data_YUO # _chem_comp.id YUO _chem_comp.name "(5M)-5-(2-chloro-4-methylphenyl)-1-{3-[(methanesulfonyl)amino]propyl}-1H-benzimidazole-7-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 Cl N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-21 _chem_comp.pdbx_modified_date 2024-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.898 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YUO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FUL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YUO C10 C1 C 0 1 Y N N N N N 10.717 -16.154 -15.973 2.489 1.254 0.700 C10 YUO 1 YUO C11 C2 C 0 1 Y N N N N N 11.534 -15.251 -16.652 1.227 1.841 0.591 C11 YUO 2 YUO C13 C3 C 0 1 Y N N N N N 13.157 -14.177 -17.529 -0.540 3.103 0.655 C13 YUO 3 YUO C15 C4 C 0 1 N N N N N N 12.051 -12.213 -18.645 -2.229 1.693 -0.577 C15 YUO 4 YUO C16 C5 C 0 1 N N N N N N 11.236 -12.300 -19.918 -2.963 0.701 0.328 C16 YUO 5 YUO C17 C6 C 0 1 N N N N N N 12.008 -12.739 -21.134 -4.345 0.404 -0.257 C17 YUO 6 YUO C20 C7 C 0 1 N N N N N N 14.378 -10.955 -21.641 -6.872 -1.491 -1.211 C20 YUO 7 YUO C23 C8 C 0 1 Y N N N N N 10.974 -14.140 -17.297 0.196 1.156 -0.074 C23 YUO 8 YUO C24 C9 C 0 1 Y N N N N N 9.577 -13.963 -17.246 0.437 -0.112 -0.624 C24 YUO 9 YUO C25 C10 C 0 1 N N N N N N 8.780 -12.863 -17.856 -0.642 -0.834 -1.322 C25 YUO 10 YUO C28 C11 C 0 1 Y N N N N N 8.782 -14.886 -16.563 1.701 -0.685 -0.507 C28 YUO 11 YUO C1 C12 C 0 1 N N N N N N 6.039 -19.824 -13.045 7.938 -2.401 0.611 C1 YUO 12 YUO C2 C13 C 0 1 Y N N N N N 6.892 -18.831 -13.786 6.574 -1.772 0.489 C2 YUO 13 YUO C3 C14 C 0 1 Y N N N N N 7.463 -19.163 -15.000 6.453 -0.473 0.032 C3 YUO 14 YUO C4 C15 C 0 1 Y N N N N N 8.237 -18.254 -15.689 5.205 0.108 -0.082 C4 YUO 15 YUO C6 C16 C 0 1 Y N N N N N 8.481 -16.970 -15.194 4.067 -0.618 0.266 C6 YUO 16 YUO C7 C17 C 0 1 Y N N N N N 7.911 -16.640 -13.964 4.195 -1.927 0.726 C7 YUO 17 YUO C8 C18 C 0 1 Y N N N N N 7.121 -17.556 -13.283 5.447 -2.499 0.830 C8 YUO 18 YUO C9 C19 C 0 1 Y N N N N N 9.337 -15.983 -15.911 2.723 0.001 0.147 C9 YUO 19 YUO N12 N1 N 0 1 Y N N N N N 12.916 -15.245 -16.807 0.709 3.025 1.011 N12 YUO 20 YUO N14 N2 N 0 1 Y N N N N N 12.045 -13.460 -17.869 -0.905 1.977 -0.017 N14 YUO 21 YUO N18 N3 N 0 1 N N N N N N 11.851 -11.765 -22.212 -5.049 -0.545 0.609 N18 YUO 22 YUO O21 O1 O 0 1 N N N N N N 12.956 -10.095 -23.620 -7.219 0.548 0.475 O21 YUO 23 YUO O22 O2 O 0 1 N N N N N N 12.248 -9.516 -21.336 -7.010 -1.719 1.444 O22 YUO 24 YUO O26 O3 O 0 1 N N N N N N 7.679 -13.079 -18.356 -1.233 -0.302 -2.241 O26 YUO 25 YUO O27 O4 O 0 1 N N N N N N 9.309 -11.678 -17.772 -0.974 -2.083 -0.941 O27 YUO 26 YUO S19 S1 S 0 1 N N N N N N 12.809 -10.465 -22.247 -6.681 -0.767 0.442 S19 YUO 27 YUO CL5 CL1 CL 0 0 N N N N N N 8.921 -18.765 -17.200 5.054 1.740 -0.655 CL5 YUO 28 YUO H35 H1 H 0 1 N N N N N N 11.165 -17.006 -15.484 3.285 1.776 1.209 H35 YUO 29 YUO H36 H2 H 0 1 N N N N N N 14.153 -13.888 -17.830 -1.191 3.940 0.862 H36 YUO 30 YUO H38 H3 H 0 1 N N N N N N 11.637 -11.409 -18.019 -2.117 1.262 -1.572 H38 YUO 31 YUO H37 H4 H 0 1 N N N N N N 13.091 -11.972 -18.911 -2.802 2.618 -0.643 H37 YUO 32 YUO H39 H5 H 0 1 N N N N N N 10.420 -13.019 -19.753 -2.390 -0.224 0.394 H39 YUO 33 YUO H40 H6 H 0 1 N N N N N N 10.813 -11.305 -20.122 -3.075 1.132 1.323 H40 YUO 34 YUO H42 H7 H 0 1 N N N N N N 13.074 -12.826 -20.876 -4.918 1.329 -0.323 H42 YUO 35 YUO H41 H8 H 0 1 N N N N N N 11.631 -13.716 -21.470 -4.234 -0.026 -1.252 H41 YUO 36 YUO H46 H9 H 0 1 N N N N N N 15.061 -10.093 -21.650 -6.326 -2.433 -1.260 H46 YUO 37 YUO H44 H10 H 0 1 N N N N N N 14.273 -11.329 -20.612 -7.928 -1.672 -1.408 H44 YUO 38 YUO H45 H11 H 0 1 N N N N N N 14.786 -11.752 -22.281 -6.476 -0.802 -1.957 H45 YUO 39 YUO H48 H12 H 0 1 N N N N N N 7.711 -14.745 -16.540 1.890 -1.661 -0.928 H48 YUO 40 YUO H31 H13 H 0 1 N N N N N N 6.671 -20.418 -12.368 8.340 -2.206 1.605 H31 YUO 41 YUO H29 H14 H 0 1 N N N N N N 5.277 -19.288 -12.460 7.857 -3.477 0.456 H29 YUO 42 YUO H30 H15 H 0 1 N N N N N N 5.545 -20.492 -13.765 8.603 -1.975 -0.140 H30 YUO 43 YUO H32 H16 H 0 1 N N N N N N 7.301 -20.147 -15.414 7.335 0.088 -0.237 H32 YUO 44 YUO H33 H17 H 0 1 N N N N N N 8.086 -15.663 -13.538 3.317 -2.494 0.997 H33 YUO 45 YUO H34 H18 H 0 1 N N N N N N 6.675 -17.272 -12.342 5.548 -3.515 1.183 H34 YUO 46 YUO H43 H19 H 0 1 N N N N N N 11.993 -12.256 -23.072 -4.558 -1.044 1.281 H43 YUO 47 YUO H47 H20 H 0 1 N N N N N N 8.717 -11.039 -18.150 -1.688 -2.516 -1.429 H47 YUO 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YUO C1 C2 SING N N 1 YUO C2 C3 DOUB Y N 2 YUO C2 C8 SING Y N 3 YUO C3 C4 SING Y N 4 YUO C4 CL5 SING N N 5 YUO C4 C6 DOUB Y N 6 YUO C6 C7 SING Y N 7 YUO C6 C9 SING N N 8 YUO C7 C8 DOUB Y N 9 YUO C9 C10 DOUB Y N 10 YUO C9 C28 SING Y N 11 YUO C10 C11 SING Y N 12 YUO C11 N12 SING Y N 13 YUO C11 C23 DOUB Y N 14 YUO N12 C13 DOUB Y N 15 YUO C13 N14 SING Y N 16 YUO N14 C15 SING N N 17 YUO N14 C23 SING Y N 18 YUO C15 C16 SING N N 19 YUO C16 C17 SING N N 20 YUO C17 N18 SING N N 21 YUO N18 S19 SING N N 22 YUO S19 C20 SING N N 23 YUO S19 O21 DOUB N N 24 YUO S19 O22 DOUB N N 25 YUO C23 C24 SING Y N 26 YUO C24 C25 SING N N 27 YUO C24 C28 DOUB Y N 28 YUO C25 O26 DOUB N N 29 YUO C25 O27 SING N N 30 YUO C10 H35 SING N N 31 YUO C13 H36 SING N N 32 YUO C15 H38 SING N N 33 YUO C15 H37 SING N N 34 YUO C16 H39 SING N N 35 YUO C16 H40 SING N N 36 YUO C17 H42 SING N N 37 YUO C17 H41 SING N N 38 YUO C20 H46 SING N N 39 YUO C20 H44 SING N N 40 YUO C20 H45 SING N N 41 YUO C28 H48 SING N N 42 YUO C1 H31 SING N N 43 YUO C1 H29 SING N N 44 YUO C1 H30 SING N N 45 YUO C3 H32 SING N N 46 YUO C7 H33 SING N N 47 YUO C8 H34 SING N N 48 YUO N18 H43 SING N N 49 YUO O27 H47 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YUO SMILES ACDLabs 12.01 "Cc1ccc(c2cc3ncn(CCCNS(C)(=O)=O)c3c(c2)C(=O)O)c(Cl)c1" YUO InChI InChI 1.06 "InChI=1S/C19H20ClN3O4S/c1-12-4-5-14(16(20)8-12)13-9-15(19(24)25)18-17(10-13)21-11-23(18)7-3-6-22-28(2,26)27/h4-5,8-11,22H,3,6-7H2,1-2H3,(H,24,25)" YUO InChIKey InChI 1.06 CQJAMPJIDLKVNT-UHFFFAOYSA-N YUO SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(c(Cl)c1)c2cc3ncn(CCCN[S](C)(=O)=O)c3c(c2)C(O)=O" YUO SMILES CACTVS 3.385 "Cc1ccc(c(Cl)c1)c2cc3ncn(CCCN[S](C)(=O)=O)c3c(c2)C(O)=O" YUO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)ncn3CCCNS(=O)(=O)C)C(=O)O" YUO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)ncn3CCCNS(=O)(=O)C)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YUO "SYSTEMATIC NAME" ACDLabs 12.01 "(5M)-5-(2-chloro-4-methylphenyl)-1-{3-[(methanesulfonyl)amino]propyl}-1H-benzimidazole-7-carboxylic acid" YUO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-4-methyl-phenyl)-3-[3-(methylsulfonylamino)propyl]benzimidazole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YUO "Create component" 2023-02-21 RCSB YUO "Initial release" 2024-02-21 RCSB #