data_YT0
#
_chem_comp.id YT0
_chem_comp.name "[1-{5-methyl-2-[(3-methyl-1,2-thiazol-5-yl)amino]pyrimidin-4-yl}-3-(4-methylpiperazin-1-yl)azetidin-3-yl]acetonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H26 N8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-20
_chem_comp.pdbx_modified_date 2023-06-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 398.528
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YT0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8G8O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YT0 C1 C1 C 0 1 N N N 18.692 16.956 22.025 7.841 1.473 1.281 C1 YT0 1
YT0 C2 C2 C 0 1 Y N N 18.154 18.072 21.186 6.618 0.713 0.837 C2 YT0 2
YT0 C3 C3 C 0 1 Y N N 17.000 18.853 21.433 5.351 1.218 1.020 C3 YT0 3
YT0 C4 C4 C 0 1 Y N N 16.892 19.917 20.608 4.351 0.417 0.567 C4 YT0 4
YT0 C5 C5 C 0 1 Y N N 15.786 22.040 20.028 2.089 -0.263 0.105 C5 YT0 5
YT0 C6 C6 C 0 1 Y N N 14.677 24.028 19.795 1.735 -2.295 -0.926 C6 YT0 6
YT0 C7 C7 C 0 1 Y N N 15.490 24.406 18.752 0.373 -2.070 -0.888 C7 YT0 7
YT0 N1 N1 N 0 1 N N N 15.890 20.837 20.692 2.981 0.666 0.616 N1 YT0 8
YT0 C8 C8 C 0 1 N N N 15.275 25.755 18.112 -0.591 -3.084 -1.446 C8 YT0 9
YT0 C9 C9 C 0 1 Y N N 16.502 23.485 18.378 -0.091 -0.885 -0.311 C9 YT0 10
YT0 C10 C10 C 0 1 N N N 18.464 22.804 16.823 -1.703 0.683 0.397 C10 YT0 11
YT0 C11 C11 C 0 1 N N N 18.309 23.522 15.447 -2.777 0.941 -0.669 C11 YT0 12
YT0 C12 C12 C 0 1 N N N 17.767 22.568 14.398 -2.805 2.377 -1.194 C12 YT0 13
YT0 C13 C13 C 0 1 N N N 16.321 22.588 14.195 -1.429 2.839 -1.436 C13 YT0 14
YT0 C14 C14 C 0 1 N N N 19.631 24.996 13.994 -4.859 1.393 0.482 C14 YT0 15
YT0 C15 C15 C 0 1 N N N 20.991 25.645 13.843 -6.263 0.848 0.755 C15 YT0 16
YT0 N2 N2 N 0 1 Y N N 14.807 22.865 20.439 2.557 -1.383 -0.427 N2 YT0 17
YT0 C16 C16 C 0 1 N N N 23.327 25.270 13.439 -7.487 -0.961 1.801 C16 YT0 18
YT0 C17 C17 C 0 1 N N N 22.026 23.607 14.561 -5.405 -1.413 0.650 C17 YT0 19
YT0 C18 C18 C 0 1 N N N 20.667 22.981 14.778 -4.001 -0.868 0.377 C18 YT0 20
YT0 C19 C19 C 0 1 N N N 17.267 24.561 16.100 -1.926 -0.020 -1.511 C19 YT0 21
YT0 N3 N3 N 0 1 N N N 17.374 23.682 17.273 -1.449 -0.618 -0.251 N3 YT0 22
YT0 N4 N4 N 0 1 N N N 15.194 22.579 13.963 -0.366 3.195 -1.623 N4 YT0 23
YT0 N5 N5 N 0 1 N N N 19.668 24.019 15.091 -4.106 0.420 -0.322 N5 YT0 24
YT0 N6 N6 N 0 1 N N N 22.006 24.641 13.529 -6.158 -0.440 1.454 N6 YT0 25
YT0 N7 N7 N 0 1 Y N N 16.642 22.316 19.023 0.790 -0.012 0.166 N7 YT0 26
YT0 S1 S1 S 0 1 Y N N 18.115 19.828 19.398 5.135 -0.971 -0.082 S1 YT0 27
YT0 N8 N8 N 0 1 Y N N 18.749 18.406 20.036 6.712 -0.448 0.258 N8 YT0 28
YT0 H1 H1 H 0 1 N N N 19.580 16.526 21.539 8.087 1.199 2.307 H1 YT0 29
YT0 H2 H2 H 0 1 N N N 18.969 17.343 23.017 8.679 1.226 0.629 H2 YT0 30
YT0 H3 H3 H 0 1 N N N 17.923 16.178 22.137 7.643 2.543 1.229 H3 YT0 31
YT0 H4 H4 H 0 1 N N N 16.279 18.622 22.203 5.166 2.175 1.487 H4 YT0 32
YT0 H5 H5 H 0 1 N N N 13.896 24.704 20.109 2.127 -3.204 -1.357 H5 YT0 33
YT0 H6 H6 H 0 1 N N N 15.138 20.611 21.311 2.652 1.490 1.008 H6 YT0 34
YT0 H7 H7 H 0 1 N N N 14.566 25.656 17.277 -0.874 -3.787 -0.661 H7 YT0 35
YT0 H8 H8 H 0 1 N N N 14.868 26.454 18.858 -1.481 -2.575 -1.815 H8 YT0 36
YT0 H9 H9 H 0 1 N N N 16.234 26.139 17.735 -0.116 -3.625 -2.264 H9 YT0 37
YT0 H10 H10 H 0 1 N N N 18.226 21.730 16.818 -0.859 1.369 0.338 H10 YT0 38
YT0 H11 H11 H 0 1 N N N 19.429 22.963 17.326 -2.104 0.594 1.407 H11 YT0 39
YT0 H12 H12 H 0 1 N N N 18.050 21.547 14.694 -3.370 2.412 -2.126 H12 YT0 40
YT0 H13 H13 H 0 1 N N N 18.244 22.817 13.439 -3.281 3.024 -0.457 H13 YT0 41
YT0 H14 H14 H 0 1 N N N 18.880 25.768 14.217 -4.934 2.335 -0.062 H14 YT0 42
YT0 H15 H15 H 0 1 N N N 19.364 24.484 13.058 -4.343 1.560 1.428 H15 YT0 43
YT0 H16 H16 H 0 1 N N N 21.258 26.148 14.784 -6.813 1.555 1.376 H16 YT0 44
YT0 H17 H17 H 0 1 N N N 20.951 26.385 13.030 -6.788 0.708 -0.190 H17 YT0 45
YT0 H18 H18 H 0 1 N N N 24.082 24.506 13.203 -8.071 -1.103 0.891 H18 YT0 46
YT0 H19 H19 H 0 1 N N N 23.317 26.033 12.646 -7.381 -1.915 2.317 H19 YT0 47
YT0 H20 H20 H 0 1 N N N 23.574 25.744 14.401 -7.997 -0.250 2.452 H20 YT0 48
YT0 H21 H21 H 0 1 N N N 22.733 22.820 14.259 -5.921 -1.579 -0.296 H21 YT0 49
YT0 H22 H22 H 0 1 N N N 22.362 24.058 15.506 -5.331 -2.355 1.194 H22 YT0 50
YT0 H23 H23 H 0 1 N N N 20.363 22.449 13.865 -3.476 -0.727 1.322 H23 YT0 51
YT0 H24 H24 H 0 1 N N N 20.725 22.269 15.615 -3.451 -1.575 -0.244 H24 YT0 52
YT0 H25 H25 H 0 1 N N N 17.645 25.585 16.240 -2.518 -0.704 -2.120 H25 YT0 53
YT0 H26 H26 H 0 1 N N N 16.275 24.598 15.625 -1.141 0.479 -2.080 H26 YT0 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YT0 C16 N6 SING N N 1
YT0 N6 C15 SING N N 2
YT0 N6 C17 SING N N 3
YT0 C15 C14 SING N N 4
YT0 N4 C13 TRIP N N 5
YT0 C14 N5 SING N N 6
YT0 C13 C12 SING N N 7
YT0 C12 C11 SING N N 8
YT0 C17 C18 SING N N 9
YT0 C18 N5 SING N N 10
YT0 N5 C11 SING N N 11
YT0 C11 C19 SING N N 12
YT0 C11 C10 SING N N 13
YT0 C19 N3 SING N N 14
YT0 C10 N3 SING N N 15
YT0 N3 C9 SING N N 16
YT0 C8 C7 SING N N 17
YT0 C9 C7 DOUB Y N 18
YT0 C9 N7 SING Y N 19
YT0 C7 C6 SING Y N 20
YT0 N7 C5 DOUB Y N 21
YT0 S1 N8 SING Y N 22
YT0 S1 C4 SING Y N 23
YT0 C6 N2 DOUB Y N 24
YT0 C5 N2 SING Y N 25
YT0 C5 N1 SING N N 26
YT0 N8 C2 DOUB Y N 27
YT0 C4 N1 SING N N 28
YT0 C4 C3 DOUB Y N 29
YT0 C2 C3 SING Y N 30
YT0 C2 C1 SING N N 31
YT0 C1 H1 SING N N 32
YT0 C1 H2 SING N N 33
YT0 C1 H3 SING N N 34
YT0 C3 H4 SING N N 35
YT0 C6 H5 SING N N 36
YT0 N1 H6 SING N N 37
YT0 C8 H7 SING N N 38
YT0 C8 H8 SING N N 39
YT0 C8 H9 SING N N 40
YT0 C10 H10 SING N N 41
YT0 C10 H11 SING N N 42
YT0 C12 H12 SING N N 43
YT0 C12 H13 SING N N 44
YT0 C14 H14 SING N N 45
YT0 C14 H15 SING N N 46
YT0 C15 H16 SING N N 47
YT0 C15 H17 SING N N 48
YT0 C16 H18 SING N N 49
YT0 C16 H19 SING N N 50
YT0 C16 H20 SING N N 51
YT0 C17 H21 SING N N 52
YT0 C17 H22 SING N N 53
YT0 C18 H23 SING N N 54
YT0 C18 H24 SING N N 55
YT0 C19 H25 SING N N 56
YT0 C19 H26 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YT0 SMILES ACDLabs 12.01 "Cc1cc(Nc2ncc(C)c(n2)N2CC(CC#N)(C2)N2CCN(C)CC2)sn1"
YT0 InChI InChI 1.06 "InChI=1S/C19H26N8S/c1-14-11-21-18(22-16-10-15(2)24-28-16)23-17(14)26-12-19(13-26,4-5-20)27-8-6-25(3)7-9-27/h10-11H,4,6-9,12-13H2,1-3H3,(H,21,22,23)"
YT0 InChIKey InChI 1.06 VGBYAYCYPVFDTM-UHFFFAOYSA-N
YT0 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)C2(CC#N)CN(C2)c3nc(Nc4snc(C)c4)ncc3C"
YT0 SMILES CACTVS 3.385 "CN1CCN(CC1)C2(CC#N)CN(C2)c3nc(Nc4snc(C)c4)ncc3C"
YT0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(sn1)Nc2ncc(c(n2)N3CC(C3)(CC#N)N4CCN(CC4)C)C"
YT0 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(sn1)Nc2ncc(c(n2)N3CC(C3)(CC#N)N4CCN(CC4)C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YT0 "SYSTEMATIC NAME" ACDLabs 12.01 "[1-{5-methyl-2-[(3-methyl-1,2-thiazol-5-yl)amino]pyrimidin-4-yl}-3-(4-methylpiperazin-1-yl)azetidin-3-yl]acetonitrile"
YT0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[1-[5-methyl-2-[(3-methyl-1,2-thiazol-5-yl)amino]pyrimidin-4-yl]-3-(4-methylpiperazin-1-yl)azetidin-3-yl]ethanenitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YT0 "Create component" 2023-02-20 RCSB
YT0 "Initial release" 2023-06-21 RCSB
#