data_YUU # _chem_comp.id YUU _chem_comp.name "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[1-(2-azanylethyl)pyrazol-4-yl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YUU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YUU C19 C1 C 0 1 Y N N N N N -22.373 -12.223 12.039 0.032 1.581 0.600 C19 YUU 1 YUU C17 C2 C 0 1 Y N N N N N -21.576 -14.260 11.005 -1.431 2.861 -0.855 C17 YUU 2 YUU C18 C3 C 0 1 Y N N N N N -21.853 -12.876 10.929 -1.220 1.765 -0.014 C18 YUU 3 YUU C16 C4 C 0 1 Y N N N N N -21.857 -14.921 12.203 -0.419 3.751 -1.077 C16 YUU 4 YUU C15 C5 C 0 1 Y N N N N N -22.389 -14.253 13.307 0.819 3.575 -0.473 C15 YUU 5 YUU C14 C6 C 0 1 Y N N N N N -22.655 -12.870 13.280 1.049 2.503 0.359 C14 YUU 6 YUU C10 C7 C 0 1 N N N N N N -27.827 -14.270 14.236 5.760 -1.169 0.031 C10 YUU 7 YUU C12 C8 C 0 1 N N N N N N -25.500 -11.461 13.541 3.445 1.248 -0.986 C12 YUU 8 YUU C21 C9 C 0 1 Y N N N N N -22.220 -10.727 10.446 -1.291 -0.127 1.266 C21 YUU 9 YUU C22 C10 C 0 1 N N N N N N -22.421 -9.375 9.794 -1.728 -1.348 1.941 C22 YUU 10 YUU C01 C11 C 0 1 N N N N N N -22.717 -12.499 15.859 3.184 3.634 0.914 C01 YUU 11 YUU C02 C12 C 0 1 N N S N N N -23.170 -12.096 14.410 2.398 2.325 1.007 C02 YUU 12 YUU C04 C13 C 0 1 N N N N N N -25.421 -13.438 14.951 3.658 0.036 0.946 C04 YUU 13 YUU C05 C14 C 0 1 N N N N N N -26.876 -13.068 14.617 4.328 -0.699 -0.219 C05 YUU 14 YUU C06 C15 C 0 1 N N N N N N -27.599 -12.759 15.817 3.931 -2.165 -0.392 C06 YUU 15 YUU C07 C16 C 0 1 N N N N N N -28.735 -13.660 15.187 5.398 -2.425 -0.782 C07 YUU 16 YUU C08 C17 C 0 1 N N N N N N -29.386 -14.558 16.318 5.967 -3.719 -0.196 C08 YUU 17 YUU C25 C18 C 0 1 Y N N N N N -21.762 -11.914 9.880 -2.068 0.651 0.425 C25 YUU 18 YUU C26 C19 C 0 1 Y N N N N N -21.272 -12.163 8.483 -3.477 0.407 0.045 C26 YUU 19 YUU C27 C20 C 0 1 Y N N N N N -20.427 -11.347 7.702 -3.953 -0.659 -0.687 C27 YUU 20 YUU C29 C21 C 0 1 N N N N N N -19.587 -11.549 5.377 -6.195 -1.409 -1.512 C29 YUU 21 YUU C30 C22 C 0 1 N N N N N N -20.386 -10.501 4.657 -7.312 -1.849 -0.564 C30 YUU 22 YUU C33 C23 C 0 1 Y N N N N N -21.563 -13.262 7.719 -4.584 1.219 0.370 C33 YUU 23 YUU N03 N1 N 0 1 N N N N N N -24.702 -12.252 14.398 3.135 1.263 0.319 N03 YUU 24 YUU N09 N2 N 0 1 N N N N N N -30.639 -15.349 15.470 5.670 -4.838 -1.101 N09 YUU 25 YUU N20 N3 N 0 1 Y N N N N N -22.545 -10.915 11.703 -0.031 0.437 1.360 N20 YUU 26 YUU N28 N4 N 0 1 Y N N N N N -20.296 -11.987 6.569 -5.285 -0.502 -0.808 N28 YUU 27 YUU N31 N5 N 0 1 N N N N N N -19.758 -9.297 4.055 -8.224 -2.759 -1.271 N31 YUU 28 YUU N32 N6 N 0 1 Y N N N N N -20.959 -13.127 6.534 -5.653 0.672 -0.142 N32 YUU 29 YUU O11 O1 O 0 1 N N N N N N -26.814 -11.992 13.621 4.127 0.157 -1.368 O11 YUU 30 YUU O13 O2 O 0 1 N N N N N N -25.200 -10.540 12.854 3.137 2.139 -1.752 O13 YUU 31 YUU O23 O3 O 0 1 N N N N N N -22.368 -8.363 10.502 -2.863 -1.758 1.782 O23 YUU 32 YUU O24 O4 O 0 1 N N N N N N -22.812 -9.395 8.618 -0.873 -2.021 2.739 O24 YUU 33 YUU H171 H1 H 0 0 N N N N N N -21.159 -14.791 10.162 -2.391 3.004 -1.329 H171 YUU 34 YUU H161 H2 H 0 0 N N N N N N -21.657 -15.980 12.277 -0.583 4.597 -1.727 H161 YUU 35 YUU H151 H3 H 0 0 N N N N N N -22.602 -14.812 14.206 1.610 4.287 -0.658 H151 YUU 36 YUU H102 H4 H 0 0 N N N N N N -28.176 -14.283 13.193 6.515 -0.543 -0.444 H102 YUU 37 YUU H101 H5 H 0 0 N N N N N N -27.457 -15.269 14.511 5.976 -1.374 1.080 H101 YUU 38 YUU H011 H6 H 0 0 N N N N N N -23.187 -11.826 16.591 3.318 3.905 -0.133 H011 YUU 39 YUU H013 H7 H 0 0 N N N N N N -23.023 -13.535 16.064 2.636 4.425 1.427 H013 YUU 40 YUU H012 H8 H 0 0 N N N N N N -21.623 -12.418 15.937 4.160 3.506 1.383 H012 YUU 41 YUU H021 H9 H 0 0 N N N N N N -22.929 -11.033 14.263 2.265 2.055 2.055 H021 YUU 42 YUU H041 H10 H 0 0 N N N N N N -25.266 -13.537 16.036 2.845 -0.560 1.360 H041 YUU 43 YUU H042 H11 H 0 0 N N N N N N -25.114 -14.368 14.451 4.388 0.280 1.718 H042 YUU 44 YUU H061 H12 H 0 0 N N N N N N -27.154 -13.145 16.746 3.633 -2.650 0.538 H061 YUU 45 YUU H062 H13 H 0 0 N N N N N N -27.859 -11.698 15.948 3.226 -2.334 -1.205 H062 YUU 46 YUU H071 H14 H 0 0 N N N N N N -29.499 -13.036 14.701 5.589 -2.323 -1.850 H071 YUU 47 YUU H082 H15 H 0 0 N N N N N N -28.660 -15.279 16.722 7.046 -3.622 -0.080 H082 YUU 48 YUU H081 H16 H 0 0 N N N N N N -29.785 -13.942 17.137 5.512 -3.908 0.776 H081 YUU 49 YUU H271 H17 H 0 0 N N N N N N -19.985 -10.401 7.979 -3.365 -1.471 -1.090 H271 YUU 50 YUU H292 H18 H 0 0 N N N N N N -19.431 -12.410 4.710 -5.642 -2.285 -1.854 H292 YUU 51 YUU H291 H19 H 0 0 N N N N N N -18.613 -11.128 5.667 -6.628 -0.895 -2.371 H291 YUU 52 YUU H301 H20 H 0 0 N N N N N N -20.902 -11.020 3.836 -6.879 -2.364 0.294 H301 YUU 53 YUU H302 H21 H 0 0 N N N N N N -21.127 -10.130 5.380 -7.865 -0.974 -0.223 H302 YUU 54 YUU H331 H22 H 0 0 N N N N N N -22.177 -14.097 8.023 -4.552 2.134 0.944 H331 YUU 55 YUU H091 H23 H 0 0 N N N N N N -31.132 -15.957 16.093 6.036 -5.705 -0.736 H091 YUU 56 YUU H1 H24 H 0 1 N N N N N N -31.271 -14.669 15.098 4.679 -4.909 -1.276 H1 YUU 57 YUU H201 H26 H 0 0 N N N N N N -22.871 -10.202 12.324 0.700 0.080 1.890 H201 YUU 58 YUU H2 H27 H 0 1 N N N N N N -20.463 -8.732 3.627 -8.972 -3.063 -0.666 H2 YUU 59 YUU H311 H28 H 0 0 N N N N N N -19.296 -8.770 4.768 -8.589 -2.327 -2.107 H311 YUU 60 YUU H3 H30 H 0 1 N N N N N N -23.061 -8.518 8.352 -1.252 -2.815 3.140 H3 YUU 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YUU C19 C18 DOUB Y N 1 YUU C19 C14 SING Y N 2 YUU C19 N20 SING Y N 3 YUU C17 C18 SING Y N 4 YUU C17 C16 DOUB Y N 5 YUU C18 C25 SING Y N 6 YUU C16 C15 SING Y N 7 YUU C15 C14 DOUB Y N 8 YUU C14 C02 SING N N 9 YUU C10 C05 SING N N 10 YUU C10 C07 SING N N 11 YUU C12 N03 SING N N 12 YUU C12 O11 SING N N 13 YUU C12 O13 DOUB N N 14 YUU C21 C22 SING N N 15 YUU C21 C25 DOUB Y N 16 YUU C21 N20 SING Y N 17 YUU C22 O23 DOUB N N 18 YUU C22 O24 SING N N 19 YUU C01 C02 SING N N 20 YUU C02 N03 SING N N 21 YUU C04 C05 SING N N 22 YUU C04 N03 SING N N 23 YUU C05 C06 SING N N 24 YUU C05 O11 SING N N 25 YUU C06 C07 SING N N 26 YUU C07 C08 SING N N 27 YUU C25 C26 SING N N 28 YUU C26 C27 DOUB Y N 29 YUU C26 C33 SING Y N 30 YUU C27 N28 SING Y N 31 YUU C29 C30 SING N N 32 YUU C29 N28 SING N N 33 YUU C30 N31 SING N N 34 YUU C33 N32 DOUB Y N 35 YUU N28 N32 SING Y N 36 YUU C08 N09 SING N N 37 YUU C17 H171 SING N N 38 YUU C16 H161 SING N N 39 YUU C15 H151 SING N N 40 YUU C10 H102 SING N N 41 YUU C10 H101 SING N N 42 YUU C01 H011 SING N N 43 YUU C01 H013 SING N N 44 YUU C01 H012 SING N N 45 YUU C02 H021 SING N N 46 YUU C04 H041 SING N N 47 YUU C04 H042 SING N N 48 YUU C06 H061 SING N N 49 YUU C06 H062 SING N N 50 YUU C07 H071 SING N N 51 YUU C08 H082 SING N N 52 YUU C08 H081 SING N N 53 YUU C27 H271 SING N N 54 YUU C29 H292 SING N N 55 YUU C29 H291 SING N N 56 YUU C30 H301 SING N N 57 YUU C30 H302 SING N N 58 YUU C33 H331 SING N N 59 YUU N09 H091 SING N N 60 YUU N09 H1 SING N N 61 YUU N20 H201 SING N N 62 YUU N31 H2 SING N N 63 YUU N31 H311 SING N N 64 YUU O24 H3 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YUU InChI InChI 1.06 "InChI=1S/C23H28N6O4/c1-13(29-12-23(33-22(29)32)7-14(8-23)9-25)16-3-2-4-17-18(20(21(30)31)27-19(16)17)15-10-26-28(11-15)6-5-24/h2-4,10-11,13-14,27H,5-9,12,24-25H2,1H3,(H,30,31)/t13-,14-,23-/m0/s1" YUU InChIKey InChI 1.06 WNYMZZVVYNTADX-QIPPXTIRSA-N YUU SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@]2(C[C@@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(CCN)c5" YUU SMILES CACTVS 3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(CCN)c5" YUU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3cnn(c3)CCN)C(=O)O)N4CC5(CC(C5)CN)OC4=O" YUU SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3cnn(c3)CCN)C(=O)O)N4CC5(CC(C5)CN)OC4=O" # _pdbx_chem_comp_identifier.comp_id YUU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[1-(2-azanylethyl)pyrazol-4-yl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YUU "Create component" 2023-06-21 PDBE YUU "Initial release" 2024-07-10 RCSB #