data_YT9 # _chem_comp.id YT9 _chem_comp.name "3-azanyl-3-(hydroxymethyl)-1,5,7,11-tetraoxa-6$l^{4}-boraspiro[5.5]undecan-9-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H15 B N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2023-10-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 220.008 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YT9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SUA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YT9 C3 C1 C 0 1 N N N 35.001 40.703 23.038 1.970 -1.248 0.480 C3 YT9 1 YT9 C2 C2 C 0 1 N N N 35.231 41.062 24.518 3.195 -0.343 0.292 C2 YT9 2 YT9 C1 C3 C 0 1 N N N 34.429 42.313 24.917 2.759 0.903 -0.489 C1 YT9 3 YT9 N N1 N 0 1 N N N 30.274 43.226 21.375 -2.615 0.965 -1.151 N YT9 4 YT9 C C4 C 0 1 N N N 31.084 42.079 20.926 -2.096 -0.124 -0.313 C YT9 5 YT9 B B1 B -1 1 N N N 32.834 41.629 23.209 0.554 0.610 0.259 B YT9 6 YT9 C1B C5 C 0 1 N N N 30.726 41.574 19.543 -3.184 -1.179 -0.105 C1B YT9 7 YT9 C2B C6 C 0 1 N N N 30.754 41.005 21.930 -1.651 0.436 1.044 C2B YT9 8 YT9 C3B C7 C 0 1 N N N 32.569 42.414 20.928 -0.878 -0.764 -0.993 C3B YT9 9 YT9 O1 O1 O 0 1 N N N 33.058 42.119 24.731 1.613 1.469 0.156 O1 YT9 10 YT9 O1B O2 O 0 1 N N N 29.353 41.353 19.416 -4.358 -0.555 0.421 O1B YT9 11 YT9 O2 O3 O 0 1 N N N 36.577 41.371 24.663 4.203 -1.043 -0.442 O2 YT9 12 YT9 O2B O4 O 0 1 N N N 31.245 41.201 23.228 -0.498 1.260 0.843 O2B YT9 13 YT9 O3 O5 O 0 1 N N N 33.678 40.310 23.038 0.904 -0.466 1.026 O3 YT9 14 YT9 O3B O6 O 0 1 N N N 33.013 42.747 22.221 0.197 0.180 -0.989 O3B YT9 15 YT9 H31 H1 H 0 1 N N N 35.661 39.883 22.719 1.667 -1.658 -0.484 H31 YT9 16 YT9 H32 H2 H 0 1 N N N 35.158 41.575 22.386 2.217 -2.060 1.164 H32 YT9 17 YT9 H21 H3 H 0 1 N N N 34.935 40.215 25.154 3.587 -0.049 1.265 H21 YT9 18 YT9 H12 H4 H 0 1 N N N 34.618 42.537 25.977 3.570 1.632 -0.499 H12 YT9 19 YT9 H11 H5 H 0 1 N N N 34.758 43.161 24.299 2.505 0.624 -1.512 H11 YT9 20 YT9 HN3 H6 H 0 1 N N N 30.566 43.502 22.291 -3.418 1.401 -0.722 HN3 YT9 21 YT9 HN2 H7 H 0 1 N N N 30.398 43.990 20.741 -1.896 1.645 -1.347 HN2 YT9 22 YT9 H1B1 H9 H 0 0 N N N 31.258 40.629 19.359 -3.420 -1.650 -1.059 H1B1 YT9 23 YT9 H1B2 H10 H 0 0 N N N 31.038 42.321 18.798 -2.829 -1.934 0.596 H1B2 YT9 24 YT9 H2B1 H11 H 0 0 N N N 29.658 40.930 21.993 -2.455 1.031 1.476 H2B1 YT9 25 YT9 H2B2 H12 H 0 0 N N N 31.166 40.057 21.555 -1.400 -0.386 1.715 H2B2 YT9 26 YT9 H3B2 H13 H 0 0 N N N 33.134 41.542 20.568 -0.582 -1.658 -0.446 H3B2 YT9 27 YT9 H3B1 H14 H 0 0 N N N 32.745 43.268 20.257 -1.130 -1.028 -2.020 H3B1 YT9 28 YT9 H1B3 H15 H 0 0 N N N 29.162 41.038 18.540 -5.091 -1.166 0.578 H1B3 YT9 29 YT9 H22 H16 H 0 1 N N N 36.754 41.598 25.568 5.006 -0.527 -0.596 H22 YT9 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YT9 O1B C1B SING N N 1 YT9 C1B C SING N N 2 YT9 C C3B SING N N 3 YT9 C N SING N N 4 YT9 C C2B SING N N 5 YT9 C3B O3B SING N N 6 YT9 C2B O2B SING N N 7 YT9 O3B B SING N N 8 YT9 C3 O3 SING N N 9 YT9 C3 C2 SING N N 10 YT9 O3 B SING N N 11 YT9 B O2B SING N N 12 YT9 B O1 SING N N 13 YT9 C2 O2 SING N N 14 YT9 C2 C1 SING N N 15 YT9 O1 C1 SING N N 16 YT9 C3 H31 SING N N 17 YT9 C3 H32 SING N N 18 YT9 C2 H21 SING N N 19 YT9 C1 H12 SING N N 20 YT9 C1 H11 SING N N 21 YT9 N HN3 SING N N 22 YT9 N HN2 SING N N 23 YT9 C1B H1B1 SING N N 24 YT9 C1B H1B2 SING N N 25 YT9 C2B H2B1 SING N N 26 YT9 C2B H2B2 SING N N 27 YT9 C3B H3B2 SING N N 28 YT9 C3B H3B1 SING N N 29 YT9 O1B H1B3 SING N N 30 YT9 O2 H22 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YT9 SMILES ACDLabs 12.01 "OCC1(N)CO[B-]2(OCC(O)CO2)OC1" YT9 InChI InChI 1.06 "InChI=1S/C7H15BNO6/c9-7(3-10)4-14-8(15-5-7)12-1-6(11)2-13-8/h6,10-11H,1-5,9H2/q-1/t6-,7-,8-/m0/s1" YT9 InChIKey InChI 1.06 NORKYMYNBIQBFM-FXQIFTODSA-N YT9 SMILES_CANONICAL CACTVS 3.385 "N[C]1(CO)CO[B-]2(OC[CH](O)CO2)OC1" YT9 SMILES CACTVS 3.385 "N[C]1(CO)CO[B-]2(OC[CH](O)CO2)OC1" YT9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]12(OCC(CO1)O)OCC(CO2)(CO)N" YT9 SMILES "OpenEye OEToolkits" 2.0.7 "[B-]12(OCC(CO1)O)OCC(CO2)(CO)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YT9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2S)-2-amino-2-[(hydroxy-kappaO)methyl]propane-1,3-diolato(2-)-kappaO~1~][(2S)-propane-1,2,3-triolato(2-)-kappa~2~O~1~,O~3~]borate(1-)" YT9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-azanyl-3-(hydroxymethyl)-1,5,7,11-tetraoxa-6-boranuidaspiro[5.5]undecan-9-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YT9 "Create component" 2023-06-20 RCSB YT9 "Initial release" 2023-11-01 RCSB #