data_YTO # _chem_comp.id YTO _chem_comp.name "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{R})-1-(1~{H}-1,2,3-triazol-5-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H21 F N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YTO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PG4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YTO N12 N1 N 0 1 Y N N N N N -22.734 -10.967 11.879 1.301 1.568 0.327 N12 YTO 1 YTO C13 C1 C 0 1 Y N N N N N -22.326 -10.714 10.625 -0.067 1.548 0.149 C13 YTO 2 YTO C24 C2 C 0 1 N N N N N N -20.376 -10.038 3.876 -8.691 -1.075 -0.127 C24 YTO 3 YTO C31 C3 C 0 1 Y N N N N N -21.502 -14.184 11.132 0.880 -1.968 0.570 C31 YTO 4 YTO C30 C4 C 0 1 Y N N N N N -21.891 -12.841 11.098 0.679 -0.593 0.427 C30 YTO 5 YTO C29 C5 C 0 1 Y N N N N N -20.317 -11.078 8.174 -2.580 -0.064 -1.150 C29 YTO 6 YTO C32 C6 C 0 1 Y N N N N N -21.742 -14.945 12.271 2.140 -2.453 0.778 C32 YTO 7 YTO C33 C7 C 0 1 Y N N N N N -22.365 -14.357 13.365 3.225 -1.589 0.841 C33 YTO 8 YTO C27 C8 C 0 1 Y N N N N N -19.699 -11.230 6.939 -3.882 -0.511 -1.278 C27 YTO 9 YTO O25 O1 O 0 1 N N N N N N -21.575 -12.394 3.500 -6.912 -0.018 1.507 O25 YTO 10 YTO C14 C9 C 0 1 N N N N N N -22.554 -9.347 9.979 -0.915 2.725 -0.060 C14 YTO 11 YTO C20 C10 C 0 1 Y N N N N N -20.629 -13.402 6.727 -3.848 -1.293 0.992 C20 YTO 12 YTO C19 C11 C 0 1 Y N N N N N -21.267 -13.272 7.951 -2.551 -0.845 1.134 C19 YTO 13 YTO C21 C12 C 0 1 Y N N N N N -19.847 -12.393 6.191 -4.514 -1.124 -0.208 C21 YTO 14 YTO C18 C13 C 0 1 Y N N N N N -21.117 -12.091 8.674 -1.905 -0.232 0.059 C18 YTO 15 YTO C17 C14 C 0 1 Y N N N N N -21.775 -11.880 10.075 -0.509 0.238 0.202 C17 YTO 16 YTO C11 C15 C 0 1 Y N N N N N -22.505 -12.254 12.207 1.774 0.288 0.496 C11 YTO 17 YTO C10 C16 C 0 1 Y N N N N N -22.745 -13.034 13.385 3.051 -0.230 0.703 C10 YTO 18 YTO C01 C17 C 0 1 N N N N N N -22.372 -12.194 15.761 4.384 1.228 2.201 C01 YTO 19 YTO C02 C18 C 0 1 N N R N N N -23.427 -12.763 14.801 4.239 0.695 0.774 C02 YTO 20 YTO C04 C19 C 0 1 N N N N N N -25.570 -12.478 14.000 6.425 0.792 -0.204 C04 YTO 21 YTO C05 C20 C 0 1 Y N N N N N -26.702 -13.062 14.859 7.621 -0.059 -0.544 C05 YTO 22 YTO C06 C21 C 0 1 Y N N N N N -27.976 -13.445 14.355 7.761 -1.388 -0.327 C06 YTO 23 YTO C22 C22 C 0 1 N N N N N N -19.168 -12.559 4.827 -5.934 -1.610 -0.354 C22 YTO 24 YTO F28 F1 F 0 1 N N N N N N -18.969 -10.174 6.473 -4.538 -0.350 -2.448 F28 YTO 25 YTO N07 N2 N 0 1 Y N N N N N -28.627 -13.940 15.417 8.973 -1.722 -0.784 N07 YTO 26 YTO N08 N3 N 0 1 Y N N N N N -27.862 -13.856 16.468 9.545 -0.669 -1.253 N08 YTO 27 YTO N09 N4 N 0 1 Y N N N N N -26.676 -13.317 16.163 8.768 0.349 -1.134 N09 YTO 28 YTO O03 O2 O 0 1 N N N N N N -24.602 -12.051 14.890 5.422 -0.020 0.410 O03 YTO 29 YTO O15 O3 O 0 1 N N N N N N -22.398 -8.286 10.635 -0.364 3.956 -0.092 O15 YTO 30 YTO O16 O4 O 0 1 N N N N N N -23.132 -9.313 8.832 -2.115 2.591 -0.207 O16 YTO 31 YTO O26 O5 O 0 1 N N N N N N -19.670 -11.911 2.142 -6.948 0.781 -0.811 O26 YTO 32 YTO S23 S1 S 0 1 N N N N N N -20.226 -11.816 3.519 -7.078 -0.284 0.121 S23 YTO 33 YTO H121 H1 H 0 0 N N N N N N -23.151 -10.292 12.487 1.850 2.368 0.327 H121 YTO 34 YTO H243 H2 H 0 0 N N N N N N -20.785 -9.900 4.888 -9.484 -0.372 0.128 H243 YTO 35 YTO H242 H3 H 0 0 N N N N N N -19.384 -9.567 3.814 -8.793 -1.375 -1.170 H242 YTO 36 YTO H241 H4 H 0 0 N N N N N N -21.050 -9.572 3.142 -8.767 -1.955 0.513 H241 YTO 37 YTO H311 H5 H 0 0 N N N N N N -21.017 -14.629 10.276 0.040 -2.646 0.522 H311 YTO 38 YTO H291 H6 H 0 0 N N N N N N -20.174 -10.171 8.743 -2.086 0.410 -1.985 H291 YTO 39 YTO H321 H7 H 0 0 N N N N N N -21.447 -15.983 12.305 2.293 -3.515 0.894 H321 YTO 40 YTO H331 H8 H 0 0 N N N N N N -22.559 -14.964 14.237 4.216 -1.987 1.006 H331 YTO 41 YTO H201 H9 H 0 0 N N N N N N -20.746 -14.322 6.173 -4.348 -1.768 1.823 H201 YTO 42 YTO H191 H10 H 0 0 N N N N N N -21.873 -14.077 8.339 -2.035 -0.970 2.075 H191 YTO 43 YTO H013 H11 H 0 0 N N N N N N -22.833 -12.003 16.742 5.244 1.897 2.253 H013 YTO 44 YTO H012 H12 H 0 0 N N N N N N -21.552 -12.918 15.876 3.482 1.773 2.479 H012 YTO 45 YTO H011 H13 H 0 0 N N N N N N -21.975 -11.253 15.353 4.531 0.394 2.888 H011 YTO 46 YTO H021 H14 H 0 0 N N N N N N -23.644 -13.769 15.191 4.092 1.529 0.088 H021 YTO 47 YTO H041 H15 H 0 0 N N N N N N -25.161 -13.249 13.330 6.726 1.581 0.486 H041 YTO 48 YTO H042 H16 H 0 0 N N N N N N -25.940 -11.632 13.402 6.025 1.238 -1.114 H042 YTO 49 YTO H061 H17 H 0 0 N N N N N N -28.338 -13.357 13.341 7.037 -2.049 0.126 H061 YTO 50 YTO H222 H18 H 0 0 N N N N N N -19.024 -13.629 4.617 -6.116 -1.893 -1.390 H222 YTO 51 YTO H221 H19 H 0 0 N N N N N N -18.191 -12.053 4.840 -6.090 -2.473 0.293 H221 YTO 52 YTO H091 H20 H 0 0 N N N N N N -25.919 -13.141 16.792 8.970 1.255 -1.417 H091 YTO 53 YTO H1 H21 H 0 1 N N N N N N -22.760 -7.555 10.147 -1.002 4.668 -0.235 H1 YTO 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YTO O26 S23 DOUB N N 1 YTO O25 S23 DOUB N N 2 YTO S23 C24 SING N N 3 YTO S23 C22 SING N N 4 YTO C22 C21 SING N N 5 YTO C21 C20 DOUB Y N 6 YTO C21 C27 SING Y N 7 YTO F28 C27 SING N N 8 YTO C20 C19 SING Y N 9 YTO C27 C29 DOUB Y N 10 YTO C19 C18 DOUB Y N 11 YTO C29 C18 SING Y N 12 YTO C18 C17 SING N N 13 YTO O16 C14 DOUB N N 14 YTO C14 C13 SING N N 15 YTO C14 O15 SING N N 16 YTO C17 C13 DOUB Y N 17 YTO C17 C30 SING Y N 18 YTO C13 N12 SING Y N 19 YTO C30 C31 DOUB Y N 20 YTO C30 C11 SING Y N 21 YTO C31 C32 SING Y N 22 YTO N12 C11 SING Y N 23 YTO C11 C10 DOUB Y N 24 YTO C32 C33 DOUB Y N 25 YTO C33 C10 SING Y N 26 YTO C10 C02 SING N N 27 YTO C04 C05 SING N N 28 YTO C04 O03 SING N N 29 YTO C06 C05 DOUB Y N 30 YTO C06 N07 SING Y N 31 YTO C02 O03 SING N N 32 YTO C02 C01 SING N N 33 YTO C05 N09 SING Y N 34 YTO N07 N08 DOUB Y N 35 YTO N09 N08 SING Y N 36 YTO N12 H121 SING N N 37 YTO C24 H243 SING N N 38 YTO C24 H242 SING N N 39 YTO C24 H241 SING N N 40 YTO C31 H311 SING N N 41 YTO C29 H291 SING N N 42 YTO C32 H321 SING N N 43 YTO C33 H331 SING N N 44 YTO C20 H201 SING N N 45 YTO C19 H191 SING N N 46 YTO C01 H013 SING N N 47 YTO C01 H012 SING N N 48 YTO C01 H011 SING N N 49 YTO C02 H021 SING N N 50 YTO C04 H041 SING N N 51 YTO C04 H042 SING N N 52 YTO C06 H061 SING N N 53 YTO C22 H222 SING N N 54 YTO C22 H221 SING N N 55 YTO N09 H091 SING N N 56 YTO O15 H1 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YTO InChI InChI 1.06 "InChI=1S/C22H21FN4O5S/c1-12(32-10-15-9-24-27-26-15)16-4-3-5-17-19(21(22(28)29)25-20(16)17)13-6-7-14(18(23)8-13)11-33(2,30)31/h3-9,12,25H,10-11H2,1-2H3,(H,28,29)(H,24,26,27)/t12-/m1/s1" YTO InChIKey InChI 1.06 GMSPDCZAPVZKON-GFCCVEGCSA-N YTO SMILES_CANONICAL CACTVS 3.385 "C[C@@H](OCc1[nH]nnc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YTO SMILES CACTVS 3.385 "C[CH](OCc1[nH]nnc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YTO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)OCc4cnn[nH]4" YTO SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)OCc4cnn[nH]4" # _pdbx_chem_comp_identifier.comp_id YTO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{R})-1-(1~{H}-1,2,3-triazol-5-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YTO "Create component" 2023-06-21 PDBE YTO "Initial release" 2024-07-10 RCSB #