data_YT2 # _chem_comp.id YT2 _chem_comp.name "(1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2023-10-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.607 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YT2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T6G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YT2 C10 C1 C 0 1 N N N 18.473 -26.437 24.677 -3.843 1.197 -1.413 C10 YT2 1 YT2 C12 C2 C 0 1 N N N 17.059 -25.787 23.205 -6.081 1.122 -0.263 C12 YT2 2 YT2 C13 C3 C 0 1 Y N N 15.517 -25.760 22.968 -6.938 -0.052 0.167 C13 YT2 3 YT2 C14 C4 C 0 1 Y N N 14.862 -25.666 24.199 -6.223 -1.228 0.030 C14 YT2 4 YT2 C15 C5 C 0 1 N N S 15.913 -25.589 25.307 -4.836 -0.926 -0.499 C15 YT2 5 YT2 C18 C6 C 0 1 Y N N 12.694 -25.688 23.096 -8.109 -2.468 0.839 C18 YT2 6 YT2 C19 C7 C 0 1 Y N N 13.343 -25.786 21.846 -8.823 -1.292 0.978 C19 YT2 7 YT2 N21 N1 N 0 1 Y N N 20.315 -23.454 26.723 -0.101 -0.641 -0.266 N21 YT2 8 YT2 C22 C8 C 0 1 Y N N 20.958 -23.195 27.900 1.186 -0.973 -0.251 C22 YT2 9 YT2 C23 C9 C 0 1 Y N N 22.192 -23.746 28.151 2.159 0.020 -0.018 C23 YT2 10 YT2 C29 C10 C 0 1 Y N N 26.178 -24.447 30.221 7.123 -0.268 0.078 C29 YT2 11 YT2 C32 C11 C 0 1 Y N N 26.588 -23.582 27.614 6.913 -2.977 0.383 C32 YT2 12 YT2 C33 C12 C 0 1 Y N N 27.601 -24.246 28.364 8.134 -2.335 0.283 C33 YT2 13 YT2 C01 C13 C 0 1 N N N 23.165 -27.067 25.656 0.390 3.855 -0.854 C01 YT2 14 YT2 C02 C14 C 0 1 N N S 22.847 -25.700 25.046 0.091 3.028 0.398 C02 YT2 15 YT2 C03 C15 C 0 1 Y N N 22.137 -24.796 26.060 0.511 1.599 0.168 C03 YT2 16 YT2 C05 C16 C 0 1 Y N N 20.873 -24.230 25.802 -0.458 0.617 -0.062 C05 YT2 17 YT2 C07 C17 C 0 1 N N N 18.823 -23.617 24.355 -2.527 0.311 1.020 C07 YT2 18 YT2 C08 C18 C 0 1 N N N 17.598 -24.204 25.088 -3.964 0.841 1.067 C08 YT2 19 YT2 C09 C19 C 0 1 N N N 17.294 -25.573 24.697 -4.642 0.582 -0.272 C09 YT2 20 YT2 C11 C20 C 0 1 N N N 19.762 -25.862 24.083 -2.411 0.655 -1.379 C11 YT2 21 YT2 C17 C21 C 0 1 Y N N 13.450 -25.625 24.273 -6.812 -2.435 0.366 C17 YT2 22 YT2 C20 C22 C 0 1 Y N N 14.743 -25.819 21.777 -8.238 -0.087 0.642 C20 YT2 23 YT2 C24 C23 C 0 1 Y N N 22.591 -23.273 29.459 3.456 -0.659 -0.064 C24 YT2 24 YT2 C26 C24 C 0 1 N N N 23.630 -23.958 31.592 4.827 1.397 0.244 C26 YT2 25 YT2 C27 C25 C 0 1 N N N 24.875 -24.200 32.420 6.007 1.848 -0.628 C27 YT2 26 YT2 C28 C26 C 0 1 N N N 25.986 -24.944 31.696 7.291 1.221 -0.086 C28 YT2 27 YT2 C30 C27 C 0 1 Y N N 25.125 -23.791 29.543 5.865 -0.843 0.174 C30 YT2 28 YT2 C31 C28 C 0 1 Y N N 25.338 -23.347 28.210 5.753 -2.223 0.331 C31 YT2 29 YT2 N04 N2 N 0 1 Y N N 22.770 -24.539 27.224 1.787 1.283 0.185 N04 YT2 30 YT2 N06 N3 N 0 1 N N N 20.104 -24.446 24.554 -1.803 0.964 -0.078 N06 YT2 31 YT2 N16 N4 N 0 1 N N N 15.816 -26.763 26.143 -4.757 -1.241 -1.932 N16 YT2 32 YT2 N25 N5 N 0 1 N N N 23.819 -23.574 30.218 4.707 -0.062 0.115 N25 YT2 33 YT2 N34 N6 N 0 1 Y N N 27.372 -24.651 29.623 8.204 -1.028 0.137 N34 YT2 34 YT2 N35 N7 N 0 1 Y N N 21.602 -22.509 29.923 3.231 -1.924 -0.302 N35 YT2 35 YT2 N36 N8 N 0 1 Y N N 20.596 -22.441 28.985 1.857 -2.153 -0.422 N36 YT2 36 YT2 O37 O1 O 0 1 N N N 24.047 -25.069 24.696 0.813 3.565 1.508 O37 YT2 37 YT2 H101 H1 H 0 0 N N N 18.214 -27.334 24.096 -4.307 0.938 -2.365 H101 YT2 38 YT2 H102 H2 H 0 0 N N N 18.689 -26.724 25.717 -3.825 2.282 -1.302 H102 YT2 39 YT2 H121 H3 H 0 0 N N N 17.470 -26.759 22.895 -6.367 1.453 -1.261 H121 YT2 40 YT2 H122 H4 H 0 0 N N N 17.542 -24.984 22.629 -6.174 1.942 0.449 H122 YT2 41 YT2 H151 H5 H 0 0 N N N 15.757 -24.675 25.899 -4.088 -1.493 0.055 H151 YT2 42 YT2 H181 H6 H 0 0 N N N 11.615 -25.662 23.144 -8.565 -3.411 1.100 H181 YT2 43 YT2 H191 H7 H 0 0 N N N 12.759 -25.836 20.939 -9.837 -1.316 1.348 H191 YT2 44 YT2 H321 H8 H 0 0 N N N 26.779 -23.263 26.600 6.865 -4.049 0.504 H321 YT2 45 YT2 H331 H9 H 0 0 N N N 28.566 -24.426 27.914 9.044 -2.915 0.321 H331 YT2 46 YT2 H012 H10 H 0 0 N N N 22.228 -27.572 25.935 1.468 3.891 -1.017 H012 YT2 47 YT2 H013 H11 H 0 0 N N N 23.706 -27.680 24.920 -0.092 3.396 -1.717 H013 YT2 48 YT2 H011 H12 H 0 0 N N N 23.789 -26.932 26.552 0.009 4.868 -0.721 H011 YT2 49 YT2 H021 H13 H 0 0 N N N 22.200 -25.837 24.167 -0.978 3.063 0.609 H021 YT2 50 YT2 H072 H14 H 0 0 N N N 19.003 -22.600 24.734 -2.029 0.528 1.964 H072 YT2 51 YT2 H071 H15 H 0 0 N N N 18.599 -23.573 23.279 -2.543 -0.766 0.855 H071 YT2 52 YT2 H082 H16 H 0 0 N N N 17.797 -24.186 26.170 -4.514 0.330 1.858 H082 YT2 53 YT2 H081 H17 H 0 0 N N N 16.723 -23.575 24.865 -3.950 1.912 1.268 H081 YT2 54 YT2 H112 H18 H 0 0 N N N 19.657 -25.844 22.988 -2.427 -0.425 -1.525 H112 YT2 55 YT2 H111 H19 H 0 0 N N N 20.594 -26.526 24.360 -1.826 1.120 -2.173 H111 YT2 56 YT2 H171 H20 H 0 0 N N N 12.958 -25.546 25.231 -6.255 -3.354 0.257 H171 YT2 57 YT2 H201 H21 H 0 0 N N N 15.234 -25.889 20.818 -8.796 0.831 0.751 H201 YT2 58 YT2 H261 H22 H 0 0 N N N 23.056 -23.158 32.083 5.016 1.661 1.285 H261 YT2 59 YT2 H262 H23 H 0 0 N N N 23.043 -24.888 31.598 3.910 1.876 -0.098 H262 YT2 60 YT2 H272 H24 H 0 0 N N N 25.269 -23.224 32.740 5.846 1.522 -1.655 H272 YT2 61 YT2 H271 H25 H 0 0 N N N 24.589 -24.788 33.305 6.088 2.934 -0.598 H271 YT2 62 YT2 H282 H26 H 0 0 N N N 25.740 -26.016 31.678 7.530 1.665 0.880 H282 YT2 63 YT2 H281 H27 H 0 0 N N N 26.927 -24.793 32.245 8.108 1.416 -0.781 H281 YT2 64 YT2 H311 H28 H 0 0 N N N 24.555 -22.839 27.666 4.783 -2.693 0.409 H311 YT2 65 YT2 H163 H29 H 0 0 N N N 16.503 -26.714 26.868 -4.930 -2.221 -2.096 H163 YT2 66 YT2 H161 H30 H 0 0 N N N 14.904 -26.808 26.550 -5.393 -0.666 -2.464 H161 YT2 67 YT2 H361 H32 H 0 0 N N N 19.743 -21.927 29.080 1.444 -3.012 -0.599 H361 YT2 68 YT2 H371 H33 H 0 0 N N N 23.859 -24.219 24.316 0.592 4.484 1.713 H371 YT2 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YT2 C20 C19 DOUB Y N 1 YT2 C20 C13 SING Y N 2 YT2 C19 C18 SING Y N 3 YT2 C13 C12 SING N N 4 YT2 C13 C14 DOUB Y N 5 YT2 C18 C17 DOUB Y N 6 YT2 C12 C09 SING N N 7 YT2 C11 N06 SING N N 8 YT2 C11 C10 SING N N 9 YT2 C14 C17 SING Y N 10 YT2 C14 C15 SING N N 11 YT2 C07 N06 SING N N 12 YT2 C07 C08 SING N N 13 YT2 N06 C05 SING N N 14 YT2 C10 C09 SING N N 15 YT2 O37 C02 SING N N 16 YT2 C09 C08 SING N N 17 YT2 C09 C15 SING N N 18 YT2 C02 C01 SING N N 19 YT2 C02 C03 SING N N 20 YT2 C15 N16 SING N N 21 YT2 C05 C03 DOUB Y N 22 YT2 C05 N21 SING Y N 23 YT2 C03 N04 SING Y N 24 YT2 N21 C22 DOUB Y N 25 YT2 N04 C23 DOUB Y N 26 YT2 C32 C31 DOUB Y N 27 YT2 C32 C33 SING Y N 28 YT2 C22 C23 SING Y N 29 YT2 C22 N36 SING Y N 30 YT2 C23 C24 SING Y N 31 YT2 C31 C30 SING Y N 32 YT2 C33 N34 DOUB Y N 33 YT2 N36 N35 SING Y N 34 YT2 C24 N35 DOUB Y N 35 YT2 C24 N25 SING N N 36 YT2 C30 N25 SING N N 37 YT2 C30 C29 DOUB Y N 38 YT2 N34 C29 SING Y N 39 YT2 N25 C26 SING N N 40 YT2 C29 C28 SING N N 41 YT2 C26 C27 SING N N 42 YT2 C28 C27 SING N N 43 YT2 C10 H101 SING N N 44 YT2 C10 H102 SING N N 45 YT2 C12 H121 SING N N 46 YT2 C12 H122 SING N N 47 YT2 C15 H151 SING N N 48 YT2 C18 H181 SING N N 49 YT2 C19 H191 SING N N 50 YT2 C32 H321 SING N N 51 YT2 C33 H331 SING N N 52 YT2 C01 H012 SING N N 53 YT2 C01 H013 SING N N 54 YT2 C01 H011 SING N N 55 YT2 C02 H021 SING N N 56 YT2 C07 H072 SING N N 57 YT2 C07 H071 SING N N 58 YT2 C08 H082 SING N N 59 YT2 C08 H081 SING N N 60 YT2 C11 H112 SING N N 61 YT2 C11 H111 SING N N 62 YT2 C17 H171 SING N N 63 YT2 C20 H201 SING N N 64 YT2 C26 H261 SING N N 65 YT2 C26 H262 SING N N 66 YT2 C27 H272 SING N N 67 YT2 C27 H271 SING N N 68 YT2 C28 H282 SING N N 69 YT2 C28 H281 SING N N 70 YT2 C31 H311 SING N N 71 YT2 N16 H163 SING N N 72 YT2 N16 H161 SING N N 73 YT2 N36 H361 SING N N 74 YT2 O37 H371 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YT2 SMILES ACDLabs 12.01 "NC1c2ccccc2CC21CCN(CC2)c1nc2[NH]nc(c2nc1C(C)O)N1CCCc2ncccc21" YT2 InChI InChI 1.06 "InChI=1S/C28H32N8O/c1-17(37)22-26(35-14-10-28(11-15-35)16-18-6-2-3-7-19(18)24(28)29)32-25-23(31-22)27(34-33-25)36-13-5-8-20-21(36)9-4-12-30-20/h2-4,6-7,9,12,17,24,37H,5,8,10-11,13-16,29H2,1H3,(H,32,33,34)/t17-,24+/m0/s1" YT2 InChIKey InChI 1.06 JSFQOTHYMBHCNB-BXKMTCNYSA-N YT2 SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)c1nc2c([nH]nc2N3CCCc4ncccc34)nc1N5CCC6(CC5)Cc7ccccc7[C@H]6N" YT2 SMILES CACTVS 3.385 "C[CH](O)c1nc2c([nH]nc2N3CCCc4ncccc34)nc1N5CCC6(CC5)Cc7ccccc7[CH]6N" YT2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1c(nc2c(n1)c(n[nH]2)N3CCCc4c3cccn4)N5CCC6(CC5)Cc7ccccc7[C@H]6N)O" YT2 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1c(nc2c(n1)c(n[nH]2)N3CCCc4c3cccn4)N5CCC6(CC5)Cc7ccccc7C6N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YT2 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol" YT2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S})-1-[6-[(1~{S})-1-azanylspiro[1,3-dihydroindene-2,4'-piperidine]-1'-yl]-3-(3,4-dihydro-2~{H}-1,5-naphthyridin-1-yl)-1~{H}-pyrazolo[3,4-b]pyrazin-5-yl]ethanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YT2 "Create component" 2023-06-20 RCSB YT2 "Initial release" 2023-10-11 RCSB #