data_YTN
#
_chem_comp.id YTN
_chem_comp.name "(3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H24 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-17
_chem_comp.pdbx_modified_date 2021-12-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 400.422
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YTN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7E38
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YTN C01 C1 C 0 1 Y N N -18.324 20.943 -24.827 5.848 0.091 -0.570 C01 YTN 1
YTN C02 C2 C 0 1 Y N N -19.697 21.668 -24.878 6.341 -0.757 0.419 C02 YTN 2
YTN C03 C3 C 0 1 Y N N -19.896 22.700 -23.715 5.484 -1.632 1.067 C03 YTN 3
YTN C04 C4 C 0 1 Y N N -18.983 22.934 -22.778 4.143 -1.661 0.733 C04 YTN 4
YTN C05 C5 C 0 1 Y N N -17.854 22.324 -22.756 3.653 -0.820 -0.249 C05 YTN 5
YTN C06 C6 C 0 1 Y N N -17.442 21.404 -23.622 4.503 0.056 -0.899 C06 YTN 6
YTN C07 C7 C 0 1 N N N -19.509 20.242 -26.433 7.923 0.741 -0.063 C07 YTN 7
YTN C08 C8 C 0 1 N N N -18.950 21.188 -19.597 -0.911 -0.198 1.166 C08 YTN 8
YTN C09 C9 C 0 1 N N R -17.443 21.580 -19.466 -0.081 0.120 -0.080 C09 YTN 9
YTN C10 C10 C 0 1 N N R -16.701 21.434 -20.731 1.424 0.136 0.266 C10 YTN 10
YTN C11 C11 C 0 1 N N N -16.896 22.682 -21.623 2.191 -0.857 -0.610 C11 YTN 11
YTN C12 C12 C 0 1 N N N -16.677 20.749 -18.452 -0.377 1.524 -0.568 C12 YTN 12
YTN C13 C13 C 0 1 N N N -15.247 21.339 -20.295 1.841 1.587 -0.060 C13 YTN 13
YTN C14 C14 C 0 1 Y N N -19.292 19.792 -20.132 -2.372 -0.248 0.797 C14 YTN 14
YTN C15 C15 C 0 1 Y N N -20.031 19.679 -21.300 -3.138 0.901 0.855 C15 YTN 15
YTN C16 C16 C 0 1 Y N N -20.378 18.433 -21.801 -4.482 0.859 0.517 C16 YTN 16
YTN C17 C17 C 0 1 Y N N -19.993 17.285 -21.126 -5.058 -0.342 0.118 C17 YTN 17
YTN C18 C18 C 0 1 Y N N -19.270 17.393 -19.947 -4.285 -1.495 0.061 C18 YTN 18
YTN C19 C19 C 0 1 Y N N -18.926 18.642 -19.449 -2.940 -1.443 0.396 C19 YTN 19
YTN C20 C20 C 0 1 N N N -17.522 16.189 -18.943 -3.990 -3.816 -0.364 C20 YTN 20
YTN C21 C21 C 0 1 N N N -19.589 15.533 -22.685 -6.710 -0.150 -1.583 C21 YTN 21
YTN C22 C22 C 0 1 N N N -22.405 18.860 -22.916 -4.576 3.187 0.993 C22 YTN 22
YTN O01 O1 O 0 1 N N N -18.334 20.057 -25.951 6.877 0.850 -1.047 O01 YTN 23
YTN O02 O2 O 0 1 N N N -20.353 21.122 -26.031 7.681 -0.534 0.556 O02 YTN 24
YTN O03 O3 O 0 1 N N N -15.299 20.659 -18.973 0.591 2.338 -0.109 O03 YTN 25
YTN O04 O4 O 0 1 N N N -17.088 20.275 -17.450 -1.318 1.854 -1.250 O04 YTN 26
YTN O05 O5 O 0 1 N N N -18.884 16.237 -19.259 -4.845 -2.671 -0.329 O05 YTN 27
YTN O06 O6 O 0 1 N N N -20.347 16.018 -21.615 -6.377 -0.387 -0.214 O06 YTN 28
YTN O07 O7 O 0 1 N N N -21.110 18.337 -22.992 -5.235 1.990 0.575 O07 YTN 29
YTN H1 H1 H 0 1 N N N -20.824 23.250 -23.673 5.864 -2.291 1.833 H1 YTN 30
YTN H2 H2 H 0 1 N N N -19.198 23.662 -22.010 3.477 -2.344 1.239 H2 YTN 31
YTN H3 H3 H 0 1 N N N -16.466 20.961 -23.489 4.117 0.713 -1.665 H3 YTN 32
YTN H4 H4 H 0 1 N N N -20.023 19.276 -26.323 8.902 0.754 -0.542 H4 YTN 33
YTN H5 H5 H 0 1 N N N -19.420 21.920 -20.271 -0.605 -1.162 1.570 H5 YTN 34
YTN H6 H6 H 0 1 N N N -19.397 21.272 -18.595 -0.753 0.578 1.915 H6 YTN 35
YTN H7 H7 H 0 1 N N N -17.399 22.633 -19.150 -0.285 -0.607 -0.866 H7 YTN 36
YTN H8 H8 H 0 1 N N N -17.005 20.526 -21.272 1.579 -0.081 1.323 H8 YTN 37
YTN H9 H9 H 0 1 N N N -15.928 22.994 -22.041 2.069 -0.586 -1.658 H9 YTN 38
YTN H10 H10 H 0 1 N N N -17.319 23.503 -21.025 1.801 -1.861 -0.446 H10 YTN 39
YTN H11 H11 H 0 1 N N N -14.663 20.746 -21.015 2.488 1.980 0.725 H11 YTN 40
YTN H12 H12 H 0 1 N N N -14.803 22.341 -20.200 2.346 1.628 -1.025 H12 YTN 41
YTN H13 H13 H 0 1 N N N -20.340 20.571 -21.825 -2.689 1.833 1.165 H13 YTN 42
YTN H14 H14 H 0 1 N N N -18.371 18.719 -18.526 -2.337 -2.337 0.347 H14 YTN 43
YTN H15 H15 H 0 1 N N N -17.302 15.254 -18.406 -3.171 -3.636 -1.061 H15 YTN 44
YTN H16 H16 H 0 1 N N N -16.929 16.228 -19.869 -3.586 -3.999 0.631 H16 YTN 45
YTN H17 H17 H 0 1 N N N -17.263 17.047 -18.305 -4.560 -4.686 -0.691 H17 YTN 46
YTN H18 H18 H 0 1 N N N -19.960 14.539 -22.977 -6.370 0.845 -1.873 H18 YTN 47
YTN H19 H19 H 0 1 N N N -19.676 16.222 -23.538 -6.224 -0.897 -2.211 H19 YTN 48
YTN H20 H20 H 0 1 N N N -18.534 15.457 -22.382 -7.791 -0.215 -1.712 H20 YTN 49
YTN H21 H21 H 0 1 N N N -22.905 18.744 -23.889 -4.176 3.049 1.998 H21 YTN 50
YTN H22 H22 H 0 1 N N N -22.974 18.320 -22.145 -3.761 3.412 0.305 H22 YTN 51
YTN H23 H23 H 0 1 N N N -22.355 19.927 -22.655 -5.288 4.011 0.996 H23 YTN 52
YTN H25 H25 H 0 1 N N N -19.354 20.455 -27.501 7.843 1.544 0.669 H25 YTN 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YTN C07 O02 SING N N 1
YTN C07 O01 SING N N 2
YTN O02 C02 SING N N 3
YTN O01 C01 SING N N 4
YTN C02 C01 DOUB Y N 5
YTN C02 C03 SING Y N 6
YTN C01 C06 SING Y N 7
YTN C03 C04 DOUB Y N 8
YTN C06 C05 DOUB Y N 9
YTN O07 C22 SING N N 10
YTN O07 C16 SING N N 11
YTN C04 C05 SING Y N 12
YTN C05 C11 SING N N 13
YTN C21 O06 SING N N 14
YTN C16 C15 DOUB Y N 15
YTN C16 C17 SING Y N 16
YTN C11 C10 SING N N 17
YTN O06 C17 SING N N 18
YTN C15 C14 SING Y N 19
YTN C17 C18 DOUB Y N 20
YTN C10 C13 SING N N 21
YTN C10 C09 SING N N 22
YTN C13 O03 SING N N 23
YTN C14 C08 SING N N 24
YTN C14 C19 DOUB Y N 25
YTN C18 C19 SING Y N 26
YTN C18 O05 SING N N 27
YTN C08 C09 SING N N 28
YTN C09 C12 SING N N 29
YTN O05 C20 SING N N 30
YTN O03 C12 SING N N 31
YTN C12 O04 DOUB N N 32
YTN C03 H1 SING N N 33
YTN C04 H2 SING N N 34
YTN C06 H3 SING N N 35
YTN C07 H4 SING N N 36
YTN C08 H5 SING N N 37
YTN C08 H6 SING N N 38
YTN C09 H7 SING N N 39
YTN C10 H8 SING N N 40
YTN C11 H9 SING N N 41
YTN C11 H10 SING N N 42
YTN C13 H11 SING N N 43
YTN C13 H12 SING N N 44
YTN C15 H13 SING N N 45
YTN C19 H14 SING N N 46
YTN C20 H15 SING N N 47
YTN C20 H16 SING N N 48
YTN C20 H17 SING N N 49
YTN C21 H18 SING N N 50
YTN C21 H19 SING N N 51
YTN C21 H20 SING N N 52
YTN C22 H21 SING N N 53
YTN C22 H22 SING N N 54
YTN C22 H23 SING N N 55
YTN C07 H25 SING N N 56
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YTN InChI InChI 1.03 "InChI=1S/C22H24O7/c1-24-19-9-14(10-20(25-2)21(19)26-3)7-16-15(11-27-22(16)23)6-13-4-5-17-18(8-13)29-12-28-17/h4-5,8-10,15-16H,6-7,11-12H2,1-3H3/t15-,16+/m0/s1"
YTN InChIKey InChI 1.03 GMLDZDDTZKXJLU-JKSUJKDBSA-N
YTN SMILES_CANONICAL CACTVS 3.385 "COc1cc(C[C@@H]2[C@H](COC2=O)Cc3ccc4OCOc4c3)cc(OC)c1OC"
YTN SMILES CACTVS 3.385 "COc1cc(C[CH]2[CH](COC2=O)Cc3ccc4OCOc4c3)cc(OC)c1OC"
YTN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)C[C@@H]2[C@H](COC2=O)Cc3ccc4c(c3)OCO4"
YTN SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)CC2C(COC2=O)Cc3ccc4c(c3)OCO4"
#
_pdbx_chem_comp_identifier.comp_id YTN
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YTN "Create component" 2021-02-17 PDBJ
YTN "Initial release" 2021-12-15 RCSB
##