data_YU4 # _chem_comp.id YU4 _chem_comp.name "5-{3-[3-chloro-5-(3,3,3-trifluoropropoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H16 Cl F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.846 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YU4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M91 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YU4 C7 C1 C 0 1 N N N 9.539 -7.071 20.425 3.442 0.903 0.237 C7 YU4 1 YU4 C4 C2 C 0 1 Y N N 9.479 -10.293 17.400 3.232 5.320 0.845 C4 YU4 2 YU4 C5 C3 C 0 1 Y N N 8.215 -10.285 16.809 3.615 5.799 -0.395 C5 YU4 3 YU4 C6 C4 C 0 1 Y N N 7.395 -8.936 18.497 3.288 3.738 -1.372 C6 YU4 4 YU4 C1 C5 C 0 1 N N N 8.147 -8.609 21.512 1.235 1.493 -0.336 C1 YU4 5 YU4 C2 C6 C 0 1 Y N N 8.620 -8.899 19.148 2.887 3.186 -0.163 C2 YU4 6 YU4 C10 C7 C 0 1 N N N 10.770 -4.236 20.495 4.496 -2.505 -0.257 C10 YU4 7 YU4 C14 C8 C 0 1 N N N 8.262 -7.942 22.733 0.837 0.136 -0.263 C14 YU4 8 YU4 C15 C9 C 0 1 Y N N 7.496 -8.453 23.983 -0.567 -0.249 -0.537 C15 YU4 9 YU4 C16 C10 C 0 1 Y N N 7.374 -9.806 24.311 -1.588 0.185 0.306 C16 YU4 10 YU4 C11 C11 C 0 1 N N N 11.410 -4.936 22.711 4.754 -1.395 1.890 C11 YU4 11 YU4 C18 C12 C 0 1 N N N 6.697 -12.570 24.816 -5.225 -0.168 0.538 C18 YU4 12 YU4 C23 C13 C 0 1 Y N N 6.858 -7.531 24.799 -0.872 -1.042 -1.643 C23 YU4 13 YU4 C19 C14 C 0 1 N N N 5.441 -13.412 24.492 -6.205 0.399 1.567 C19 YU4 14 YU4 C20 C15 C 0 1 N N N 4.849 -13.967 25.784 -7.627 -0.042 1.215 C20 YU4 15 YU4 C21 C16 C 0 1 Y N N 6.033 -9.302 26.240 -3.194 -0.972 -1.054 C21 YU4 16 YU4 C12 C17 C 0 1 N N N 12.384 -3.081 21.734 6.018 -3.309 1.323 C12 YU4 17 YU4 C13 C18 C 0 1 N N N 9.053 -6.787 22.768 1.777 -0.827 0.060 C13 YU4 18 YU4 C17 C19 C 0 1 Y N N 6.649 -10.245 25.443 -2.899 -0.178 0.045 C17 YU4 19 YU4 C22 C20 C 0 1 Y N N 6.133 -7.958 25.910 -2.182 -1.399 -1.895 C22 YU4 20 YU4 C3 C21 C 0 1 Y N N 9.684 -9.584 18.578 2.863 3.991 0.973 C3 YU4 21 YU4 C8 C22 C 0 1 N N N 9.689 -6.345 21.600 3.102 -0.427 0.320 C8 YU4 22 YU4 C9 C23 C 0 1 N N N 10.614 -5.121 21.582 4.129 -1.437 0.681 C9 YU4 23 YU4 F1 F1 F 0 1 N N N 3.507 -13.746 25.798 -7.697 -1.439 1.224 F1 YU4 24 YU4 F2 F2 F 0 1 N N N 5.070 -15.313 25.886 -8.522 0.476 2.157 F2 YU4 25 YU4 F3 F3 F 0 1 N N N 5.428 -13.304 26.830 -7.961 0.433 -0.058 F3 YU4 26 YU4 N1 N1 N 0 1 N N N 8.770 -8.160 20.395 2.511 1.839 -0.087 N1 YU4 27 YU4 N2 N2 N 0 1 Y N N 7.204 -9.606 17.357 3.632 5.008 -1.450 N2 YU4 28 YU4 N3 N3 N 0 1 N N N 11.649 -3.228 20.619 5.435 -3.400 0.115 N3 YU4 29 YU4 N4 N4 N 0 1 N N N 12.273 -3.919 22.765 5.695 -2.339 2.194 N4 YU4 30 YU4 O1 O1 O 0 1 N N N 7.371 -9.760 21.436 0.417 2.352 -0.621 O1 YU4 31 YU4 O2 O2 O 0 1 N N N 10.031 -4.323 19.292 3.960 -2.585 -1.348 O2 YU4 32 YU4 O3 O3 O 0 1 N N N 13.288 -2.020 21.824 6.861 -4.127 1.636 O3 YU4 33 YU4 O4 O4 O 0 1 N N N 6.498 -11.598 25.820 -3.897 0.244 0.866 O4 YU4 34 YU4 CL1 CL1 CL 0 0 N N N 5.345 -6.756 26.956 -2.561 -2.386 -3.273 CL1 YU4 35 YU4 H5 H1 H 0 1 N N N 10.049 -6.751 19.529 4.458 1.208 0.436 H5 YU4 36 YU4 H2 H2 H 0 1 N N N 10.290 -10.844 16.947 3.226 5.974 1.704 H2 YU4 37 YU4 H3 H3 H 0 1 N N N 8.052 -10.836 15.895 3.904 6.834 -0.500 H3 YU4 38 YU4 H4 H4 H 0 1 N N N 6.562 -8.401 18.929 3.311 3.123 -2.260 H4 YU4 39 YU4 H10 H5 H 0 1 N N N 7.849 -10.541 23.679 -1.358 0.803 1.162 H10 YU4 40 YU4 H7 H6 H 0 1 N N N 11.328 -5.618 23.545 4.508 -0.623 2.604 H7 YU4 41 YU4 H12 H7 H 0 1 N N N 7.493 -13.252 25.149 -5.280 -1.257 0.545 H12 YU4 42 YU4 H11 H8 H 0 1 N N N 7.015 -12.056 23.897 -5.486 0.202 -0.454 H11 YU4 43 YU4 H16 H9 H 0 1 N N N 6.923 -6.477 24.572 -0.085 -1.377 -2.302 H16 YU4 44 YU4 H13 H10 H 0 1 N N N 4.695 -12.778 23.990 -5.944 0.028 2.559 H13 YU4 45 YU4 H14 H11 H 0 1 N N N 5.720 -14.245 23.830 -6.150 1.487 1.560 H14 YU4 46 YU4 H15 H12 H 0 1 N N N 5.477 -9.608 27.114 -4.217 -1.254 -1.255 H15 YU4 47 YU4 H9 H13 H 0 1 N N N 9.172 -6.239 23.691 1.496 -1.868 0.122 H9 YU4 48 YU4 H1 H14 H 0 1 N N N 10.658 -9.566 19.044 2.564 3.590 1.930 H1 YU4 49 YU4 H6 H15 H 0 1 N N N 11.758 -2.576 19.869 5.690 -4.113 -0.491 H6 YU4 50 YU4 H8 H16 H 0 1 N N N 12.837 -3.786 23.580 6.140 -2.307 3.056 H8 YU4 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YU4 C5 N2 DOUB Y N 1 YU4 C5 C4 SING Y N 2 YU4 N2 C6 SING Y N 3 YU4 C4 C3 DOUB Y N 4 YU4 C6 C2 DOUB Y N 5 YU4 C3 C2 SING Y N 6 YU4 C2 N1 SING N N 7 YU4 O2 C10 DOUB N N 8 YU4 N1 C7 SING N N 9 YU4 N1 C1 SING N N 10 YU4 C7 C8 DOUB N N 11 YU4 C10 N3 SING N N 12 YU4 C10 C9 SING N N 13 YU4 N3 C12 SING N N 14 YU4 O1 C1 DOUB N N 15 YU4 C1 C14 SING N N 16 YU4 C9 C8 SING N N 17 YU4 C9 C11 DOUB N N 18 YU4 C8 C13 SING N N 19 YU4 C12 O3 DOUB N N 20 YU4 C12 N4 SING N N 21 YU4 C11 N4 SING N N 22 YU4 C14 C13 DOUB N N 23 YU4 C14 C15 SING N N 24 YU4 C15 C16 DOUB Y N 25 YU4 C15 C23 SING Y N 26 YU4 C16 C17 SING Y N 27 YU4 C19 C18 SING N N 28 YU4 C19 C20 SING N N 29 YU4 C23 C22 DOUB Y N 30 YU4 C18 O4 SING N N 31 YU4 C17 O4 SING N N 32 YU4 C17 C21 DOUB Y N 33 YU4 C20 F1 SING N N 34 YU4 C20 F2 SING N N 35 YU4 C20 F3 SING N N 36 YU4 C22 C21 SING Y N 37 YU4 C22 CL1 SING N N 38 YU4 C7 H5 SING N N 39 YU4 C4 H2 SING N N 40 YU4 C5 H3 SING N N 41 YU4 C6 H4 SING N N 42 YU4 C16 H10 SING N N 43 YU4 C11 H7 SING N N 44 YU4 C18 H12 SING N N 45 YU4 C18 H11 SING N N 46 YU4 C23 H16 SING N N 47 YU4 C19 H13 SING N N 48 YU4 C19 H14 SING N N 49 YU4 C21 H15 SING N N 50 YU4 C13 H9 SING N N 51 YU4 C3 H1 SING N N 52 YU4 N3 H6 SING N N 53 YU4 N4 H8 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YU4 SMILES ACDLabs 12.01 "FC(F)(F)CCOc1cc(cc(Cl)c1)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O" YU4 InChI InChI 1.03 "InChI=1S/C23H16ClF3N4O4/c24-15-6-13(7-17(9-15)35-5-3-23(25,26)27)18-8-14(19-11-29-22(34)30-20(19)32)12-31(21(18)33)16-2-1-4-28-10-16/h1-2,4,6-12H,3,5H2,(H2,29,30,32,34)" YU4 InChIKey InChI 1.03 BHQBUUBHCKLKLD-UHFFFAOYSA-N YU4 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)CCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YU4 SMILES CACTVS 3.385 "FC(F)(F)CCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YU4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)N2C=C(C=C(C2=O)c3cc(cc(c3)Cl)OCCC(F)(F)F)C4=CNC(=O)NC4=O" YU4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)N2C=C(C=C(C2=O)c3cc(cc(c3)Cl)OCCC(F)(F)F)C4=CNC(=O)NC4=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YU4 "SYSTEMATIC NAME" ACDLabs 12.01 "5-{3-[3-chloro-5-(3,3,3-trifluoropropoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione" YU4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[3,3,3-tris(fluoranyl)propoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YU4 "Create component" 2021-03-31 RCSB YU4 "Initial release" 2021-06-30 RCSB ##