data_YTC
#
_chem_comp.id YTC
_chem_comp.name "(3~{S},4~{S})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H24 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-03-18
_chem_comp.pdbx_modified_date 2021-12-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 400.422
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YTC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7E38
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YTC C01 C1 C 0 1 N N N -17.820 15.958 -18.622 -4.769 2.854 -1.412 C01 YTC 1
YTC C03 C2 C 0 1 Y N N -19.220 17.077 -20.156 -4.465 0.600 -0.716 C03 YTC 2
YTC C04 C3 C 0 1 Y N N -18.680 18.282 -19.726 -3.108 0.772 -0.946 C04 YTC 3
YTC C05 C4 C 0 1 Y N N -18.990 19.461 -20.387 -2.230 -0.271 -0.719 C05 YTC 4
YTC C06 C5 C 0 1 Y N N -19.851 19.433 -21.477 -2.699 -1.488 -0.261 C06 YTC 5
YTC C07 C6 C 0 1 Y N N -20.394 18.226 -21.906 -4.054 -1.667 -0.029 C07 YTC 6
YTC C08 C7 C 0 1 Y N N -20.076 17.052 -21.246 -4.940 -0.620 -0.251 C08 YTC 7
YTC C10 C8 C 0 1 N N N -19.886 15.212 -22.695 -6.750 -0.487 1.288 C10 YTC 8
YTC C12 C9 C 0 1 N N N -22.147 19.250 -23.105 -3.547 -3.895 0.633 C12 YTC 9
YTC C13 C10 C 0 1 N N N -18.394 20.789 -19.904 -0.756 -0.080 -0.971 C13 YTC 10
YTC C14 C11 C 0 1 N N S -16.837 20.803 -20.051 -0.082 0.429 0.305 C14 YTC 11
YTC C15 C12 C 0 1 N N S -16.356 22.141 -20.495 1.438 0.592 0.083 C15 YTC 12
YTC C16 C13 C 0 1 N N N -15.062 22.407 -19.684 1.663 2.102 0.311 C16 YTC 13
YTC C18 C14 C 0 1 N N N -16.213 20.602 -18.729 -0.572 1.823 0.641 C18 YTC 14
YTC C20 C15 C 0 1 N N N -16.018 22.157 -21.971 2.225 -0.232 1.103 C20 YTC 15
YTC C21 C16 C 0 1 Y N N -17.302 22.099 -22.797 3.696 -0.151 0.786 C21 YTC 16
YTC C22 C17 C 0 1 Y N N -17.448 21.120 -23.773 4.270 -1.075 -0.068 C22 YTC 17
YTC C23 C18 C 0 1 Y N N -18.639 21.060 -24.537 5.621 -1.000 -0.364 C23 YTC 18
YTC C24 C19 C 0 1 Y N N -19.643 21.960 -24.314 6.399 0.009 0.199 C24 YTC 19
YTC C25 C20 C 0 1 Y N N -19.494 22.958 -23.316 5.817 0.932 1.053 C25 YTC 20
YTC C26 C21 C 0 1 Y N N -18.325 23.018 -22.567 4.468 0.850 1.345 C26 YTC 21
YTC C28 C22 C 0 1 N N N -20.167 20.800 -26.173 7.599 -0.985 -1.400 C28 YTC 22
YTC O02 O1 O 0 1 N N N -18.910 15.881 -19.498 -5.329 1.627 -0.940 O02 YTC 23
YTC O09 O2 O 0 1 N N N -20.626 15.841 -21.685 -6.271 -0.792 -0.024 O09 YTC 24
YTC O11 O3 O 0 1 N N N -21.258 18.175 -23.008 -4.515 -2.865 0.421 O11 YTC 25
YTC O17 O4 O 0 1 N N N -14.966 21.385 -18.723 0.339 2.706 0.192 O17 YTC 26
YTC O19 O5 O 0 1 N N N -16.625 19.937 -17.839 -1.601 2.095 1.212 O19 YTC 27
YTC O27 O6 O 0 1 N N N -20.701 21.668 -25.209 7.682 -0.131 -0.244 O27 YTC 28
YTC O29 O7 O 0 1 N N N -19.052 20.191 -25.575 6.418 -1.772 -1.160 O29 YTC 29
YTC H1 H1 H 0 1 N N N -17.654 14.976 -18.155 -4.051 3.230 -0.684 H1 YTC 30
YTC H2 H2 H 0 1 N N N -16.920 16.255 -19.181 -4.266 2.682 -2.363 H2 YTC 31
YTC H3 H3 H 0 1 N N N -18.029 16.704 -17.841 -5.564 3.587 -1.549 H3 YTC 32
YTC H4 H4 H 0 1 N N N -18.016 18.301 -18.874 -2.738 1.721 -1.303 H4 YTC 33
YTC H5 H5 H 0 1 N N N -20.099 20.349 -21.992 -2.009 -2.300 -0.084 H5 YTC 34
YTC H6 H6 H 0 1 N N N -20.382 14.273 -22.983 -7.824 -0.668 1.333 H6 YTC 35
YTC H7 H7 H 0 1 N N N -19.822 15.876 -23.570 -6.244 -1.121 2.016 H7 YTC 36
YTC H8 H8 H 0 1 N N N -18.873 14.994 -22.325 -6.547 0.559 1.515 H8 YTC 37
YTC H9 H9 H 0 1 N N N -22.781 19.123 -23.995 -4.046 -4.795 0.990 H9 YTC 38
YTC H10 H10 H 0 1 N N N -22.780 19.284 -22.206 -3.036 -4.111 -0.305 H10 YTC 39
YTC H11 H11 H 0 1 N N N -21.579 20.188 -23.190 -2.820 -3.563 1.375 H11 YTC 40
YTC H12 H12 H 0 1 N N N -18.817 21.610 -20.502 -0.311 -1.032 -1.262 H12 YTC 41
YTC H13 H13 H 0 1 N N N -18.655 20.934 -18.845 -0.615 0.647 -1.771 H13 YTC 42
YTC H14 H14 H 0 1 N N N -16.523 20.021 -20.758 -0.276 -0.252 1.134 H14 YTC 43
YTC H15 H15 H 0 1 N N N -17.103 22.916 -20.267 1.711 0.312 -0.935 H15 YTC 44
YTC H16 H16 H 0 1 N N N -14.187 22.384 -20.350 2.071 2.278 1.307 H16 YTC 45
YTC H17 H17 H 0 1 N N N -15.120 23.388 -19.189 2.332 2.505 -0.449 H17 YTC 46
YTC H18 H18 H 0 1 N N N -15.390 21.287 -22.211 2.047 0.161 2.103 H18 YTC 47
YTC H19 H19 H 0 1 N N N -15.471 23.081 -22.210 1.901 -1.272 1.058 H19 YTC 48
YTC H20 H20 H 0 1 N N N -16.656 20.407 -23.948 3.665 -1.857 -0.503 H20 YTC 49
YTC H21 H21 H 0 1 N N N -20.287 23.669 -23.139 6.418 1.715 1.491 H21 YTC 50
YTC H22 H22 H 0 1 N N N -18.209 23.776 -21.807 4.016 1.573 2.008 H22 YTC 51
YTC H23 H23 H 0 1 N N N -19.860 21.364 -27.066 7.486 -0.391 -2.308 H23 YTC 52
YTC H24 H24 H 0 1 N N N -20.911 20.040 -26.456 8.479 -1.625 -1.468 H24 YTC 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YTC C28 O29 SING N N 1
YTC C28 O27 SING N N 2
YTC O29 C23 SING N N 3
YTC O27 C24 SING N N 4
YTC C23 C24 DOUB Y N 5
YTC C23 C22 SING Y N 6
YTC C24 C25 SING Y N 7
YTC C22 C21 DOUB Y N 8
YTC C25 C26 DOUB Y N 9
YTC C12 O11 SING N N 10
YTC O11 C07 SING N N 11
YTC C21 C26 SING Y N 12
YTC C21 C20 SING N N 13
YTC C10 O09 SING N N 14
YTC C20 C15 SING N N 15
YTC C07 C06 DOUB Y N 16
YTC C07 C08 SING Y N 17
YTC O09 C08 SING N N 18
YTC C06 C05 SING Y N 19
YTC C08 C03 DOUB Y N 20
YTC C15 C14 SING N N 21
YTC C15 C16 SING N N 22
YTC C05 C13 SING N N 23
YTC C05 C04 DOUB Y N 24
YTC C03 C04 SING Y N 25
YTC C03 O02 SING N N 26
YTC C14 C13 SING N N 27
YTC C14 C18 SING N N 28
YTC C16 O17 SING N N 29
YTC O02 C01 SING N N 30
YTC C18 O17 SING N N 31
YTC C18 O19 DOUB N N 32
YTC C01 H1 SING N N 33
YTC C01 H2 SING N N 34
YTC C01 H3 SING N N 35
YTC C04 H4 SING N N 36
YTC C06 H5 SING N N 37
YTC C10 H6 SING N N 38
YTC C10 H7 SING N N 39
YTC C10 H8 SING N N 40
YTC C12 H9 SING N N 41
YTC C12 H10 SING N N 42
YTC C12 H11 SING N N 43
YTC C13 H12 SING N N 44
YTC C13 H13 SING N N 45
YTC C14 H14 SING N N 46
YTC C15 H15 SING N N 47
YTC C16 H16 SING N N 48
YTC C16 H17 SING N N 49
YTC C20 H18 SING N N 50
YTC C20 H19 SING N N 51
YTC C22 H20 SING N N 52
YTC C25 H21 SING N N 53
YTC C26 H22 SING N N 54
YTC C28 H23 SING N N 55
YTC C28 H24 SING N N 56
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YTC InChI InChI 1.03 "InChI=1S/C22H24O7/c1-24-19-9-14(10-20(25-2)21(19)26-3)7-16-15(11-27-22(16)23)6-13-4-5-17-18(8-13)29-12-28-17/h4-5,8-10,15-16H,6-7,11-12H2,1-3H3/t15-,16+/m1/s1"
YTC InChIKey InChI 1.03 GMLDZDDTZKXJLU-CVEARBPZSA-N
YTC SMILES_CANONICAL CACTVS 3.385 "COc1cc(C[C@H]2[C@@H](COC2=O)Cc3ccc4OCOc4c3)cc(OC)c1OC"
YTC SMILES CACTVS 3.385 "COc1cc(C[CH]2[CH](COC2=O)Cc3ccc4OCOc4c3)cc(OC)c1OC"
YTC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)C[C@H]2[C@@H](COC2=O)Cc3ccc4c(c3)OCO4"
YTC SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)CC2C(COC2=O)Cc3ccc4c(c3)OCO4"
#
_pdbx_chem_comp_identifier.comp_id YTC
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{S},4~{S})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YTC "Create component" 2021-03-18 PDBJ
YTC "Initial release" 2021-12-15 RCSB
##