data_YUH # _chem_comp.id YUH _chem_comp.name "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(6-oxidanylidene-1~{H}-pyridin-3-yl)-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 436.460 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YUH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YUH C10 C1 C 0 1 N N N N N N -20.153 -11.398 7.965 -3.984 -0.980 -1.457 C10 YUH 1 YUH C11 C2 C 0 1 N N N N N N -19.690 -11.707 6.686 -5.232 -1.323 -1.874 C11 YUH 2 YUH C15 C3 C 0 1 N N N N N N -21.545 -13.344 7.835 -4.944 -0.053 0.553 C15 YUH 3 YUH C17 C4 C 0 1 N N N N N N -22.285 -9.426 9.667 -1.918 -2.072 1.535 C17 YUH 4 YUH N20 N1 N 0 1 Y N N N N N -22.505 -10.990 11.626 -0.472 -0.012 1.281 N20 YUH 5 YUH C21 C5 C 0 1 Y N N N N N -22.260 -12.261 11.979 -0.540 1.218 0.669 C21 YUH 6 YUH C24 C6 C 0 1 N N N N N N -26.808 -12.987 14.515 4.052 -0.349 -0.207 C24 YUH 7 YUH C25 C7 C 0 1 N N N N N N -27.640 -12.723 15.720 3.865 -1.819 -0.582 C25 YUH 8 YUH C26 C8 C 0 1 N N N N N N -28.716 -13.603 15.133 5.366 -1.832 -0.926 C26 YUH 9 YUH O30 O1 O 0 1 N N N N N N -26.809 -11.925 13.585 3.775 0.617 -1.249 O30 YUH 10 YUH C31 C9 C 0 1 N N N N N N -25.453 -11.444 13.497 2.938 1.548 -0.769 C31 YUH 11 YUH O32 O2 O 0 1 N N N N N N -25.108 -10.492 12.880 2.536 2.484 -1.433 O32 YUH 12 YUH C01 C10 C 0 1 N N N N N N -22.561 -12.551 15.759 2.287 3.611 1.398 C01 YUH 13 YUH C02 C11 C 0 1 N N S N N N -23.110 -12.133 14.357 1.686 2.209 1.287 C02 YUH 14 YUH C03 C12 C 0 1 Y N N N N N -22.484 -12.923 13.208 0.348 2.289 0.598 C03 YUH 15 YUH C04 C13 C 0 1 Y N N N N N -22.149 -14.267 13.334 0.000 3.421 -0.104 C04 YUH 16 YUH C05 C14 C 0 1 Y N N N N N -21.584 -14.946 12.250 -1.229 3.509 -0.744 C05 YUH 17 YUH C06 C15 C 0 1 Y N N N N N -21.360 -14.286 11.038 -2.115 2.472 -0.688 C06 YUH 18 YUH C07 C16 C 0 1 Y N N N N N -21.704 -12.926 10.904 -1.784 1.313 0.019 C07 YUH 19 YUH C08 C17 C 0 1 Y N N N N N -21.611 -11.977 9.855 -2.485 0.048 0.272 C08 YUH 20 YUH C09 C18 C 0 1 N N N N N N -21.105 -12.230 8.553 -3.830 -0.330 -0.210 C09 YUH 21 YUH C12 C19 C 0 1 N N N N N N -20.183 -12.835 6.035 -6.341 -1.026 -1.061 C12 YUH 22 YUH C16 C20 C 0 1 Y N N N N N -22.136 -10.784 10.368 -1.633 -0.725 1.043 C16 YUH 23 YUH C23 C21 C 0 1 N N N N N N -25.368 -13.350 14.804 3.249 0.133 1.005 C23 YUH 24 YUH C27 C22 C 0 1 N N N N N N -29.217 -14.619 16.100 6.086 -3.105 -0.478 C27 YUH 25 YUH C29 C23 C 0 1 N N N N N N -27.719 -14.132 14.154 5.526 -0.656 0.055 C29 YUH 26 YUH N14 N2 N 0 1 N N N N N N -21.085 -13.613 6.618 -6.173 -0.407 0.122 N14 YUH 27 YUH N22 N3 N 0 1 N N N N N N -24.565 -12.313 14.254 2.585 1.352 0.510 N22 YUH 28 YUH N28 N4 N 0 1 N N N N N N -30.503 -15.149 15.648 7.475 -3.076 -0.955 N28 YUH 29 YUH O13 O3 O 0 1 N N N N N N -19.791 -13.107 4.943 -7.462 -1.336 -1.428 O13 YUH 30 YUH O18 O4 O 0 1 N N N N N N -22.624 -9.356 8.453 -2.981 -2.603 1.272 O18 YUH 31 YUH O19 O5 O 0 1 N N N N N N -22.078 -8.377 10.337 -1.004 -2.727 2.281 O19 YUH 32 YUH H101 H1 H 0 0 N N N N N N -19.781 -10.531 8.490 -3.121 -1.205 -2.067 H101 YUH 33 YUH H111 H2 H 0 0 N N N N N N -18.956 -11.077 6.205 -5.372 -1.819 -2.823 H111 YUH 34 YUH H151 H3 H 0 0 N N N N N N -22.277 -14.002 8.280 -4.832 0.442 1.506 H151 YUH 35 YUH H201 H4 H 0 0 N N N N N N -22.908 -10.298 12.225 0.282 -0.334 1.799 H201 YUH 36 YUH H251 H5 H 0 0 N N N N N N -27.209 -13.099 16.660 3.605 -2.456 0.264 H251 YUH 37 YUH H252 H6 H 0 0 N N N N N N -27.934 -11.671 15.847 3.216 -1.971 -1.444 H252 YUH 38 YUH H261 H7 H 0 0 N N N N N N -29.523 -13.027 14.656 5.577 -1.568 -1.962 H261 YUH 39 YUH H012 H8 H 0 0 N N N N N N -23.049 -11.948 16.539 1.618 4.249 1.977 H012 YUH 40 YUH H013 H9 H 0 0 N N N N N N -22.773 -13.616 15.933 3.255 3.553 1.897 H013 YUH 41 YUH H011 H10 H 0 0 N N N N N N -21.474 -12.383 15.792 2.417 4.031 0.401 H011 YUH 42 YUH H021 H11 H 0 0 N N N N N N -22.873 -11.069 14.209 1.556 1.789 2.285 H021 YUH 43 YUH H041 H12 H 0 0 N N N N N N -22.325 -14.784 14.266 0.691 4.250 -0.158 H041 YUH 44 YUH H051 H13 H 0 0 N N N N N N -21.319 -15.988 12.350 -1.486 4.405 -1.291 H051 YUH 45 YUH H061 H14 H 0 0 N N N N N N -20.924 -14.818 10.205 -3.070 2.547 -1.187 H061 YUH 46 YUH H232 H15 H 0 0 N N N N N N -25.118 -14.312 14.334 2.512 -0.613 1.300 H232 YUH 47 YUH H231 H16 H 0 0 N N N N N N -25.205 -13.420 15.890 3.913 0.366 1.838 H231 YUH 48 YUH H271 H17 H 0 0 N N N N N N -28.490 -15.441 16.174 6.076 -3.165 0.610 H271 YUH 49 YUH H272 H18 H 0 0 N N N N N N -29.343 -14.151 17.087 5.577 -3.975 -0.894 H272 YUH 50 YUH H292 H19 H 0 0 N N N N N N -28.062 -14.127 13.109 6.204 0.120 -0.299 H292 YUH 51 YUH H291 H20 H 0 0 N N N N N N -27.320 -15.126 14.404 5.733 -0.966 1.079 H291 YUH 52 YUH H141 H21 H 0 0 N N N N N N -21.426 -14.418 6.132 -6.947 -0.209 0.672 H141 YUH 53 YUH H281 H22 H 0 0 N N N N N N -30.832 -15.830 16.302 7.972 -3.907 -0.672 H281 YUH 54 YUH H282 H23 H 0 0 N N N N N N -31.166 -14.403 15.581 7.511 -2.956 -1.956 H282 YUH 55 YUH H2 H25 H 0 1 N N N N N N -22.218 -7.616 9.786 -1.282 -3.610 2.559 H2 YUH 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YUH O13 C12 DOUB N N 1 YUH C12 N14 SING N N 2 YUH C12 C11 SING N N 3 YUH N14 C15 SING N N 4 YUH C11 C10 DOUB N N 5 YUH C15 C09 DOUB N N 6 YUH C10 C09 SING N N 7 YUH O18 C17 DOUB N N 8 YUH C09 C08 SING N N 9 YUH C17 O19 SING N N 10 YUH C17 C16 SING N N 11 YUH C08 C16 DOUB Y N 12 YUH C08 C07 SING Y N 13 YUH C16 N20 SING Y N 14 YUH C07 C06 DOUB Y N 15 YUH C07 C21 SING Y N 16 YUH C06 C05 SING Y N 17 YUH N20 C21 SING Y N 18 YUH C21 C03 DOUB Y N 19 YUH C05 C04 DOUB Y N 20 YUH O32 C31 DOUB N N 21 YUH C03 C04 SING Y N 22 YUH C03 C02 SING N N 23 YUH C31 O30 SING N N 24 YUH C31 N22 SING N N 25 YUH O30 C24 SING N N 26 YUH C29 C24 SING N N 27 YUH C29 C26 SING N N 28 YUH N22 C02 SING N N 29 YUH N22 C23 SING N N 30 YUH C02 C01 SING N N 31 YUH C24 C23 SING N N 32 YUH C24 C25 SING N N 33 YUH C26 C25 SING N N 34 YUH C26 C27 SING N N 35 YUH N28 C27 SING N N 36 YUH C10 H101 SING N N 37 YUH C11 H111 SING N N 38 YUH C15 H151 SING N N 39 YUH N20 H201 SING N N 40 YUH C25 H251 SING N N 41 YUH C25 H252 SING N N 42 YUH C26 H261 SING N N 43 YUH C01 H012 SING N N 44 YUH C01 H013 SING N N 45 YUH C01 H011 SING N N 46 YUH C02 H021 SING N N 47 YUH C04 H041 SING N N 48 YUH C05 H051 SING N N 49 YUH C06 H061 SING N N 50 YUH C23 H232 SING N N 51 YUH C23 H231 SING N N 52 YUH C27 H271 SING N N 53 YUH C27 H272 SING N N 54 YUH C29 H292 SING N N 55 YUH C29 H291 SING N N 56 YUH N14 H141 SING N N 57 YUH N28 H281 SING N N 58 YUH N28 H282 SING N N 59 YUH O19 H2 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YUH InChI InChI 1.06 "InChI=1S/C23H24N4O5/c1-12(27-11-23(32-22(27)31)7-13(8-23)9-24)15-3-2-4-16-18(14-5-6-17(28)25-10-14)20(21(29)30)26-19(15)16/h2-6,10,12-13,26H,7-9,11,24H2,1H3,(H,25,28)(H,29,30)/t12-,13-,23-/m0/s1" YUH InChIKey InChI 1.06 LLBMGKUHSOANJG-XCMOZONUSA-N YUH SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@@]2(C[C@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4C5=CNC(=O)C=C5" YUH SMILES CACTVS 3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4C5=CNC(=O)C=C5" YUH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2C3=CNC(=O)C=C3)C(=O)O)N4CC5(CC(C5)CN)OC4=O" YUH SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2C3=CNC(=O)C=C3)C(=O)O)N4CC5(CC(C5)CN)OC4=O" # _pdbx_chem_comp_identifier.comp_id YUH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(6-oxidanylidene-1~{H}-pyridin-3-yl)-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YUH "Create component" 2023-06-21 PDBE YUH "Initial release" 2024-07-10 RCSB #