data_YTM # _chem_comp.id YTM _chem_comp.name "5-{3-[3-chloro-5-(2-phenylethoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H21 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.944 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YTM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M8Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YTM C1 C1 C 0 1 N N N -13.804 -27.223 0.536 -1.535 1.503 -0.299 C1 YTM 1 YTM C2 C2 C 0 1 N N N -14.549 -27.942 -0.386 -1.101 0.156 -0.252 C2 YTM 2 YTM C3 C3 C 0 1 Y N N -15.894 -27.471 -0.917 0.314 -0.186 -0.526 C3 YTM 3 YTM C4 C4 C 0 1 Y N N -16.959 -28.378 -1.011 0.646 -0.952 -1.643 C4 YTM 4 YTM C5 C5 C 0 1 Y N N -18.187 -27.958 -1.507 1.966 -1.269 -1.895 C5 YTM 5 YTM C6 C6 C 0 1 Y N N -18.333 -26.652 -1.894 2.962 -0.828 -1.042 C6 YTM 6 YTM O1 O1 O 0 1 N N N -14.261 -26.011 1.021 -0.740 2.388 -0.572 O1 YTM 7 YTM O2 O2 O 0 1 N N N -17.502 -24.445 -2.152 3.622 0.366 0.906 O2 YTM 8 YTM C7 C7 C 0 1 Y N N -17.279 -25.762 -1.789 2.640 -0.065 0.072 C7 YTM 9 YTM C8 C8 C 0 1 N N N -18.596 -23.991 -1.393 4.963 -0.003 0.577 C8 YTM 10 YTM C9 C9 C 0 1 N N N -18.202 -22.741 -0.626 5.921 0.569 1.623 C9 YTM 11 YTM O3 O3 O 0 1 N N N -11.454 -31.926 1.151 -4.246 -2.536 -1.466 O3 YTM 12 YTM O4 O4 O 0 1 N N N -10.826 -34.275 -2.870 -7.024 -4.304 1.509 O4 YTM 13 YTM C10 C10 C 0 1 Y N N -18.000 -21.690 -1.688 7.335 0.179 1.276 C10 YTM 14 YTM C11 C11 C 0 1 Y N N -19.021 -20.781 -1.951 8.098 0.998 0.465 C11 YTM 15 YTM C12 C12 C 0 1 Y N N -18.827 -19.832 -2.945 9.395 0.641 0.146 C12 YTM 16 YTM C13 C13 C 0 1 Y N N -17.627 -19.815 -3.648 9.928 -0.536 0.637 C13 YTM 17 YTM C14 C14 C 0 1 Y N N -16.618 -20.733 -3.382 9.165 -1.356 1.448 C14 YTM 18 YTM C15 C15 C 0 1 Y N N -16.809 -21.685 -2.397 7.870 -0.995 1.772 C15 YTM 19 YTM C16 C16 C 0 1 Y N N -16.059 -26.156 -1.282 1.319 0.262 0.329 C16 YTM 20 YTM C17 C17 C 0 1 N N N -14.038 -29.137 -0.875 -2.016 -0.837 0.052 C17 YTM 21 YTM C18 C18 C 0 1 N N N -12.813 -29.606 -0.410 -3.354 -0.478 0.307 C18 YTM 22 YTM C19 C19 C 0 1 N N N -12.256 -30.916 -0.970 -4.356 -1.522 0.637 C19 YTM 23 YTM C20 C20 C 0 1 N N N -11.636 -31.941 -0.240 -4.742 -2.535 -0.354 C20 YTM 24 YTM C21 C21 C 0 1 N N N -12.344 -31.064 -2.349 -4.937 -1.568 1.868 C21 YTM 25 YTM C22 C22 C 0 1 N N N -11.305 -33.129 -2.225 -6.201 -3.457 1.221 C22 YTM 26 YTM C23 C23 C 0 1 N N N -12.116 -28.854 0.519 -3.728 0.844 0.250 C23 YTM 27 YTM C24 C24 C 0 1 Y N N -11.906 -26.955 1.961 -3.232 3.148 -0.106 C24 YTM 28 YTM C25 C25 C 0 1 Y N N -10.819 -26.146 1.703 -3.241 3.834 -1.317 C25 YTM 29 YTM C26 C26 C 0 1 Y N N -10.219 -25.495 2.778 -3.662 5.154 -1.323 C26 YTM 30 YTM C27 C27 C 0 1 Y N N -10.716 -25.682 4.071 -4.056 5.742 -0.135 C27 YTM 31 YTM C28 C28 C 0 1 Y N N -12.353 -27.111 3.266 -3.643 3.807 1.045 C28 YTM 32 YTM N1 N1 N 0 1 N N N -11.196 -33.022 -0.893 -5.657 -3.464 -0.009 N1 YTM 33 YTM N2 N2 N 0 1 N N N -11.873 -32.160 -2.951 -5.857 -2.542 2.142 N2 YTM 34 YTM N3 N3 N 0 1 N N N -12.619 -27.695 0.950 -2.821 1.811 -0.050 N3 YTM 35 YTM N4 N4 N 0 1 Y N N -11.782 -26.481 4.294 -4.036 5.064 0.996 N4 YTM 36 YTM CL1 CL1 CL 0 0 N N N -19.607 -29.032 -1.695 2.377 -2.224 -3.286 CL1 YTM 37 YTM H1 H1 H 0 1 N N N -16.825 -29.403 -0.698 -0.130 -1.298 -2.310 H1 YTM 38 YTM H2 H2 H 0 1 N N N -19.281 -26.314 -2.285 3.993 -1.082 -1.241 H2 YTM 39 YTM H4 H3 H 0 1 N N N -19.436 -23.759 -2.064 5.047 -1.090 0.562 H4 YTM 40 YTM H3 H4 H 0 1 N N N -18.900 -24.775 -0.684 5.218 0.394 -0.405 H3 YTM 41 YTM H6 H5 H 0 1 N N N -17.272 -22.908 -0.063 5.837 1.655 1.638 H6 YTM 42 YTM H5 H6 H 0 1 N N N -19.002 -22.443 0.068 5.666 0.171 2.606 H5 YTM 43 YTM H7 H7 H 0 1 N N N -19.945 -20.814 -1.393 7.682 1.918 0.082 H7 YTM 44 YTM H8 H8 H 0 1 N N N -19.601 -19.113 -3.171 9.991 1.281 -0.487 H8 YTM 45 YTM H9 H9 H 0 1 N N N -17.476 -19.072 -4.417 10.939 -0.818 0.384 H9 YTM 46 YTM H10 H10 H 0 1 N N N -15.693 -20.703 -3.939 9.581 -2.275 1.832 H10 YTM 47 YTM H11 H11 H 0 1 N N N -16.041 -22.414 -2.183 7.274 -1.635 2.405 H11 YTM 48 YTM H12 H12 H 0 1 N N N -15.251 -25.447 -1.174 1.068 0.857 1.196 H12 YTM 49 YTM H13 H13 H 0 1 N N N -14.589 -29.700 -1.613 -1.708 -1.872 0.093 H13 YTM 50 YTM H15 H14 H 0 1 N N N -12.799 -30.284 -2.941 -4.673 -0.842 2.622 H15 YTM 51 YTM H17 H15 H 0 1 N N N -11.166 -29.204 0.895 -4.754 1.118 0.445 H17 YTM 52 YTM H18 H16 H 0 1 N N N -10.445 -26.021 0.698 -2.927 3.350 -2.230 H18 YTM 53 YTM H19 H17 H 0 1 N N N -9.371 -24.847 2.613 -3.682 5.718 -2.244 H19 YTM 54 YTM H20 H18 H 0 1 N N N -10.242 -25.181 4.902 -4.385 6.771 -0.134 H20 YTM 55 YTM H21 H19 H 0 1 N N N -13.192 -27.765 3.455 -3.641 3.285 1.990 H21 YTM 56 YTM H14 H20 H 0 1 N N N -10.776 -33.768 -0.376 -5.927 -4.139 -0.651 H14 YTM 57 YTM H16 H21 H 0 1 N N N -11.945 -32.256 -3.944 -6.269 -2.573 3.020 H16 YTM 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YTM C13 C14 DOUB Y N 1 YTM C13 C12 SING Y N 2 YTM C14 C15 SING Y N 3 YTM N2 C21 SING N N 4 YTM N2 C22 SING N N 5 YTM C12 C11 DOUB Y N 6 YTM O4 C22 DOUB N N 7 YTM C15 C10 DOUB Y N 8 YTM C21 C19 DOUB N N 9 YTM C22 N1 SING N N 10 YTM O2 C7 SING N N 11 YTM O2 C8 SING N N 12 YTM C11 C10 SING Y N 13 YTM C6 C7 DOUB Y N 14 YTM C6 C5 SING Y N 15 YTM C7 C16 SING Y N 16 YTM CL1 C5 SING N N 17 YTM C10 C9 SING N N 18 YTM C5 C4 DOUB Y N 19 YTM C8 C9 SING N N 20 YTM C16 C3 DOUB Y N 21 YTM C4 C3 SING Y N 22 YTM C19 C18 SING N N 23 YTM C19 C20 SING N N 24 YTM C3 C2 SING N N 25 YTM N1 C20 SING N N 26 YTM C17 C18 SING N N 27 YTM C17 C2 DOUB N N 28 YTM C18 C23 DOUB N N 29 YTM C2 C1 SING N N 30 YTM C20 O3 DOUB N N 31 YTM C23 N3 SING N N 32 YTM C1 N3 SING N N 33 YTM C1 O1 DOUB N N 34 YTM N3 C24 SING N N 35 YTM C25 C24 DOUB Y N 36 YTM C25 C26 SING Y N 37 YTM C24 C28 SING Y N 38 YTM C26 C27 DOUB Y N 39 YTM C28 N4 DOUB Y N 40 YTM C27 N4 SING Y N 41 YTM C4 H1 SING N N 42 YTM C6 H2 SING N N 43 YTM C8 H4 SING N N 44 YTM C8 H3 SING N N 45 YTM C9 H6 SING N N 46 YTM C9 H5 SING N N 47 YTM C11 H7 SING N N 48 YTM C12 H8 SING N N 49 YTM C13 H9 SING N N 50 YTM C14 H10 SING N N 51 YTM C15 H11 SING N N 52 YTM C16 H12 SING N N 53 YTM C17 H13 SING N N 54 YTM C21 H15 SING N N 55 YTM C23 H17 SING N N 56 YTM C25 H18 SING N N 57 YTM C26 H19 SING N N 58 YTM C27 H20 SING N N 59 YTM C28 H21 SING N N 60 YTM N1 H14 SING N N 61 YTM N2 H16 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YTM SMILES ACDLabs 12.01 "O=C1NC=C(C2=CN(c3cnccc3)C(=O)C(=C2)c2cc(OCCc3ccccc3)cc(Cl)c2)C(=O)N1" YTM InChI InChI 1.03 "InChI=1S/C28H21ClN4O4/c29-21-11-19(12-23(14-21)37-10-8-18-5-2-1-3-6-18)24-13-20(25-16-31-28(36)32-26(25)34)17-33(27(24)35)22-7-4-9-30-15-22/h1-7,9,11-17H,8,10H2,(H2,31,32,34,36)" YTM InChIKey InChI 1.03 JVSFPWJWCIUVJO-UHFFFAOYSA-N YTM SMILES_CANONICAL CACTVS 3.385 "Clc1cc(OCCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YTM SMILES CACTVS 3.385 "Clc1cc(OCCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YTM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCOc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YTM SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCOc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YTM "SYSTEMATIC NAME" ACDLabs 12.01 "5-{3-[3-chloro-5-(2-phenylethoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione" YTM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-(2-phenylethoxy)phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YTM "Create component" 2021-03-31 RCSB YTM "Initial release" 2021-06-30 RCSB ##