data_YTV # _chem_comp.id YTV _chem_comp.name "5-{3-[3-chloro-5-(3-hydroxy-3-methylbutoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 Cl N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.927 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YTV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M8Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YTV C1 C1 C 0 1 N N N 8.080 -0.858 21.512 -1.074 1.492 0.331 C1 YTV 1 YTV C2 C2 C 0 1 N N N 8.166 -0.180 22.719 -0.679 0.135 0.246 C2 YTV 2 YTV C3 C3 C 0 1 Y N N 7.433 -0.649 23.995 0.728 -0.253 0.503 C3 YTV 3 YTV C4 C4 C 0 1 Y N N 6.729 0.290 24.740 1.042 -1.063 1.595 C4 YTV 4 YTV C5 C5 C 0 1 Y N N 6.053 -0.096 25.892 2.354 -1.423 1.831 C5 YTV 5 YTV C6 C6 C 0 1 Y N N 6.080 -1.412 26.319 3.359 -0.982 0.988 C6 YTV 6 YTV O1 O1 O 0 1 N N N 7.320 -2.007 21.407 -0.253 2.347 0.616 O1 YTV 7 YTV O2 O2 O 0 1 N N N 6.743 -3.676 26.076 4.045 0.253 -0.925 O2 YTV 8 YTV N3 N1 N 0 1 N N N 8.728 -0.414 20.427 -2.351 1.842 0.093 N3 YTV 9 YTV C7 C7 C 0 1 Y N N 6.770 -2.362 25.589 3.055 -0.177 -0.100 C7 YTV 10 YTV C8 C8 C 0 1 N N N 7.088 -4.684 25.180 5.376 -0.162 -0.613 C8 YTV 11 YTV C9 C9 C 0 1 N N N 6.942 -6.040 25.868 6.346 0.415 -1.645 C9 YTV 12 YTV O4 O3 O 0 1 N N N 9.964 3.367 19.378 -3.734 -2.629 1.323 O4 YTV 13 YTV O5 O4 O 0 1 N N N 13.046 5.908 21.848 -6.733 -4.112 -1.594 O5 YTV 14 YTV C10 C10 C 0 1 N N N 5.482 -6.348 26.232 7.771 -0.030 -1.311 C10 YTV 15 YTV C11 C11 C 0 1 N N N 4.503 -5.799 25.202 8.755 0.647 -2.267 C11 YTV 16 YTV C12 C12 C 0 1 N N N 5.144 -5.752 27.600 8.105 0.366 0.129 C12 YTV 17 YTV C13 C13 C 0 1 Y N N 7.440 -1.981 24.416 1.740 0.185 -0.349 C13 YTV 18 YTV C14 C14 C 0 1 N N N 8.964 0.962 22.767 -1.622 -0.824 -0.079 C14 YTV 19 YTV C15 C15 C 0 1 N N N 9.629 1.406 21.629 -2.951 -0.422 -0.316 C15 YTV 20 YTV C16 C16 C 0 1 N N N 10.531 2.650 21.665 -3.984 -1.429 -0.667 C16 YTV 21 YTV C17 C17 C 0 1 N N N 10.669 3.524 20.576 -4.308 -2.526 0.254 C17 YTV 22 YTV C18 C18 C 0 1 N N N 11.297 2.901 22.802 -4.658 -1.355 -1.848 C18 YTV 23 YTV C19 C19 C 0 1 N N N 12.200 4.795 21.793 -5.884 -3.296 -1.290 C19 YTV 24 YTV C20 C20 C 0 1 N N N 9.494 0.681 20.449 -3.285 0.910 -0.232 C20 YTV 25 YTV C21 C21 C 0 1 Y N N 8.571 -1.139 19.188 -2.724 3.188 0.182 C21 YTV 26 YTV C22 C22 C 0 1 Y N N 9.595 -1.867 18.602 -2.658 4.015 -0.938 C22 YTV 27 YTV C23 C23 C 0 1 Y N N 9.339 -2.524 17.406 -3.038 5.340 -0.800 C23 YTV 28 YTV C24 C24 C 0 1 Y N N 8.074 -2.435 16.825 -3.467 5.795 0.433 C24 YTV 29 YTV C25 C25 C 0 1 Y N N 7.340 -1.088 18.555 -3.171 3.718 1.385 C25 YTV 30 YTV N1 N2 N 0 1 N N N 11.489 4.577 20.678 -5.254 -3.417 -0.108 N1 YTV 31 YTV N2 N3 N 0 1 N N N 12.107 3.971 22.846 -5.604 -2.297 -2.143 N2 YTV 32 YTV N4 N4 N 0 1 Y N N 7.103 -1.721 17.405 -3.518 4.986 1.474 N4 YTV 33 YTV O3 O5 O 0 1 N N N 5.317 -7.737 26.295 7.872 -1.449 -1.450 O3 YTV 34 YTV CL1 CL1 CL 0 0 N N N 5.166 1.099 26.879 2.744 -2.431 3.190 CL1 YTV 35 YTV H1 H1 H 0 1 N N N 6.707 1.322 24.423 0.260 -1.408 2.254 H1 YTV 36 YTV H2 H2 H 0 1 N N N 5.562 -1.697 27.223 4.384 -1.266 1.178 H2 YTV 37 YTV H3 H3 H 0 1 N N N 8.130 -4.547 24.855 5.645 0.197 0.380 H3 YTV 38 YTV H4 H4 H 0 1 N N N 6.423 -4.642 24.305 5.431 -1.251 -0.632 H4 YTV 39 YTV H5 H5 H 0 1 N N N 7.312 -6.823 25.190 6.077 0.055 -2.638 H5 YTV 40 YTV H6 H6 H 0 1 N N N 7.544 -6.038 26.788 6.292 1.504 -1.626 H6 YTV 41 YTV H8 H7 H 0 1 N N N 3.475 -6.044 25.506 8.678 1.729 -2.161 H8 YTV 42 YTV H9 H8 H 0 1 N N N 4.615 -4.707 25.135 9.770 0.330 -2.029 H9 YTV 43 YTV H7 H9 H 0 1 N N N 4.713 -6.250 24.221 8.517 0.365 -3.293 H7 YTV 44 YTV H12 H10 H 0 1 N N N 5.845 -6.141 28.353 7.404 -0.116 0.810 H12 YTV 45 YTV H13 H11 H 0 1 N N N 5.228 -4.656 27.553 9.120 0.049 0.367 H13 YTV 46 YTV H11 H12 H 0 1 N N N 4.116 -6.030 27.877 8.028 1.449 0.235 H11 YTV 47 YTV H14 H13 H 0 1 N N N 7.965 -2.724 23.834 1.502 0.808 -1.198 H14 YTV 48 YTV H15 H14 H 0 1 N N N 9.067 1.506 23.694 -1.343 -1.865 -0.149 H15 YTV 49 YTV H17 H15 H 0 1 N N N 11.239 2.234 23.649 -4.447 -0.559 -2.546 H17 YTV 50 YTV H19 H16 H 0 1 N N N 10.006 1.002 19.554 -4.304 1.217 -0.418 H19 YTV 51 YTV H20 H17 H 0 1 N N N 10.569 -1.922 19.065 -2.319 3.633 -1.889 H20 YTV 52 YTV H21 H18 H 0 1 N N N 10.116 -3.102 16.927 -3.000 6.010 -1.646 H21 YTV 53 YTV H22 H19 H 0 1 N N N 7.876 -2.949 15.896 -3.760 6.828 0.547 H22 YTV 54 YTV H23 H20 H 0 1 N N N 6.544 -0.516 19.008 -3.230 3.085 2.258 H23 YTV 55 YTV H16 H21 H 0 1 N N N 11.573 5.211 19.910 -5.482 -4.148 0.488 H16 YTV 56 YTV H18 H22 H 0 1 N N N 12.644 4.154 23.669 -6.082 -2.243 -2.984 H18 YTV 57 YTV H10 H23 H 0 1 N N N 5.920 -8.099 26.933 8.750 -1.802 -1.253 H10 YTV 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YTV C24 N4 DOUB Y N 1 YTV C24 C23 SING Y N 2 YTV N4 C25 SING Y N 3 YTV C23 C22 DOUB Y N 4 YTV C25 C21 DOUB Y N 5 YTV C22 C21 SING Y N 6 YTV C21 N3 SING N N 7 YTV O4 C17 DOUB N N 8 YTV N3 C20 SING N N 9 YTV N3 C1 SING N N 10 YTV C20 C15 DOUB N N 11 YTV C17 N1 SING N N 12 YTV C17 C16 SING N N 13 YTV N1 C19 SING N N 14 YTV O1 C1 DOUB N N 15 YTV C1 C2 SING N N 16 YTV C15 C16 SING N N 17 YTV C15 C14 SING N N 18 YTV C16 C18 DOUB N N 19 YTV C19 O5 DOUB N N 20 YTV C19 N2 SING N N 21 YTV C2 C14 DOUB N N 22 YTV C2 C3 SING N N 23 YTV C18 N2 SING N N 24 YTV C3 C13 DOUB Y N 25 YTV C3 C4 SING Y N 26 YTV C13 C7 SING Y N 27 YTV C4 C5 DOUB Y N 28 YTV C8 C9 SING N N 29 YTV C8 O2 SING N N 30 YTV C11 C10 SING N N 31 YTV C7 O2 SING N N 32 YTV C7 C6 DOUB Y N 33 YTV C9 C10 SING N N 34 YTV C5 C6 SING Y N 35 YTV C5 CL1 SING N N 36 YTV C10 O3 SING N N 37 YTV C10 C12 SING N N 38 YTV C4 H1 SING N N 39 YTV C6 H2 SING N N 40 YTV C8 H3 SING N N 41 YTV C8 H4 SING N N 42 YTV C9 H5 SING N N 43 YTV C9 H6 SING N N 44 YTV C11 H8 SING N N 45 YTV C11 H9 SING N N 46 YTV C11 H7 SING N N 47 YTV C12 H12 SING N N 48 YTV C12 H13 SING N N 49 YTV C12 H11 SING N N 50 YTV C13 H14 SING N N 51 YTV C14 H15 SING N N 52 YTV C18 H17 SING N N 53 YTV C20 H19 SING N N 54 YTV C22 H20 SING N N 55 YTV C23 H21 SING N N 56 YTV C24 H22 SING N N 57 YTV C25 H23 SING N N 58 YTV N1 H16 SING N N 59 YTV N2 H18 SING N N 60 YTV O3 H10 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YTV SMILES ACDLabs 12.01 "CC(C)(O)CCOc1cc(cc(Cl)c1)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O" YTV InChI InChI 1.03 "InChI=1S/C25H23ClN4O5/c1-25(2,34)5-7-35-19-9-15(8-17(26)11-19)20-10-16(21-13-28-24(33)29-22(21)31)14-30(23(20)32)18-4-3-6-27-12-18/h3-4,6,8-14,34H,5,7H2,1-2H3,(H2,28,29,31,33)" YTV InChIKey InChI 1.03 JKRQOBZCXCNDAL-UHFFFAOYSA-N YTV SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)CCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YTV SMILES CACTVS 3.385 "CC(C)(O)CCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YTV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(CCOc1cc(cc(c1)Cl)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O)O" YTV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(CCOc1cc(cc(c1)Cl)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YTV "SYSTEMATIC NAME" ACDLabs 12.01 "5-{3-[3-chloro-5-(3-hydroxy-3-methylbutoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione" YTV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-(3-methyl-3-oxidanyl-butoxy)phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YTV "Create component" 2021-03-31 RCSB YTV "Initial release" 2021-06-30 RCSB ##