data_YSX # _chem_comp.id YSX _chem_comp.name "7-[(1~{S})-1-[3-(3-azanylpropyl)-2,5-bis(oxidanylidene)imidazolidin-1-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 F N4 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.568 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PG6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSX C10 C1 C 0 1 Y N N N N N -21.841 -11.758 9.960 0.931 -0.148 -0.404 C10 YSX 1 YSX C11 C2 C 0 1 Y N N N N N -21.250 -11.923 8.584 2.344 -0.402 -0.048 C11 YSX 2 YSX C12 C3 C 0 1 Y N N N N N -21.475 -13.057 7.828 3.226 -0.913 -1.000 C12 YSX 3 YSX C13 C4 C 0 1 Y N N N N N -20.924 -13.167 6.566 4.544 -1.148 -0.660 C13 YSX 4 YSX C15 C5 C 0 1 Y N N N N N -20.128 -12.159 6.038 4.990 -0.877 0.623 C15 YSX 5 YSX C16 C6 C 0 1 N N N N N N -19.482 -12.323 4.678 6.429 -1.135 0.988 C16 YSX 6 YSX C18 C7 C 0 1 N N N N N N -20.831 -9.926 3.669 9.073 -0.177 1.160 C18 YSX 7 YSX C21 C8 C 0 1 Y N N N N N -19.874 -11.047 6.819 4.119 -0.370 1.571 C21 YSX 8 YSX C22 C9 C 0 1 Y N N N N N -20.426 -10.915 8.077 2.802 -0.126 1.242 C22 YSX 9 YSX C23 C10 C 0 1 Y N N N N N -21.892 -12.738 10.988 0.259 1.156 -0.457 C23 YSX 10 YSX C24 C11 C 0 1 Y N N N N N -21.514 -14.095 11.081 0.677 2.465 -0.210 C24 YSX 11 YSX C25 C12 C 0 1 Y N N N N N -21.783 -14.784 12.277 -0.207 3.498 -0.349 C25 YSX 12 YSX C26 C13 C 0 1 Y N N N N N -22.380 -14.134 13.368 -1.519 3.256 -0.733 C26 YSX 13 YSX C01 C14 C 0 1 N N N N N N -22.774 -12.296 15.818 -4.014 3.042 -1.853 C01 YSX 14 YSX C02 C15 C 0 1 N N S N N N -23.400 -12.017 14.461 -3.380 1.725 -1.398 C02 YSX 15 YSX C03 C16 C 0 1 Y N N N N N -22.744 -12.788 13.305 -1.953 1.973 -0.982 C03 YSX 16 YSX C04 C17 C 0 1 Y N N N N N -22.486 -12.101 12.090 -1.070 0.904 -0.847 C04 YSX 17 YSX C06 C18 C 0 1 Y N N N N N -22.379 -10.587 10.485 -0.017 -1.092 -0.760 C06 YSX 18 YSX C07 C19 C 0 1 N N N N N N -22.644 -9.291 9.787 0.212 -2.537 -0.842 C07 YSX 19 YSX C28 C20 C 0 1 N N N N N N -25.787 -11.465 13.704 -4.260 1.810 0.925 C28 YSX 20 YSX C30 C21 C 0 1 N N N N N N -27.174 -11.992 13.859 -5.114 0.894 1.779 C30 YSX 21 YSX C32 C22 C 0 1 N N N N N N -28.134 -14.073 15.077 -6.190 -1.434 1.213 C32 YSX 22 YSX C33 C23 C 0 1 N N N N N N -29.240 -13.462 15.948 -7.656 -1.182 0.851 C33 YSX 23 YSX C34 C24 C 0 1 N N N N N N -30.009 -14.547 16.704 -8.485 -2.423 1.189 C34 YSX 24 YSX C36 C25 C 0 1 N N N N N N -25.633 -13.350 15.018 -4.783 0.017 -0.279 C36 YSX 25 YSX F14 F1 F 0 1 N N N N N N -21.183 -14.284 5.827 5.400 -1.643 -1.581 F14 YSX 26 YSX N05 N1 N 0 1 Y N N N N N -22.754 -10.807 11.744 -1.211 -0.453 -1.023 N05 YSX 27 YSX N27 N2 N 0 1 N N N N N N -24.862 -12.269 14.431 -4.134 1.187 -0.263 N27 YSX 28 YSX N31 N3 N 0 1 N N N N N N -27.039 -13.169 14.707 -5.397 -0.246 0.889 N31 YSX 29 YSX N35 N4 N 0 1 N N N N N N -31.233 -14.007 17.287 -9.892 -2.181 0.842 N35 YSX 30 YSX O08 O1 O 0 1 N N N N N N -23.023 -9.272 8.579 1.309 -2.995 -0.587 O08 YSX 31 YSX O09 O2 O 0 1 N N N N N N -22.586 -8.201 10.465 -0.796 -3.359 -1.202 O09 YSX 32 YSX O19 O3 O 0 1 N N N N N N -21.761 -12.375 3.315 7.418 0.590 -0.743 O19 YSX 33 YSX O20 O4 O 0 1 N N N N N N -19.863 -11.795 2.054 6.982 1.384 1.535 O20 YSX 34 YSX O29 O5 O 0 1 N N N N N N -25.463 -10.486 13.066 -3.792 2.882 1.244 O29 YSX 35 YSX O37 O6 O 0 1 N N N N N N -25.157 -14.238 15.637 -4.815 -0.725 -1.241 O37 YSX 36 YSX S17 S1 S 0 1 N N N N N N -20.498 -11.672 3.341 7.413 0.352 0.658 S17 YSX 37 YSX H121 H1 H 0 0 N N N N N N -22.082 -13.858 8.224 2.878 -1.125 -2.001 H121 YSX 38 YSX H161 H2 H 0 0 N N N N N N -19.308 -13.394 4.498 6.496 -1.387 2.047 H161 YSX 39 YSX H162 H3 H 0 0 N N N N N N -18.519 -11.791 4.679 6.812 -1.964 0.393 H162 YSX 40 YSX H183 H4 H 0 0 N N N N N N -21.316 -9.823 4.651 9.777 0.641 1.009 H183 YSX 41 YSX H181 H5 H 0 0 N N N N N N -19.884 -9.366 3.667 9.062 -0.458 2.214 H181 YSX 42 YSX H182 H6 H 0 0 N N N N N N -21.495 -9.526 2.888 9.379 -1.034 0.559 H182 YSX 43 YSX H211 H7 H 0 0 N N N N N N -19.232 -10.267 6.438 4.472 -0.160 2.570 H211 YSX 44 YSX H221 H8 H 0 0 N N N N N N -20.222 -10.035 8.668 2.123 0.270 1.983 H221 YSX 45 YSX H241 H9 H 0 0 N N N N N N -21.030 -14.592 10.253 1.696 2.661 0.090 H241 YSX 46 YSX H251 H10 H 0 0 N N N N N N -21.526 -15.830 12.357 0.117 4.510 -0.158 H251 YSX 47 YSX H261 H11 H 0 0 N N N N N N -22.562 -14.688 14.277 -2.207 4.082 -0.838 H261 YSX 48 YSX H013 H12 H 0 0 N N N N N N -23.295 -11.711 16.590 -3.994 3.758 -1.032 H013 YSX 49 YSX H011 H13 H 0 0 N N N N N N -22.862 -13.368 16.049 -3.453 3.442 -2.698 H011 YSX 50 YSX H012 H14 H 0 0 N N N N N N -21.712 -12.011 15.797 -5.046 2.863 -2.155 H012 YSX 51 YSX H021 H15 H 0 0 N N N N N N -23.248 -10.947 14.253 -3.400 1.010 -2.220 H021 YSX 52 YSX H301 H16 H 0 0 N N N N N N -27.821 -11.242 14.338 -4.562 0.565 2.659 H301 YSX 53 YSX H302 H17 H 0 0 N N N N N N -27.594 -12.267 12.880 -6.039 1.392 2.070 H302 YSX 54 YSX H321 H18 H 0 0 N N N N N N -28.598 -14.438 14.149 -6.110 -1.645 2.279 H321 YSX 55 YSX H322 H19 H 0 0 N N N N N N -27.700 -14.921 15.628 -5.817 -2.286 0.645 H322 YSX 56 YSX H331 H20 H 0 0 N N N N N N -28.785 -12.772 16.674 -8.029 -0.330 1.419 H331 YSX 57 YSX H332 H21 H 0 0 N N N N N N -29.939 -12.908 15.304 -7.736 -0.971 -0.215 H332 YSX 58 YSX H342 H22 H 0 0 N N N N N N -30.269 -15.357 16.006 -8.112 -3.275 0.621 H342 YSX 59 YSX H341 H23 H 0 0 N N N N N N -29.373 -14.946 17.508 -8.405 -2.634 2.256 H341 YSX 60 YSX H051 H24 H 0 0 N N N N N N -23.170 -10.126 12.347 -2.030 -0.896 -1.293 H051 YSX 61 YSX H352 H25 H 0 0 N N N N N N -31.718 -14.732 17.775 -9.985 -1.920 -0.128 H352 YSX 62 YSX H1 H26 H 0 1 N N N N N N -31.002 -13.272 17.925 -10.460 -2.986 1.056 H1 YSX 63 YSX H2 H28 H 0 1 N N N N N N -22.858 -7.473 9.919 -0.550 -4.294 -1.229 H2 YSX 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSX O20 S17 DOUB N N 1 YSX O19 S17 DOUB N N 2 YSX S17 C18 SING N N 3 YSX S17 C16 SING N N 4 YSX C16 C15 SING N N 5 YSX F14 C13 SING N N 6 YSX C15 C13 DOUB Y N 7 YSX C15 C21 SING Y N 8 YSX C13 C12 SING Y N 9 YSX C21 C22 DOUB Y N 10 YSX C12 C11 DOUB Y N 11 YSX C22 C11 SING Y N 12 YSX O08 C07 DOUB N N 13 YSX C11 C10 SING N N 14 YSX C07 O09 SING N N 15 YSX C07 C06 SING N N 16 YSX C10 C06 DOUB Y N 17 YSX C10 C23 SING Y N 18 YSX C06 N05 SING Y N 19 YSX C23 C24 DOUB Y N 20 YSX C23 C04 SING Y N 21 YSX C24 C25 SING Y N 22 YSX N05 C04 SING Y N 23 YSX C04 C03 DOUB Y N 24 YSX C25 C26 DOUB Y N 25 YSX O29 C28 DOUB N N 26 YSX C03 C26 SING Y N 27 YSX C03 C02 SING N N 28 YSX C28 C30 SING N N 29 YSX C28 N27 SING N N 30 YSX C30 N31 SING N N 31 YSX N27 C02 SING N N 32 YSX N27 C36 SING N N 33 YSX C02 C01 SING N N 34 YSX N31 C36 SING N N 35 YSX N31 C32 SING N N 36 YSX C36 O37 DOUB N N 37 YSX C32 C33 SING N N 38 YSX C33 C34 SING N N 39 YSX C34 N35 SING N N 40 YSX C12 H121 SING N N 41 YSX C16 H161 SING N N 42 YSX C16 H162 SING N N 43 YSX C18 H183 SING N N 44 YSX C18 H181 SING N N 45 YSX C18 H182 SING N N 46 YSX C21 H211 SING N N 47 YSX C22 H221 SING N N 48 YSX C24 H241 SING N N 49 YSX C25 H251 SING N N 50 YSX C26 H261 SING N N 51 YSX C01 H013 SING N N 52 YSX C01 H011 SING N N 53 YSX C01 H012 SING N N 54 YSX C02 H021 SING N N 55 YSX C30 H301 SING N N 56 YSX C30 H302 SING N N 57 YSX C32 H321 SING N N 58 YSX C32 H322 SING N N 59 YSX C33 H331 SING N N 60 YSX C33 H332 SING N N 61 YSX C34 H342 SING N N 62 YSX C34 H341 SING N N 63 YSX N05 H051 SING N N 64 YSX N35 H352 SING N N 65 YSX N35 H1 SING N N 66 YSX O09 H2 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSX InChI InChI 1.06 "InChI=1S/C25H27FN4O6S/c1-14(30-20(31)12-29(25(30)34)10-4-9-27)17-5-3-6-18-21(23(24(32)33)28-22(17)18)15-7-8-16(19(26)11-15)13-37(2,35)36/h3,5-8,11,14,28H,4,9-10,12-13,27H2,1-2H3,(H,32,33)/t14-/m0/s1" YSX InChIKey InChI 1.06 XOMHMYMNGWYVNR-AWEZNQCLSA-N YSX SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C(=O)CN(CCCN)C1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YSX SMILES CACTVS 3.385 "C[CH](N1C(=O)CN(CCCN)C1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YSX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C(=O)CN(C4=O)CCCN" YSX SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C(=O)CN(C4=O)CCCN" # _pdbx_chem_comp_identifier.comp_id YSX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[3-(3-azanylpropyl)-2,5-bis(oxidanylidene)imidazolidin-1-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSX "Create component" 2023-06-20 PDBE YSX "Initial release" 2024-07-10 RCSB #