data_YV1 # _chem_comp.id YV1 _chem_comp.name "(3,5-dichlorophenyl)methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 Cl2 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2022-04-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.366 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YV1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S9M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YV1 C02 C1 C 0 1 N N N -15.221 10.033 48.501 -0.566 3.612 -0.855 C02 YV1 1 YV1 C04 C2 C 0 1 N N N -13.175 10.035 46.913 1.104 3.204 0.969 C04 YV1 2 YV1 C05 C3 C 0 1 N N N -12.174 9.937 48.022 -0.054 3.350 1.962 C05 YV1 3 YV1 C06 C4 C 0 1 N N R -13.430 11.796 49.069 -2.299 2.860 0.885 C06 YV1 4 YV1 C07 C5 C 0 1 N N S -12.126 11.326 48.624 -1.126 2.311 1.800 C07 YV1 5 YV1 N09 N1 N 0 1 N N N -11.707 12.493 50.582 -2.177 0.472 0.741 N09 YV1 6 YV1 C10 C6 C 0 1 N N N -13.041 12.911 50.069 -3.172 1.549 0.972 C10 YV1 7 YV1 C13 C7 C 0 1 N N N -14.638 8.062 47.207 1.261 2.032 -1.178 C13 YV1 8 YV1 O14 O1 O 0 1 N N N -15.716 7.579 47.466 0.902 1.874 -2.328 O14 YV1 9 YV1 C16 C8 C 0 1 N N N -14.006 6.055 45.880 3.011 0.474 -1.629 C16 YV1 10 YV1 C17 C9 C 0 1 Y N N -13.036 5.608 44.764 4.052 -0.327 -0.889 C17 YV1 11 YV1 C18 C10 C 0 1 Y N N -12.571 4.267 44.687 3.702 -1.517 -0.278 C18 YV1 12 YV1 C19 C11 C 0 1 Y N N -11.704 3.898 43.649 4.657 -2.252 0.402 C19 YV1 13 YV1 C20 C12 C 0 1 Y N N -11.263 4.802 42.698 5.961 -1.796 0.471 C20 YV1 14 YV1 C21 C13 C 0 1 Y N N -11.783 6.092 42.796 6.310 -0.605 -0.141 C21 YV1 15 YV1 C22 C14 C 0 1 Y N N -12.667 6.509 43.789 5.356 0.126 -0.825 C22 YV1 16 YV1 C25 C15 C 0 1 N N N -11.073 13.137 51.659 -2.431 -0.733 0.194 C25 YV1 17 YV1 C26 C16 C 0 1 Y N N -9.740 12.740 52.269 -3.821 -1.125 -0.117 C26 YV1 18 YV1 C28 C17 C 0 1 Y N N -9.536 11.393 52.647 -4.071 -2.082 -1.110 C28 YV1 19 YV1 N01 N2 N 0 1 N N N -14.402 9.514 47.421 0.621 2.917 -0.388 N01 YV1 20 YV1 C03 C18 C 0 1 N N N -14.375 10.721 49.594 -1.806 2.811 -0.557 C03 YV1 21 YV1 C08 C19 C 0 1 N N N -11.186 11.372 49.825 -0.854 0.951 1.215 C08 YV1 22 YV1 O15 O2 O 0 1 N N N -13.746 7.372 46.351 2.299 1.324 -0.693 O15 YV1 23 YV1 CL23 CL1 CL 0 0 N N N -11.272 7.249 41.607 7.947 -0.033 -0.056 CL23 YV1 24 YV1 CL24 CL2 CL 0 0 N N N -11.014 2.311 43.528 4.218 -3.746 1.170 CL24 YV1 25 YV1 O27 O3 O 0 1 N N N -11.700 14.061 52.148 -1.516 -1.497 -0.044 O27 YV1 26 YV1 C29 C20 C 0 1 Y N N -8.361 10.982 53.280 -5.349 -2.453 -1.407 C29 YV1 27 YV1 C30 C21 C 0 1 Y N N -8.772 13.715 52.496 -4.875 -0.547 0.580 C30 YV1 28 YV1 C31 C22 C 0 1 Y N N -7.551 13.293 53.130 -6.187 -0.923 0.281 C31 YV1 29 YV1 C32 C23 C 0 1 Y N N -7.359 11.963 53.497 -6.419 -1.881 -0.724 C32 YV1 30 YV1 N33 N3 N 0 1 Y N N -6.146 11.845 54.044 -7.781 -2.040 -0.790 N33 YV1 31 YV1 N34 N4 N 0 1 Y N N -5.561 13.093 54.062 -8.335 -1.175 0.164 N34 YV1 32 YV1 N35 N5 N 0 1 Y N N -6.448 13.980 53.485 -7.392 -0.547 0.773 N35 YV1 33 YV1 H37 H1 H 0 1 N N N -15.930 10.766 48.088 -0.634 4.579 -0.357 H37 YV1 34 YV1 H36 H2 H 0 1 N N N -15.778 9.200 48.955 -0.489 3.767 -1.931 H36 YV1 35 YV1 H41 H3 H 0 1 N N N -12.841 9.443 46.048 1.678 4.130 0.953 H41 YV1 36 YV1 H40 H4 H 0 1 N N N -13.305 11.085 46.611 1.752 2.390 1.295 H40 YV1 37 YV1 H42 H5 H 0 1 N N N -12.498 9.201 48.772 0.345 3.283 2.974 H42 YV1 38 YV1 H43 H6 H 0 1 N N N -11.187 9.651 47.629 -0.502 4.335 1.833 H43 YV1 39 YV1 H11 H7 H 0 1 N N N -13.928 12.284 48.218 -2.770 3.788 1.207 H11 YV1 40 YV1 H12 H8 H 0 1 N N N -11.738 12.017 47.861 -1.560 2.141 2.786 H12 YV1 41 YV1 H47 H9 H 0 1 N N N -12.976 13.885 49.562 -3.623 1.451 1.959 H47 YV1 42 YV1 H46 H10 H 0 1 N N N -13.772 12.973 50.888 -3.936 1.541 0.195 H46 YV1 43 YV1 H48 H11 H 0 1 N N N -13.914 5.356 46.725 3.498 1.092 -2.384 H48 YV1 44 YV1 H49 H12 H 0 1 N N N -15.033 6.020 45.486 2.308 -0.204 -2.112 H49 YV1 45 YV1 H50 H13 H 0 1 N N N -12.883 3.539 45.421 2.684 -1.872 -0.332 H50 YV1 46 YV1 H51 H14 H 0 1 N N N -10.559 4.525 41.927 6.707 -2.369 1.002 H51 YV1 47 YV1 H52 H15 H 0 1 N N N -13.055 7.517 43.794 5.629 1.054 -1.306 H52 YV1 48 YV1 H53 H16 H 0 1 N N N -10.307 10.665 52.441 -3.245 -2.530 -1.644 H53 YV1 49 YV1 H38 H17 H 0 1 N N N -15.060 11.187 50.318 -2.607 3.172 -1.202 H38 YV1 50 YV1 H39 H18 H 0 1 N N N -13.774 9.951 50.101 -1.610 1.771 -0.814 H39 YV1 51 YV1 H44 H19 H 0 1 N N N -11.237 10.440 50.407 -0.157 1.029 0.381 H44 YV1 52 YV1 H45 H20 H 0 1 N N N -10.147 11.552 49.511 -0.460 0.281 1.979 H45 YV1 53 YV1 H54 H21 H 0 1 N N N -8.220 9.958 53.592 -5.531 -3.191 -2.174 H54 YV1 54 YV1 H55 H22 H 0 1 N N N -8.931 14.744 52.209 -4.681 0.187 1.348 H55 YV1 55 YV1 H56 H23 H 0 1 N N N -5.734 10.999 54.382 -8.266 -2.635 -1.384 H56 YV1 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YV1 N01 C02 SING N N 1 YV1 C02 C03 SING N N 2 YV1 N01 C04 SING N N 3 YV1 C04 C05 SING N N 4 YV1 C03 C06 SING N N 5 YV1 C05 C07 SING N N 6 YV1 C06 C07 SING N N 7 YV1 C07 C08 SING N N 8 YV1 C08 N09 SING N N 9 YV1 C06 C10 SING N N 10 YV1 N09 C10 SING N N 11 YV1 N01 C13 SING N N 12 YV1 C13 O14 DOUB N N 13 YV1 C13 O15 SING N N 14 YV1 O15 C16 SING N N 15 YV1 C16 C17 SING N N 16 YV1 C17 C18 DOUB Y N 17 YV1 C18 C19 SING Y N 18 YV1 C19 C20 DOUB Y N 19 YV1 C20 C21 SING Y N 20 YV1 C17 C22 SING Y N 21 YV1 C21 C22 DOUB Y N 22 YV1 C21 CL23 SING N N 23 YV1 C19 CL24 SING N N 24 YV1 N09 C25 SING N N 25 YV1 C25 C26 SING N N 26 YV1 C25 O27 DOUB N N 27 YV1 C26 C28 DOUB Y N 28 YV1 C28 C29 SING Y N 29 YV1 C26 C30 SING Y N 30 YV1 C30 C31 DOUB Y N 31 YV1 C29 C32 DOUB Y N 32 YV1 C31 C32 SING Y N 33 YV1 C32 N33 SING Y N 34 YV1 N33 N34 SING Y N 35 YV1 C31 N35 SING Y N 36 YV1 N34 N35 DOUB Y N 37 YV1 C02 H37 SING N N 38 YV1 C02 H36 SING N N 39 YV1 C04 H41 SING N N 40 YV1 C04 H40 SING N N 41 YV1 C05 H42 SING N N 42 YV1 C05 H43 SING N N 43 YV1 C06 H11 SING N N 44 YV1 C07 H12 SING N N 45 YV1 C10 H47 SING N N 46 YV1 C10 H46 SING N N 47 YV1 C16 H48 SING N N 48 YV1 C16 H49 SING N N 49 YV1 C18 H50 SING N N 50 YV1 C20 H51 SING N N 51 YV1 C22 H52 SING N N 52 YV1 C28 H53 SING N N 53 YV1 C03 H38 SING N N 54 YV1 C03 H39 SING N N 55 YV1 C08 H44 SING N N 56 YV1 C08 H45 SING N N 57 YV1 C29 H54 SING N N 58 YV1 C30 H55 SING N N 59 YV1 N33 H56 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YV1 SMILES ACDLabs 12.01 "Clc1cc(cc(Cl)c1)COC(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1" YV1 InChI InChI 1.03 "InChI=1S/C23H23Cl2N5O3/c24-18-7-14(8-19(25)10-18)13-33-23(32)29-5-3-16-11-30(12-17(16)4-6-29)22(31)15-1-2-20-21(9-15)27-28-26-20/h1-2,7-10,16-17H,3-6,11-13H2,(H,26,27,28)" YV1 InChIKey InChI 1.03 ZNRUXBLWISFAAT-UHFFFAOYSA-N YV1 SMILES_CANONICAL CACTVS 3.385 "Clc1cc(Cl)cc(COC(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1" YV1 SMILES CACTVS 3.385 "Clc1cc(Cl)cc(COC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1" YV1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@H]4CCN(CC[C@H]4C3)C(=O)OCc5cc(cc(c5)Cl)Cl)nn[nH]2" YV1 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CCN(CCC4C3)C(=O)OCc5cc(cc(c5)Cl)Cl)nn[nH]2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YV1 "SYSTEMATIC NAME" ACDLabs 12.01 "(3,5-dichlorophenyl)methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate" YV1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3,5-bis(chloranyl)phenyl]methyl (3~{a}~{R},8~{a}~{S})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepine-6-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YV1 "Create component" 2021-04-01 RCSB YV1 "Initial release" 2022-04-13 RCSB ##