data_YUT # _chem_comp.id YUT _chem_comp.name "{difluoro[(R)-hydroxy{[(1s,2R,3S,4S,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H19 F2 O26 P7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-22 _chem_comp.pdbx_modified_date 2023-12-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 774.023 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YUT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G9E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YUT C5 C1 C 0 1 N N N N N N 0.897 20.842 12.407 -0.322 -0.049 0.388 C5 YUT 1 YUT C4 C2 C 0 1 N N S N N N -0.588 20.732 12.145 0.490 -1.277 -0.030 C4 YUT 2 YUT C2 C3 C 0 1 N N N N N N -0.077 19.892 9.844 2.603 0.029 0.239 C2 YUT 3 YUT C1 C4 C 0 1 N N S N N N 1.456 20.019 10.143 1.792 1.256 0.657 C1 YUT 4 YUT C3 C5 C 0 1 N N R N N N -0.869 19.661 11.121 1.858 -1.241 0.654 C3 YUT 5 YUT O55 O1 O 0 1 N N N N N N 3.526 22.018 17.550 -6.008 1.194 1.343 O55 YUT 6 YUT PB5 P1 P 0 1 N N N N N N 3.228 23.442 17.070 -5.953 -0.048 0.319 PB5 YUT 7 YUT O65 O2 O 0 1 N N N N N N 4.420 24.312 16.747 -6.046 -1.316 1.076 O65 YUT 8 YUT O75 O3 O 0 1 N N N N N N 1.951 24.101 17.575 -7.185 0.053 -0.713 O75 YUT 9 YUT C45 C6 C 0 1 N N N N N N 2.717 23.127 15.143 -4.382 -0.005 -0.604 C45 YUT 10 YUT F51 F1 F 0 1 N N N N N N 3.768 22.712 14.428 -4.334 -1.084 -1.494 F51 YUT 11 YUT F52 F2 F 0 1 N N N N N N 2.191 24.275 14.570 -4.293 1.194 -1.320 F52 YUT 12 YUT PA5 P2 P 0 1 N N N N N N 1.472 21.739 14.909 -2.987 -0.119 0.564 PA5 YUT 13 YUT O25 O4 O 0 1 N N N N N N 2.126 20.357 15.104 -3.037 1.021 1.506 O25 YUT 14 YUT O35 O5 O 0 1 N N N N N N 0.205 22.143 15.680 -3.089 -1.499 1.388 O35 YUT 15 YUT O15 O6 O 0 1 N N N N N N 1.149 21.939 13.286 -1.599 -0.082 -0.251 O15 YUT 16 YUT O14 O7 O 0 1 N N N N N N -1.058 20.203 13.377 -0.206 -2.463 0.358 O14 YUT 17 YUT PA4 P3 P 0 1 N N N N N N -2.372 20.767 14.224 -0.689 -3.580 -0.696 PA4 YUT 18 YUT O34 O8 O 0 1 N N N N N N -2.546 22.240 13.815 -1.319 -4.831 0.099 O34 YUT 19 YUT O44 O9 O 0 1 N N N N N N -2.044 20.480 15.670 -1.803 -2.951 -1.674 O44 YUT 20 YUT O24 O10 O 0 1 N N N N N N -3.566 19.868 13.754 0.469 -4.037 -1.496 O24 YUT 21 YUT O13 O11 O 0 1 N N N N N N -2.279 19.679 10.805 2.616 -2.388 0.263 O13 YUT 22 YUT PA3 P4 P 0 1 N N N N N N -3.177 18.329 10.958 3.157 -3.481 1.314 PA3 YUT 23 YUT O33 O12 O 0 1 N N N N N N -2.541 17.342 10.025 2.024 -4.000 2.113 O33 YUT 24 YUT O43 O13 O 0 1 N N N N N N -4.610 18.872 10.561 3.852 -4.695 0.516 O43 YUT 25 YUT O23 O14 O 0 1 N N N N N N -3.048 17.987 12.446 4.235 -2.796 2.294 O23 YUT 26 YUT O12 O15 O 0 1 N N N N N N -0.512 21.112 9.293 2.780 0.035 -1.179 O12 YUT 27 YUT PA2 P5 P 0 1 N N N N N N -0.908 21.286 7.706 4.227 0.074 -1.883 PA2 YUT 28 YUT O32 O16 O 0 1 N N N N N N -0.058 20.368 6.871 5.051 -1.048 -1.379 O32 YUT 29 YUT O42 O17 O 0 1 N N N N N N -0.602 22.707 7.545 4.053 -0.061 -3.477 O42 YUT 30 YUT O22 O18 O 0 1 N N N N N N -2.402 20.990 7.637 4.954 1.469 -1.538 O22 YUT 31 YUT O11 O19 O 0 1 N N N N N N 2.112 20.537 8.964 2.488 2.442 0.269 O11 YUT 32 YUT PA1 P6 P 0 1 N N N N N N 3.249 19.668 8.157 2.971 3.560 1.323 PA1 YUT 33 YUT O31 O20 O 0 1 N N N N N N 2.448 18.315 7.919 1.684 4.243 2.007 O31 YUT 34 YUT O41 O21 O 0 1 N N N N N N 3.709 20.386 6.898 3.807 2.926 2.366 O41 YUT 35 YUT O21 O22 O 0 1 N N N N N N 4.430 19.527 9.160 3.831 4.684 0.556 O21 YUT 36 YUT C6 C7 C 0 1 N N R N N N 1.751 21.053 11.183 0.424 1.221 -0.027 C6 YUT 37 YUT O16 O23 O 0 1 N N N N N N 3.121 20.920 11.653 -0.334 2.368 0.363 O16 YUT 38 YUT PA6 P7 P 0 1 N N N N N N 4.286 22.141 11.305 -0.875 3.461 -0.687 PA6 YUT 39 YUT O36 O24 O 0 1 N N N N N N 3.669 23.549 11.394 0.373 4.213 -1.371 O36 YUT 40 YUT O46 O25 O 0 1 N N N N N N 4.753 21.679 9.988 -1.677 2.786 -1.733 O46 YUT 41 YUT O26 O26 O 0 1 N N N N N N 5.291 21.875 12.430 -1.794 4.536 0.082 O26 YUT 42 YUT H1 H1 H 0 1 N N N N N N 1.225 19.911 12.893 -0.456 -0.054 1.470 H1 YUT 43 YUT H2 H2 H 0 1 N N N N N N -1.038 21.699 11.875 0.624 -1.272 -1.112 H2 YUT 44 YUT H3 H3 H 0 1 N N N N N N -0.241 19.056 9.148 3.578 0.054 0.726 H3 YUT 45 YUT H4 H4 H 0 1 N N N N N N 1.863 19.040 10.437 1.657 1.251 1.739 H4 YUT 46 YUT H5 H5 H 0 1 N N N N N N -0.592 18.682 11.540 1.723 -1.246 1.736 H5 YUT 47 YUT H6 H6 H 0 1 N N N N N N 4.466 21.882 17.576 -5.951 2.059 0.915 H6 YUT 48 YUT H7 H7 H 0 1 N N N N N N 2.078 25.041 17.625 -8.054 0.037 -0.290 H7 YUT 49 YUT H8 H8 H 0 1 N N N N N N -0.063 21.429 16.247 -3.062 -2.291 0.833 H8 YUT 50 YUT H9 H9 H 0 1 N N N N N N -3.363 22.343 13.341 -1.632 -5.544 -0.474 H9 YUT 51 YUT H10 H10 H 0 1 N N N N N N -2.631 19.810 16.001 -2.592 -2.630 -1.216 H10 YUT 52 YUT H11 H11 H 0 1 N N N N N N -4.884 18.476 9.742 4.201 -5.392 1.088 H11 YUT 53 YUT H12 H12 H 0 1 N N N N N N -3.259 18.753 12.967 5.006 -2.433 1.837 H12 YUT 54 YUT H13 H13 H 0 1 N N N N N N 0.105 22.810 6.919 4.887 -0.045 -3.967 H13 YUT 55 YUT H14 H14 H 0 1 N N N N N N -2.553 20.251 7.059 4.469 2.250 -1.839 H14 YUT 56 YUT H15 H15 H 0 1 N N N N N N 2.373 18.151 6.986 1.090 4.679 1.381 H15 YUT 57 YUT H16 H16 H 0 1 N N N N N N 4.623 20.374 9.544 4.156 5.391 1.130 H16 YUT 58 YUT H17 H17 H 0 1 N N N N N N 1.577 22.059 10.774 0.558 1.226 -1.109 H17 YUT 59 YUT H18 H18 H 0 1 N N N N N N 3.674 23.952 10.534 0.944 4.678 -0.743 H18 YUT 60 YUT H19 H19 H 0 1 N N N N N N 6.061 21.447 12.073 -2.155 5.226 -0.491 H19 YUT 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YUT O32 PA2 DOUB N N 1 YUT O41 PA1 DOUB N N 2 YUT O42 PA2 SING N N 3 YUT O22 PA2 SING N N 4 YUT PA2 O12 SING N N 5 YUT O31 PA1 SING N N 6 YUT PA1 O11 SING N N 7 YUT PA1 O21 SING N N 8 YUT O11 C1 SING N N 9 YUT O12 C2 SING N N 10 YUT C2 C1 SING N N 11 YUT C2 C3 SING N N 12 YUT O46 PA6 DOUB N N 13 YUT O33 PA3 DOUB N N 14 YUT C1 C6 SING N N 15 YUT O43 PA3 SING N N 16 YUT O13 PA3 SING N N 17 YUT O13 C3 SING N N 18 YUT PA3 O23 SING N N 19 YUT C3 C4 SING N N 20 YUT C6 O16 SING N N 21 YUT C6 C5 SING N N 22 YUT PA6 O36 SING N N 23 YUT PA6 O16 SING N N 24 YUT PA6 O26 SING N N 25 YUT C4 C5 SING N N 26 YUT C4 O14 SING N N 27 YUT C5 O15 SING N N 28 YUT O15 PA5 SING N N 29 YUT O14 PA4 SING N N 30 YUT O24 PA4 DOUB N N 31 YUT O34 PA4 SING N N 32 YUT PA4 O44 SING N N 33 YUT F51 C45 SING N N 34 YUT F52 C45 SING N N 35 YUT PA5 O25 DOUB N N 36 YUT PA5 C45 SING N N 37 YUT PA5 O35 SING N N 38 YUT C45 PB5 SING N N 39 YUT O65 PB5 DOUB N N 40 YUT PB5 O55 SING N N 41 YUT PB5 O75 SING N N 42 YUT C5 H1 SING N N 43 YUT C4 H2 SING N N 44 YUT C2 H3 SING N N 45 YUT C1 H4 SING N N 46 YUT C3 H5 SING N N 47 YUT O55 H6 SING N N 48 YUT O75 H7 SING N N 49 YUT O35 H8 SING N N 50 YUT O34 H9 SING N N 51 YUT O44 H10 SING N N 52 YUT O43 H11 SING N N 53 YUT O23 H12 SING N N 54 YUT O42 H13 SING N N 55 YUT O22 H14 SING N N 56 YUT O31 H15 SING N N 57 YUT O21 H16 SING N N 58 YUT C6 H17 SING N N 59 YUT O36 H18 SING N N 60 YUT O26 H19 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YUT SMILES ACDLabs 12.01 "OP(=O)(O)OC1C(OP(=O)(O)O)C(OP(=O)(O)O)C(OP(=O)(O)C(F)(F)P(=O)(O)O)C(OP(=O)(O)O)C1OP(=O)(O)O" YUT InChI InChI 1.06 "InChI=1S/C7H19F2O26P7/c8-7(9,36(10,11)12)37(13,14)30-1-2(31-38(15,16)17)4(33-40(21,22)23)6(35-42(27,28)29)5(34-41(24,25)26)3(1)32-39(18,19)20/h1-6H,(H,13,14)(H2,10,11,12)(H2,15,16,17)(H2,18,19,20)(H2,21,22,23)(H2,24,25,26)(H2,27,28,29)/t1-,2-,3+,4+,5-,6+" YUT InChIKey InChI 1.06 WXRZISRVPNTHSS-QWBQGLJISA-N YUT SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)O[C@@H]1[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(=O)C(F)(F)[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O" YUT SMILES CACTVS 3.385 "O[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)C(F)(F)[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" YUT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@H](C([C@H]([C@@H](C1OP(=O)(C(F)(F)P(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" YUT SMILES "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(C(F)(F)P(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YUT "SYSTEMATIC NAME" ACDLabs 12.01 "{difluoro[(R)-hydroxy{[(1s,2R,3S,4S,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid" YUT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[bis(fluoranyl)-[oxidanyl-[(2~{S},3~{R},5~{S},6~{R})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YUT "Create component" 2023-02-22 RCSB YUT "Initial release" 2024-01-03 RCSB #