data_YTF # _chem_comp.id YTF _chem_comp.name "ethyl (4~{S})-4,7-bis(azanyl)-7-oxidanylidene-heptanoate" _chem_comp.type "L-peptide COOH carboxy terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-21 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.251 _chem_comp.one_letter_code Q _chem_comp.three_letter_code YTF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2B0F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YTF N N N 0 1 N N N Y Y N 302.708 -0.340 9.491 -1.008 1.723 -0.833 N YTF 1 YTF CA CA C 0 1 N N S Y N N 302.680 0.936 10.164 -0.979 0.626 0.143 CA YTF 2 YTF CB CB C 0 1 N N N N N N 303.479 1.977 9.371 -2.220 -0.251 -0.038 CB YTF 3 YTF CG CG C 0 1 N N N N N N 304.994 1.741 9.453 -3.471 0.561 0.303 CG YTF 4 YTF CD CD C 0 1 N N N N N N 305.815 2.730 8.638 -4.694 -0.303 0.125 CD YTF 5 YTF OE1 OE1 O 0 1 N N N N N N 305.313 3.353 7.708 -4.575 -1.454 -0.239 OE1 YTF 6 YTF NE2 NE2 N 0 1 N N N N N N 307.098 2.865 8.975 -5.918 0.204 0.370 NE2 YTF 7 YTF C CX5 C 0 1 N N N Y N Y 301.248 1.416 10.547 0.278 -0.219 -0.077 CX5 YTF 8 YTF CX6 CX6 C 0 1 N N N N N N 301.037 1.020 12.010 1.518 0.625 0.226 CX6 YTF 9 YTF CX7 CX7 C 0 1 N N N N N N 299.841 1.675 12.657 2.757 -0.207 0.009 CX7 YTF 10 YTF OX8 OX8 O 0 1 N N N N N N 299.133 2.444 12.011 2.657 -1.356 -0.349 OX8 YTF 11 YTF OX9 OX9 O 0 1 N N N N N N 299.622 1.398 13.861 3.970 0.330 0.216 OX9 YTF 12 YTF CJ1 CJ1 C 0 1 N N N N N N 298.460 1.980 14.686 5.118 -0.530 -0.012 CJ1 YTF 13 YTF CJ2 CJ2 C 0 1 N N N N N N 298.283 1.600 16.145 6.403 0.250 0.272 CJ2 YTF 14 YTF H2 H9 H 0 1 N Y N Y Y N 302.183 -1.008 10.019 -0.232 2.353 -0.693 H9 YTF 15 YTF H H H 0 1 N N N Y Y N 302.306 -0.245 8.580 -1.018 1.367 -1.778 H YTF 16 YTF HA HA H 0 1 N N N Y N N 303.215 0.807 11.117 -0.968 1.037 1.152 HA YTF 17 YTF HB2 HB2 H 0 1 N N N N N N 303.255 2.976 9.774 -2.277 -0.590 -1.072 HB2 YTF 18 YTF HB3 HB3 H 0 1 N N N N N N 303.171 1.930 8.316 -2.155 -1.114 0.625 HB3 YTF 19 YTF HG2 HG2 H 0 1 N N N N N N 305.207 0.727 9.085 -3.414 0.900 1.337 HG2 YTF 20 YTF HG3 HG3 H 0 1 N N N N N N 305.301 1.821 10.506 -3.536 1.423 -0.360 HG3 YTF 21 YTF HE22 HE22 H 0 0 N N N N N N 307.686 3.491 8.463 -6.013 1.125 0.660 HE22 YTF 22 YTF HE21 HE21 H 0 0 N N N N N N 307.472 2.340 9.740 -6.705 -0.351 0.255 HE21 YTF 23 YTF H11 H11 H 0 1 N Y N Y N Y 301.169 2.507 10.433 0.256 -1.083 0.587 H11 YTF 24 YTF H1 H1 H 0 1 N N N Y N Y 300.499 0.926 9.908 0.312 -0.557 -1.112 H1 YTF 25 YTF H31 H2 H 0 1 N N N Y N N 300.902 -0.071 12.057 1.541 1.489 -0.438 H2 YTF 26 YTF H3 H3 H 0 1 N N N N N N 301.936 1.303 12.578 1.484 0.963 1.261 H3 YTF 27 YTF H4 H4 H 0 1 N N N N N N 298.570 3.074 14.657 5.062 -1.393 0.651 H4 YTF 28 YTF H5 H5 H 0 1 N N N N N N 297.532 1.691 14.171 5.119 -0.867 -1.048 H5 YTF 29 YTF H7 H7 H 0 1 N N N N N N 297.403 2.117 16.555 6.402 0.588 1.309 H7 YTF 30 YTF H8 H8 H 0 1 N N N N N N 298.140 0.512 16.226 7.265 -0.395 0.101 H8 YTF 31 YTF H6 H6 H 0 1 N N N N N N 299.178 1.895 16.712 6.458 1.113 -0.391 H6 YTF 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YTF OE1 CD DOUB N N 1 YTF CD NE2 SING N N 2 YTF CD CG SING N N 3 YTF CB CG SING N N 4 YTF CB CA SING N N 5 YTF N CA SING N N 6 YTF CA C SING N N 7 YTF C CX6 SING N N 8 YTF CX6 CX7 SING N N 9 YTF OX8 CX7 DOUB N N 10 YTF CX7 OX9 SING N N 11 YTF OX9 CJ1 SING N N 12 YTF CJ1 CJ2 SING N N 13 YTF N H2 SING N N 14 YTF N H SING N N 15 YTF CA HA SING N N 16 YTF CB HB2 SING N N 17 YTF CB HB3 SING N N 18 YTF CG HG2 SING N N 19 YTF CG HG3 SING N N 20 YTF NE2 HE22 SING N N 21 YTF NE2 HE21 SING N N 22 YTF C H11 SING N N 23 YTF C H1 SING N N 24 YTF CX6 H31 SING N N 25 YTF CX6 H3 SING N N 26 YTF CJ1 H4 SING N N 27 YTF CJ1 H5 SING N N 28 YTF CJ2 H7 SING N N 29 YTF CJ2 H8 SING N N 30 YTF CJ2 H6 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YTF InChI InChI 1.06 "InChI=1S/C9H18N2O3/c1-2-14-9(13)6-4-7(10)3-5-8(11)12/h7H,2-6,10H2,1H3,(H2,11,12)/t7-/m0/s1" YTF InChIKey InChI 1.06 ZEVHIIRETBYBHR-ZETCQYMHSA-N YTF SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)CC[C@@H](N)CCC(N)=O" YTF SMILES CACTVS 3.385 "CCOC(=O)CC[CH](N)CCC(N)=O" YTF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](CCC(=O)N)N" YTF SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CCC(=O)N)N" # _pdbx_chem_comp_identifier.comp_id YTF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "ethyl (4~{S})-4,7-bis(azanyl)-7-oxidanylidene-heptanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YTF "Create component" 2023-02-21 RCSB YTF "Initial release" 2023-03-01 RCSB YTF "Modify backbone" 2023-11-03 PDBE #