data_YUC # _chem_comp.id YUC _chem_comp.name "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YUC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YUC C10 C1 C 0 1 Y N N N N N -21.666 -11.936 9.790 0.842 0.347 -0.745 C10 YUC 1 YUC C11 C2 C 0 1 Y N N N N N -21.018 -12.263 8.452 2.247 -0.032 -0.480 C11 YUC 2 YUC C12 C3 C 0 1 Y N N N N N -21.584 -13.211 7.643 3.289 0.765 -0.967 C12 YUC 3 YUC C13 C4 C 0 1 Y N N N N N -21.009 -13.576 6.437 4.599 0.419 -0.725 C13 YUC 4 YUC C14 C5 C 0 1 Y N N N N N -19.778 -13.086 6.102 4.897 -0.726 0.005 C14 YUC 5 YUC C01 C6 C 0 1 N N N N N N -22.706 -12.470 15.648 -4.142 3.802 -0.781 C01 YUC 6 YUC C02 C7 C 0 1 N N S N N N -23.283 -12.070 14.287 -3.480 2.435 -0.962 C02 YUC 7 YUC C03 C8 C 0 1 Y N N N N N -22.680 -12.880 13.125 -2.069 2.487 -0.435 C03 YUC 8 YUC C04 C9 C 0 1 Y N N N N N -22.362 -12.219 11.912 -1.168 1.472 -0.750 C04 YUC 9 YUC C06 C10 C 0 1 Y N N N N N -22.127 -10.736 10.309 -0.076 -0.357 -1.505 C06 YUC 10 YUC C07 C11 C 0 1 N N N N N N -22.297 -9.418 9.678 0.183 -1.619 -2.198 C07 YUC 11 YUC C17 C12 C 0 1 N N N N N N -19.120 -11.033 3.395 6.755 1.009 1.954 C17 YUC 12 YUC C20 C13 C 0 1 Y N N N N N -19.146 -12.165 6.942 3.858 -1.533 0.500 C20 YUC 13 YUC C21 C14 C 0 1 N N N N N N -17.748 -11.668 6.564 4.160 -2.713 1.253 C21 YUC 14 YUC C23 C15 C 0 1 Y N N N N N -19.770 -11.750 8.129 2.532 -1.178 0.258 C23 YUC 15 YUC C24 C16 C 0 1 Y N N N N N -21.797 -12.898 10.834 0.145 1.539 -0.248 C24 YUC 16 YUC C25 C17 C 0 1 Y N N N N N -21.487 -14.261 10.943 0.530 2.614 0.557 C25 YUC 17 YUC C26 C18 C 0 1 Y N N N N N -21.832 -14.913 12.122 -0.370 3.598 0.853 C26 YUC 18 YUC C27 C19 C 0 1 Y N N N N N -22.396 -14.239 13.211 -1.667 3.537 0.360 C27 YUC 19 YUC C29 C20 C 0 1 N N N N N N -25.391 -13.385 14.774 -4.895 0.242 -0.816 C29 YUC 20 YUC C30 C21 C 0 1 N N N N N N -26.822 -13.161 14.501 -5.530 -0.456 0.391 C30 YUC 21 YUC C31 C22 C 0 1 N N N N N N -27.754 -12.783 15.644 -5.231 -1.948 0.525 C31 YUC 22 YUC C32 C23 C 0 1 N N N N N N -28.828 -13.709 15.057 -6.680 -2.106 1.021 C32 YUC 23 YUC C33 C24 C 0 1 N N N N N N -29.384 -14.751 16.040 -7.383 -3.349 0.470 C33 YUC 24 YUC C35 C25 C 0 1 N N N N N N -27.865 -14.175 13.994 -7.007 -0.818 0.244 C35 YUC 25 YUC C37 C26 C 0 1 N N N N N N -25.584 -11.526 13.438 -4.452 1.417 1.100 C37 YUC 26 YUC N05 N1 N 0 1 Y N N N N N -22.534 -10.933 11.569 -1.278 0.326 -1.502 N05 YUC 27 YUC N15 N2 N 0 1 N N N N N N -19.158 -13.480 4.824 6.220 -1.072 0.247 N15 YUC 28 YUC N22 N3 N 0 1 N N N N N N -16.688 -11.271 6.257 4.399 -3.649 1.851 N22 YUC 29 YUC N28 N4 N 0 1 N N N N N N -24.729 -12.258 14.270 -4.240 1.423 -0.224 N28 YUC 30 YUC N34 N5 N 0 1 N N N N N N -30.550 -15.359 15.432 -8.709 -3.476 1.089 N34 YUC 31 YUC O08 O1 O 0 1 N N N N N N -22.576 -9.420 8.431 1.282 -2.135 -2.132 O08 YUC 32 YUC O09 O2 O 0 1 N N N N N N -22.368 -8.347 10.353 -0.799 -2.211 -2.911 O09 YUC 33 YUC O18 O3 O 0 1 N N N N N N -19.265 -13.463 2.236 7.266 0.928 -0.663 O18 YUC 34 YUC O19 O4 O 0 1 N N N N N N -21.288 -12.771 3.192 8.542 -0.603 0.803 O19 YUC 35 YUC O36 O5 O 0 1 N N N N N N -26.879 -12.070 13.513 -5.184 0.371 1.528 O36 YUC 36 YUC O38 O6 O 0 1 N N N N N N -25.247 -10.600 12.756 -4.024 2.276 1.846 O38 YUC 37 YUC S16 S1 S 0 1 N N N N N N -19.829 -12.745 3.378 7.352 0.110 0.496 S16 YUC 38 YUC H121 H1 H 0 0 N N N N N N -22.503 -13.687 7.953 3.064 1.656 -1.536 H121 YUC 39 YUC H131 H2 H 0 0 N N N N N N -21.530 -14.243 5.766 5.398 1.038 -1.105 H131 YUC 40 YUC H013 H3 H 0 0 N N N N N N -23.171 -11.861 16.437 -4.159 4.060 0.278 H013 YUC 41 YUC H011 H4 H 0 0 N N N N N N -22.913 -13.534 15.836 -3.577 4.555 -1.330 H011 YUC 42 YUC H012 H5 H 0 0 N N N N N N -21.619 -12.302 15.649 -5.163 3.764 -1.162 H012 YUC 43 YUC H021 H6 H 0 0 N N N N N N -23.056 -11.007 14.117 -3.463 2.176 -2.020 H021 YUC 44 YUC H171 H7 H 0 0 N N N N N N -19.532 -10.474 4.248 5.770 1.427 1.745 H171 YUC 45 YUC H172 H8 H 0 0 N N N N N N -18.025 -11.090 3.488 6.688 0.325 2.800 H172 YUC 46 YUC H173 H9 H 0 0 N N N N N N -19.382 -10.519 2.459 7.449 1.815 2.193 H173 YUC 47 YUC H231 H10 H 0 0 N N N N N N -19.285 -11.040 8.783 1.729 -1.793 0.634 H231 YUC 48 YUC H251 H11 H 0 0 N N N N N N -20.996 -14.787 10.138 1.537 2.667 0.943 H251 YUC 49 YUC H261 H12 H 0 0 N N N N N N -21.659 -15.976 12.200 -0.072 4.428 1.475 H261 YUC 50 YUC H271 H13 H 0 0 N N N N N N -22.612 -14.777 14.123 -2.368 4.322 0.603 H271 YUC 51 YUC H292 H14 H 0 0 N N N N N N -25.041 -14.295 14.265 -4.160 -0.407 -1.292 H292 YUC 52 YUC H291 H15 H 0 0 N N N N N N -25.217 -13.480 15.856 -5.659 0.545 -1.531 H291 YUC 53 YUC H311 H16 H 0 0 N N N N N N -27.393 -13.084 16.639 -5.037 -2.443 -0.426 H311 YUC 54 YUC H312 H17 H 0 0 N N N N N N -28.036 -11.720 15.663 -4.481 -2.177 1.283 H312 YUC 55 YUC H321 H18 H 0 0 N N N N N N -29.646 -13.120 14.616 -6.785 -2.005 2.101 H321 YUC 56 YUC H331 H19 H 0 0 N N N N N N -28.623 -15.520 16.240 -7.494 -3.255 -0.610 H331 YUC 57 YUC H332 H20 H 0 0 N N N N N N -29.667 -14.261 16.983 -6.788 -4.234 0.699 H332 YUC 58 YUC H351 H21 H 0 0 N N N N N N -28.208 -13.991 12.965 -7.678 -0.145 0.777 H351 YUC 59 YUC H352 H22 H 0 0 N N N N N N -27.557 -15.226 14.096 -7.314 -0.995 -0.787 H352 YUC 60 YUC H051 H23 H 0 0 N N N N N N -22.911 -10.226 12.167 -2.081 0.038 -1.962 H051 YUC 61 YUC H151 H24 H 0 0 N N N N N N -19.250 -14.472 4.733 6.480 -2.006 0.269 H151 YUC 62 YUC H1 H25 H 0 1 N N N N N N -30.932 -16.043 16.053 -9.193 -4.290 0.742 H1 YUC 63 YUC H341 H26 H 0 0 N N N N N N -31.236 -14.655 15.249 -8.637 -3.500 2.096 H341 YUC 64 YUC H2 H28 H 0 1 N N N N N N -22.642 -7.634 9.788 -0.533 -3.040 -3.332 H2 YUC 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YUC O18 S16 DOUB N N 1 YUC O19 S16 DOUB N N 2 YUC S16 C17 SING N N 3 YUC S16 N15 SING N N 4 YUC N15 C14 SING N N 5 YUC C14 C13 DOUB Y N 6 YUC C14 C20 SING Y N 7 YUC N22 C21 TRIP N N 8 YUC C13 C12 SING Y N 9 YUC C21 C20 SING N N 10 YUC C20 C23 DOUB Y N 11 YUC C12 C11 DOUB Y N 12 YUC C23 C11 SING Y N 13 YUC O08 C07 DOUB N N 14 YUC C11 C10 SING N N 15 YUC C07 C06 SING N N 16 YUC C07 O09 SING N N 17 YUC C10 C06 DOUB Y N 18 YUC C10 C24 SING Y N 19 YUC C06 N05 SING Y N 20 YUC C24 C25 DOUB Y N 21 YUC C24 C04 SING Y N 22 YUC C25 C26 SING Y N 23 YUC N05 C04 SING Y N 24 YUC C04 C03 DOUB Y N 25 YUC C26 C27 DOUB Y N 26 YUC O38 C37 DOUB N N 27 YUC C03 C27 SING Y N 28 YUC C03 C02 SING N N 29 YUC C37 O36 SING N N 30 YUC C37 N28 SING N N 31 YUC O36 C30 SING N N 32 YUC C35 C30 SING N N 33 YUC C35 C32 SING N N 34 YUC N28 C02 SING N N 35 YUC N28 C29 SING N N 36 YUC C02 C01 SING N N 37 YUC C30 C29 SING N N 38 YUC C30 C31 SING N N 39 YUC C32 C31 SING N N 40 YUC C32 C33 SING N N 41 YUC N34 C33 SING N N 42 YUC C12 H121 SING N N 43 YUC C13 H131 SING N N 44 YUC C01 H013 SING N N 45 YUC C01 H011 SING N N 46 YUC C01 H012 SING N N 47 YUC C02 H021 SING N N 48 YUC C17 H171 SING N N 49 YUC C17 H172 SING N N 50 YUC C17 H173 SING N N 51 YUC C23 H231 SING N N 52 YUC C25 H251 SING N N 53 YUC C26 H261 SING N N 54 YUC C27 H271 SING N N 55 YUC C29 H292 SING N N 56 YUC C29 H291 SING N N 57 YUC C31 H311 SING N N 58 YUC C31 H312 SING N N 59 YUC C32 H321 SING N N 60 YUC C33 H331 SING N N 61 YUC C33 H332 SING N N 62 YUC C35 H351 SING N N 63 YUC C35 H352 SING N N 64 YUC N05 H051 SING N N 65 YUC N15 H151 SING N N 66 YUC N34 H1 SING N N 67 YUC N34 H341 SING N N 68 YUC O09 H2 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YUC InChI InChI 1.06 "InChI=1S/C26H27N5O6S/c1-14(31-13-26(37-25(31)34)9-15(10-26)11-27)18-4-3-5-19-21(23(24(32)33)29-22(18)19)16-6-7-20(17(8-16)12-28)30-38(2,35)36/h3-8,14-15,29-30H,9-11,13,27H2,1-2H3,(H,32,33)/t14-,15-,26-/m0/s1" YUC InChIKey InChI 1.06 MGTBOPZXDJTSFZ-USBFQFRLSA-N YUC SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@@]2(C[C@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N" YUC SMILES CACTVS 3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N" YUC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O" YUC SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O" # _pdbx_chem_comp_identifier.comp_id YUC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YUC "Create component" 2023-06-21 PDBE YUC "Initial release" 2024-07-10 RCSB #