data_YU3 # _chem_comp.id YU3 _chem_comp.name "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(2-oxidanylidene-1~{H}-pyridin-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H21 F N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.497 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YU3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YU3 C13 C1 C 0 1 Y N N N N N -1.720 -10.786 10.300 -0.643 1.981 0.219 C13 YU3 1 YU3 C14 C2 C 0 1 N N N N N N -2.008 -9.457 9.677 -0.112 3.318 -0.059 C14 YU3 2 YU3 C17 C3 C 0 1 Y N N N N N -1.270 -11.961 9.711 0.100 0.815 0.263 C17 YU3 3 YU3 C10 C4 C 0 1 Y N N N N N -1.881 -12.933 13.104 -3.211 -0.464 1.006 C10 YU3 4 YU3 C11 C5 C 0 1 Y N N N N N -1.731 -12.260 11.884 -2.108 0.334 0.705 C11 YU3 5 YU3 C01 C6 C 0 1 N N N N N N -1.621 -12.459 15.571 -5.096 -0.068 2.568 C01 YU3 6 YU3 C02 C7 C 0 1 N N S N N N -2.369 -12.096 14.316 -4.576 0.157 1.146 C02 YU3 7 YU3 C03 C8 C 0 1 N N N N N N -3.803 -12.289 14.540 -5.521 -0.479 0.160 C03 YU3 8 YU3 C04 C9 C 0 1 N N N N N N -4.266 -13.031 15.683 -6.448 -1.387 0.580 C04 YU3 9 YU3 C05 C10 C 0 1 N N N N N N -5.684 -13.321 15.937 -7.316 -1.964 -0.357 C05 YU3 10 YU3 C06 C11 C 0 1 N N N N N N -6.672 -12.742 14.979 -7.227 -1.619 -1.663 C06 YU3 11 YU3 C08 C12 C 0 1 N N N N N N -4.730 -11.695 13.590 -5.460 -0.139 -1.203 C08 YU3 12 YU3 C18 C13 C 0 1 Y N N N N N -0.778 -12.144 8.301 1.556 0.683 0.037 C18 YU3 13 YU3 C19 C14 C 0 1 Y N N N N N -1.056 -13.280 7.577 2.459 1.279 0.919 C19 YU3 14 YU3 C20 C15 C 0 1 Y N N N N N -0.554 -13.402 6.282 3.816 1.153 0.703 C20 YU3 15 YU3 C21 C16 C 0 1 Y N N N N N 0.237 -12.411 5.715 4.284 0.437 -0.384 C21 YU3 16 YU3 C22 C17 C 0 1 N N N N N N 0.787 -12.530 4.294 5.767 0.304 -0.613 C22 YU3 17 YU3 C24 C18 C 0 1 N N N N N N -0.506 -10.107 3.373 8.148 -1.135 -0.164 C24 YU3 18 YU3 C27 C19 C 0 1 Y N N N N N 0.525 -11.295 6.469 3.394 -0.158 -1.264 C27 YU3 19 YU3 C29 C20 C 0 1 Y N N N N N 0.026 -11.147 7.755 2.033 -0.043 -1.056 C29 YU3 20 YU3 C30 C21 C 0 1 Y N N N N N -1.277 -12.900 10.749 -0.841 -0.266 0.579 C30 YU3 21 YU3 C31 C22 C 0 1 Y N N N N N -0.948 -14.253 10.820 -0.701 -1.645 0.755 C31 YU3 22 YU3 C32 C23 C 0 1 Y N N N N N -1.097 -14.929 12.010 -1.796 -2.406 1.051 C32 YU3 23 YU3 C33 C24 C 0 1 Y N N N N N -1.572 -14.285 13.155 -3.049 -1.820 1.176 C33 YU3 24 YU3 F28 F1 F 0 1 N N N N N N 1.296 -10.318 5.923 3.857 -0.855 -2.324 F28 YU3 25 YU3 N07 N1 N 0 1 N N N N N N -6.150 -11.949 13.840 -6.304 -0.715 -2.080 N07 YU3 26 YU3 N12 N2 N 0 1 Y N N N N N -1.983 -10.981 11.580 -1.963 1.683 0.485 N12 YU3 27 YU3 O09 O1 O 0 1 N N N N N N -4.301 -11.062 12.707 -4.635 0.672 -1.592 O09 YU3 28 YU3 O15 O2 O 0 1 N N N N N N -2.592 -9.514 8.517 1.075 3.467 -0.281 O15 YU3 29 YU3 O16 O3 O 0 1 N N N N N N -1.892 -8.410 10.351 -0.939 4.384 -0.069 O16 YU3 30 YU3 O25 O4 O 0 1 N N N N N N 0.239 -12.074 1.726 6.232 -0.983 1.641 O25 YU3 31 YU3 O26 O5 O 0 1 N N N N N N -1.673 -12.465 3.222 5.802 -2.321 -0.368 O26 YU3 32 YU3 S23 S1 S 0 1 N N N N N N -0.348 -11.865 3.040 6.380 -1.174 0.240 S23 YU3 33 YU3 H013 H1 H 0 0 N N N N N N -1.991 -11.849 16.408 -4.412 0.393 3.281 H013 YU3 34 YU3 H012 H2 H 0 0 N N N N N N -1.778 -13.524 15.796 -6.084 0.382 2.669 H012 YU3 35 YU3 H011 H3 H 0 0 N N N N N N -0.547 -12.270 15.425 -5.161 -1.138 2.765 H011 YU3 36 YU3 H021 H4 H 0 0 N N N N N N -2.181 -11.036 14.092 -4.511 1.227 0.949 H021 YU3 37 YU3 H041 H5 H 0 0 N N N N N N -3.534 -13.393 16.390 -6.513 -1.658 1.623 H041 YU3 38 YU3 H051 H6 H 0 0 N N N N N N -5.997 -13.924 16.777 -8.054 -2.685 -0.038 H051 YU3 39 YU3 H061 H7 H 0 0 N N N N N N -7.733 -12.896 15.111 -7.898 -2.067 -2.381 H061 YU3 40 YU3 H191 H8 H 0 0 N N N N N N -1.656 -14.068 8.007 2.096 1.838 1.768 H191 YU3 41 YU3 H201 H9 H 0 0 N N N N N N -0.785 -14.287 5.707 4.515 1.614 1.385 H201 YU3 42 YU3 H221 H10 H 0 0 N N N N N N 0.968 -13.593 4.075 5.964 0.215 -1.681 H221 YU3 43 YU3 H222 H11 H 0 0 N N N N N N 1.736 -11.977 4.237 6.276 1.186 -0.223 H222 YU3 44 YU3 H243 H12 H 0 0 N N N N N N -0.951 -9.960 4.368 8.646 -1.988 0.297 H243 YU3 45 YU3 H242 H13 H 0 0 N N N N N N 0.488 -9.637 3.343 8.275 -1.182 -1.246 H242 YU3 46 YU3 H241 H14 H 0 0 N N N N N N -1.152 -9.646 2.611 8.587 -0.211 0.213 H241 YU3 47 YU3 H291 H15 H 0 0 N N N N N N 0.260 -10.263 8.330 1.339 -0.507 -1.741 H291 YU3 48 YU3 H311 H16 H 0 0 N N N N N N -0.578 -14.768 9.946 0.270 -2.107 0.659 H311 YU3 49 YU3 H321 H17 H 0 0 N N N N N N -0.842 -15.977 12.059 -1.687 -3.472 1.186 H321 YU3 50 YU3 H331 H18 H 0 0 N N N N N N -1.698 -14.836 14.075 -3.905 -2.436 1.410 H331 YU3 51 YU3 H071 H19 H 0 0 N N N N N N -6.813 -11.561 13.199 -6.257 -0.476 -3.019 H071 YU3 52 YU3 H121 H20 H 0 0 N N N N N N -2.316 -10.286 12.218 -2.684 2.332 0.516 H121 YU3 53 YU3 H1 H21 H 0 1 N N N N N N -2.292 -7.686 9.884 -0.497 5.222 -0.262 H1 YU3 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YU3 O25 S23 DOUB N N 1 YU3 S23 O26 DOUB N N 2 YU3 S23 C24 SING N N 3 YU3 S23 C22 SING N N 4 YU3 C22 C21 SING N N 5 YU3 C21 C20 DOUB Y N 6 YU3 C21 C27 SING Y N 7 YU3 F28 C27 SING N N 8 YU3 C20 C19 SING Y N 9 YU3 C27 C29 DOUB Y N 10 YU3 C19 C18 DOUB Y N 11 YU3 C29 C18 SING Y N 12 YU3 C18 C17 SING N N 13 YU3 O15 C14 DOUB N N 14 YU3 C14 C13 SING N N 15 YU3 C14 O16 SING N N 16 YU3 C17 C13 DOUB Y N 17 YU3 C17 C30 SING Y N 18 YU3 C13 N12 SING Y N 19 YU3 C30 C31 DOUB Y N 20 YU3 C30 C11 SING Y N 21 YU3 C31 C32 SING Y N 22 YU3 N12 C11 SING Y N 23 YU3 C11 C10 DOUB Y N 24 YU3 C32 C33 DOUB Y N 25 YU3 O09 C08 DOUB N N 26 YU3 C10 C33 SING Y N 27 YU3 C10 C02 SING N N 28 YU3 C08 N07 SING N N 29 YU3 C08 C03 SING N N 30 YU3 N07 C06 SING N N 31 YU3 C02 C03 SING N N 32 YU3 C02 C01 SING N N 33 YU3 C03 C04 DOUB N N 34 YU3 C06 C05 DOUB N N 35 YU3 C04 C05 SING N N 36 YU3 C01 H013 SING N N 37 YU3 C01 H012 SING N N 38 YU3 C01 H011 SING N N 39 YU3 C02 H021 SING N N 40 YU3 C04 H041 SING N N 41 YU3 C05 H051 SING N N 42 YU3 C06 H061 SING N N 43 YU3 C19 H191 SING N N 44 YU3 C20 H201 SING N N 45 YU3 C22 H221 SING N N 46 YU3 C22 H222 SING N N 47 YU3 C24 H243 SING N N 48 YU3 C24 H242 SING N N 49 YU3 C24 H241 SING N N 50 YU3 C29 H291 SING N N 51 YU3 C31 H311 SING N N 52 YU3 C32 H321 SING N N 53 YU3 C33 H331 SING N N 54 YU3 N07 H071 SING N N 55 YU3 N12 H121 SING N N 56 YU3 O16 H1 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YU3 InChI InChI 1.06 "InChI=1S/C24H21FN2O5S/c1-13(17-7-4-10-26-23(17)28)16-5-3-6-18-20(22(24(29)30)27-21(16)18)14-8-9-15(19(25)11-14)12-33(2,31)32/h3-11,13,27H,12H2,1-2H3,(H,26,28)(H,29,30)/t13-/m0/s1" YU3 InChIKey InChI 1.06 KPFIGINTOHZVNI-ZDUSSCGKSA-N YU3 SMILES_CANONICAL CACTVS 3.385 "C[C@H](C1=CC=CNC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YU3 SMILES CACTVS 3.385 "C[CH](C1=CC=CNC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YU3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)C4=CC=CNC4=O" YU3 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)C4=CC=CNC4=O" # _pdbx_chem_comp_identifier.comp_id YU3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(2-oxidanylidene-1~{H}-pyridin-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YU3 "Create component" 2023-06-21 PDBE YU3 "Initial release" 2024-07-10 RCSB #