195.561 189.936 -15.402 -4.256 -1.610 C39 YSW 29 YSW N25 N1 N 0 1 N N N 169.589 195.977 171.377 2.585 1.157 -4.156 N25 YSW 30 YSW O13 O1 O 0 1 N N N 159.562 199.478 177.665 2.674 0.619 3.167 O13 YSW 31 YSW O14 O2 O 0 1 N N N 161.320 198.201 177.814 1.127 1.145 1.679 O14 YSW 32 YSW O18 O3 O 0 1 N N N 164.743 198.194 174.564 0.095 2.680 0.176 O18 YSW 33 YSW O20 O4 O 0 1 N N N 165.865 196.172 175.242 1.196 4.828 -0.561 O20 YSW 34 YSW O21 O5 O 0 1 N N N 166.956 198.502 175.429 -0.663 3.927 -2.011 O21 YSW 35 YSW O22 O6 O 0 1 N N N 166.635 197.178 173.144 1.688 2.755 -1.914 O22 YSW 36 YSW O26 O7 O 0 1 N N N 164.732 198.463 177.368 -1.764 0.965 1.567 O26 YSW 37 YSW O28 O8 O 0 1 N N N 164.980 200.508 176.597 -3.677 1.938 2.095 O28 YSW 38 YSW P19 P1 P 0 1 N N N 166.177 197.492 174.644 0.592 3.575 -1.066 P19 YSW 39 YSW H1 H1 H 0 1 N N N 158.610 194.385 190.129 14.169 -5.326 -1.924 H1 YSW 40 YSW H2 H2 H 0 1 N N N 157.769 195.939 189.806 14.834 -3.678 -2.034 H2 YSW 41 YSW H3 H3 H 0 1 N N N 157.425 194.503 188.783 15.552 -4.855 -0.907 H3 YSW 42 YSW H4 H4 H 0 1 N N N 159.711 194.549 187.952 13.449 -4.879 0.407 H4 YSW 43 YSW H5 H5 H 0 1 N N N 160.054 195.985 188.975 14.114 -3.232 0.296 H5 YSW 44 YSW H6 H6 H 0 1 N N N 159.024 197.308 187.521 12.568 -2.732 -1.576 H6 YSW 45 YSW H7 H7 H 0 1 N N N 157.520 196.343 187.705 11.902 -4.379 -1.466 H7 YSW 46 YSW H8 H8 H 0 1 N N N 157.687 195.658 185.670 11.182 -3.933 0.864 H8 YSW 47 YSW H9 H9 H 0 1 N N N 159.297 194.942 186.021 11.848 -2.286 0.754 H9 YSW 48 YSW H10 H10 H 0 1 N N N 160.357 196.523 185.010 10.301 -1.786 -1.118 H10 YSW 49 YSW H11 H11 H 0 1 N N N 159.325 197.807 185.727 9.636 -3.433 -1.008 H11 YSW 50 YSW H12 H12 H 0 1 N N N 157.619 196.749 183.973 8.916 -2.987 1.322 H12 YSW 51 YSW H13 H13 H 0 1 N N N 159.180 196.429 183.144 9.581 -1.339 1.212 H13 YSW 52 YSW H14 H14 H 0 1 N N N 159.500 198.972 184.118 8.035 -0.840 -0.661 H14 YSW 53 YSW H15 H15 H 0 1 N N N 157.766 198.930 183.654 7.369 -2.487 -0.551 H15 YSW 54 YSW H16 H16 H 0 1 N N N 159.134 199.703 181.862 6.649 -2.040 1.780 H16 YSW 55 YSW H17 H17 H 0 1 N N N 158.378 198.121 181.473 7.315 -0.393 1.670 H17 YSW 56 YSW H18 H18 H 0 1 N N N 160.474 197.079 182.351 5.768 0.106 -0.203 H18 YSW 57 YSW H19 H19 H 0 1 N N N 161.181 198.729 182.309 5.102 -1.541 -0.093 H19 YSW 58 YSW H20 H20 H 0 1 N N N 159.995 197.188 179.986 4.383 -1.094 2.238 H20 YSW 59 YSW H21 H21 H 0 1 N N N 161.732 197.529 180.290 5.048 0.553 2.128 H21 YSW 60 YSW H22 H22 H 0 1 N N N 161.489 199.759 179.911 3.501 1.053 0.255 H22 YSW 61 YSW H23 H23 H 0 1 N N N 159.709 199.703 180.142 2.836 -0.595 0.365 H23 YSW 62 YSW H24 H24 H 0 1 N N N 162.608 199.794 177.444 0.750 2.369 3.325 H24 YSW 63 YSW H25 H25 H 0 1 N N N 161.840 199.065 175.993 0.085 0.722 3.435 H25 YSW 64 YSW H26 H26 H 0 1 N N N 163.252 197.012 177.323 -1.676 2.464 3.016 H26 YSW 65 YSW H27 H27 H 0 1 N N N 162.729 197.830 174.824 -1.741 3.462 0.711 H27 YSW 66 YSW H28 H28 H 0 1 N N N 163.833 196.495 175.299 -0.356 4.030 1.674 H28 YSW 67 YSW H29 H29 H 0 1 N N N 167.308 195.347 172.371 2.965 4.186 -2.683 H29 YSW 68 YSW H30 H30 H 0 1 N N N 168.165 195.922 173.841 1.689 3.623 -3.789 H30 YSW 69 YSW H31 H31 H 0 1 N N N 169.290 197.626 172.660 3.961 2.728 -4.379 H31 YSW 70 YSW H32 H32 H 0 1 N N N 168.159 197.525 171.268 4.008 1.903 -2.803 H32 YSW 71 YSW H33 H33 H 0 1 N N N 166.251 200.169 179.173 -3.643 -0.162 -0.128 H33 YSW 72 YSW H34 H34 H 0 1 N N N 164.897 201.334 178.983 -3.665 -1.044 1.418 H34 YSW 73 YSW H35 H35 H 0 1 N N N 163.352 199.472 179.701 -5.650 0.259 2.133 H35 YSW 74 YSW H36 H36 H 0 1 N N N 164.822 198.533 180.130 -5.628 1.141 0.587 H36 YSW 75 YSW H37 H37 H 0 1 N N N 165.506 200.233 181.707 -5.943 -0.993 -0.636 H37 YSW 76 YSW H38 H38 H 0 1 N N N 164.140 201.290 181.212 -5.966 -1.876 0.910 H38 YSW 77 YSW H39 H39 H 0 1 N N N 163.521 200.471 183.261 -7.951 -0.573 1.625 H39 YSW 78 YSW H40 H40 H 0 1 N N N 162.633 199.442 182.088 -7.929 0.309 0.079 H40 YSW 79 YSW H41 H41 H 0 1 N N N 163.438 197.680 183.098 -8.244 -1.825 -1.143 H41 YSW 80 YSW H42 H42 H 0 1 N N N 165.076 198.160 182.539 -8.266 -2.707 0.402 H42 YSW 81 YSW H43 H43 H 0 1 N N N 165.678 198.984 184.548 -10.252 -1.405 1.117 H43 YSW 82 YSW H44 H44 H 0 1 N N N 163.997 199.428 185.000 -10.229 -0.523 -0.429 H44 YSW 83 YSW H45 H45 H 0 1 N N N 164.156 196.620 184.662 -10.545 -2.657 -1.651 H45 YSW 84 YSW H46 H46 H 0 1 N N N 165.520 197.160 185.700 -10.567 -3.539 -0.106 H46 YSW 85 YSW H47 H47 H 0 1 N N N 163.372 198.503 186.748 -12.552 -2.237 0.609 H47 YSW 86 YSW H48 H48 H 0 1 N N N 162.669 196.925 186.256 -12.530 -1.354 -0.937 H48 YSW 87 YSW H49 H49 H 0 1 N N N 164.890 196.030 187.426 -12.845 -3.489 -2.159 H49 YSW 88 YSW H50 H50 H 0 1 N N N 164.719 197.579 188.318 -12.867 -4.371 -0.613 H50 YSW 89 YSW H51 H51 H 0 1 N N N 162.437 196.968 188.883 -14.853 -3.068 0.101 H51 YSW 90 YSW H52 H52 H 0 1 N N N 162.674 195.394 188.050 -14.830 -2.186 -1.445 H52 YSW 91 YSW H53 H53 H 0 1 N N N 162.724 195.152 190.458 -16.467 -4.048 -1.506 H53 YSW 92 YSW H54 H54 H 0 1 N N N 164.318 194.751 189.734 -15.146 -4.320 -2.667 H54 YSW 93 YSW H55 H55 H 0 1 N N N 164.081 196.325 190.567 -15.168 -5.202 -1.121 H55 YSW 94 YSW H56 H56 H 0 1 N N N 170.248 196.467 170.806 3.196 0.453 -4.543 H56 YSW 95 YSW H57 H57 H 0 1 N N N 170.077 195.449 172.072 1.968 0.759 -3.463 H57 YSW 96 YSW H59 H59 H 0 1 N N N 167.171 198.143 176.282 -1.109 3.151 -2.378 H59 YSW 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSW N25 C24 SING N N 1 YSW C24 C23 SING N N 2 YSW C23 O22 SING N N 3 YSW O22 P19 SING N N 4 YSW O18 P19 SING N N 5 YSW O18 C17 SING N N 6 YSW P19 O20 DOUB N N 7 YSW P19 O21 SING N N 8 YSW C17 C16 SING N N 9 YSW O28 C27 DOUB N N 10 YSW C16 C15 SING N N 11 YSW C16 O26 SING N N 12 YSW C15 O14 SING N N 13 YSW O26 C27 SING N N 14 YSW C27 C29 SING N N 15 YSW O13 C12 DOUB N N 16 YSW O14 C12 SING N N 17 YSW C12 C11 SING N N 18 YSW C29 C30 SING N N 19 YSW C11 C10 SING N N 20 YSW C30 C31 SING N N 21 YSW C10 C09 SING N N 22 YSW C31 C32 SING N N 23 YSW C09 C08 SING N N 24 YSW C08 C07 SING N N 25 YSW C32 C33 SING N N 26 YSW C33 C34 SING N N 27 YSW C07 C06 SING N N 28 YSW C06 C05 SING N N 29 YSW C34 C35 SING N N 30 YSW C05 C04 SING N N 31 YSW C35 C36 SING N N 32 YSW C04 C03 SING N N 33 YSW C36 C37 SING N N 34 YSW C03 C02 SING N N 35 YSW C37 C38 SING N N 36 YSW C02 C01 SING N N 37 YSW C38 C39 SING N N 38 YSW C01 H1 SING N N 39 YSW C01 H2 SING N N 40 YSW C01 H3 SING N N 41 YSW C02 H4 SING N N 42 YSW C02 H5 SING N N 43 YSW C03 H6 SING N N 44 YSW C03 H7 SING N N 45 YSW C04 H8 SING N N 46 YSW C04 H9 SING N N 47 YSW C05 H10 SING N N 48 YSW C05 H11 SING N N 49 YSW C06 H12 SING N N 50 YSW C06 H13 SING N N 51 YSW C07 H14 SING N N 52 YSW C07 H15 SING N N 53 YSW C08 H16 SING N N 54 YSW C08 H17 SING N N 55 YSW C09 H18 SING N N 56 YSW C09 H19 SING N N 57 YSW C10 H20 SING N N 58 YSW C10 H21 SING N N 59 YSW C11 H22 SING N N 60 YSW C11 H23 SING N N 61 YSW C15 H24 SING N N 62 YSW C15 H25 SING N N 63 YSW C16 H26 SING N N 64 YSW C17 H27 SING N N 65 YSW C17 H28 SING N N 66 YSW C23 H29 SING N N 67 YSW C23 H30 SING N N 68 YSW C24 H31 SING N N 69 YSW C24 H32 SING N N 70 YSW C29 H33 SING N N 71 YSW C29 H34 SING N N 72 YSW C30 H35 SING N N 73 YSW C30 H36 SING N N 74 YSW C31 H37 SING N N 75 YSW C31 H38 SING N N 76 YSW C32 H39 SING N N 77 YSW C32 H40 SING N N 78 YSW C33 H41 SING N N 79 YSW C33 H42 SING N N 80 YSW C34 H43 SING N N 81 YSW C34 H44 SING N N 82 YSW C35 H45 SING N N 83 YSW C35 H46 SING N N 84 YSW C36 H47 SING N N 85 YSW C36 H48 SING N N 86 YSW C37 H49 SING N N 87 YSW C37 H50 SING N N 88 YSW C38 H51 SING N N 89 YSW C38 H52 SING N N 90 YSW C39 H53 SING N N 91 YSW C39 H54 SING N N 92 YSW C39 H55 SING N N 93 YSW N25 H56 SING N N 94 YSW N25 H57 SING N N 95 YSW O21 H59 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSW SMILES ACDLabs 12.01 "NCCOP(O)(=O)OCC(COC(=O)CCCCCCCCCCC)OC(=O)CCCCCCCCCCC" YSW InChI InChI 1.06 "InChI=1S/C29H58NO8P/c1-3-5-7-9-11-13-15-17-19-21-28(31)35-25-27(26-37-39(33,34)36-24-23-30)38-29(32)22-20-18-16-14-12-10-8-6-4-2/h27H,3-26,30H2,1-2H3,(H,33,34)/t27-/m0/s1" YSW InChIKey InChI 1.06 ZLGYVWRJIZPQMM-MHZLTWQESA-N YSW SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCC(=O)OC[C@@H](CO[P](O)(=O)OCCN)OC(=O)CCCCCCCCCCC" YSW SMILES CACTVS 3.385 "CCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCCCCCCCCC" YSW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCC(=O)OC[C@@H](COP(=O)(O)OCCN)OC(=O)CCCCCCCCCCC" YSW SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCCCCCCCCC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSW "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl dodecanoate" YSW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-dodecanoyloxy-propyl] dodecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSW "Create component" 2023-02-17 RCSB YSW "Initial release" 2023-03-22 RCSB #