data_YV2 # _chem_comp.id YV2 _chem_comp.name "(2S)-2-{(5S)-7-[(2E)-4-(dimethylamino)-4-methylpent-2-enoyl]-1-oxo-2,7-diazaspiro[4.4]nonan-2-yl}-N-[(1P,8S,10R,14S,21M)-22-ethyl-21-{2-[(1S)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]-3-methylbutanamide (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C57 H76 N8 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 985.263 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YV2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G9P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YV2 C1 C1 C 0 1 N N N N N N 24.444 -16.164 28.425 8.526 3.631 -0.123 C1 YV2 1 YV2 C10 C2 C 0 1 Y N N N N N 30.864 -18.328 32.207 1.679 3.538 3.799 C10 YV2 2 YV2 C11 C3 C 0 1 Y N N N N N 31.830 -18.760 33.118 0.415 3.622 4.346 C11 YV2 3 YV2 C12 C4 C 0 1 Y N N N N N 32.293 -17.895 34.116 -0.507 2.617 4.120 C12 YV2 4 YV2 C13 C5 C 0 1 Y N N N N N 31.771 -16.583 34.181 -0.170 1.524 3.341 C13 YV2 5 YV2 C14 C6 C 0 1 N N N N N N 32.249 -15.634 35.259 -1.181 0.431 3.106 C14 YV2 6 YV2 C15 C7 C 0 1 N N S N N N 33.783 -15.420 35.208 -0.519 -0.721 2.350 C15 YV2 7 YV2 C16 C8 C 0 1 N N N N N N 35.350 -17.245 35.765 -1.634 -0.323 0.220 C16 YV2 8 YV2 C17 C9 C 0 1 N N S N N N 35.857 -18.149 36.868 -1.595 -0.104 -1.271 C17 YV2 9 YV2 C18 C10 C 0 1 N N N N N N 37.381 -18.105 37.027 -1.233 1.354 -1.562 C18 YV2 10 YV2 C19 C11 C 0 1 N N N N N N 37.791 -16.677 37.390 0.202 1.624 -1.104 C19 YV2 11 YV2 C2 C12 C 0 1 N N N N N N 25.689 -16.033 27.530 8.417 2.523 0.927 C2 YV2 12 YV2 C20 C13 C 0 1 N N N N N N 37.827 -18.957 38.200 -1.347 1.617 -3.065 C20 YV2 13 YV2 C21 C14 C 0 1 N N N N N N 36.164 -20.472 35.792 -3.180 -1.516 -2.764 C21 YV2 14 YV2 C22 C15 C 0 1 N N N N N N 35.427 -21.784 36.162 -4.542 -1.189 -3.421 C22 YV2 15 YV2 C23 C16 C 0 1 N N R N N N 33.999 -21.363 36.548 -5.176 -0.271 -2.368 C23 YV2 16 YV2 C24 C17 C 0 1 N N N N N N 33.048 -21.300 35.376 -6.029 0.827 -3.029 C24 YV2 17 YV2 C25 C18 C 0 1 N N N N N N 31.666 -21.287 35.979 -7.034 1.159 -1.896 C25 YV2 18 YV2 C26 C19 C 0 1 N N N N N N 33.244 -22.245 37.570 -6.159 -1.031 -1.475 C26 YV2 19 YV2 C27 C20 C 0 1 N N N N N N 30.793 -22.046 38.056 -8.403 -0.435 -0.519 C27 YV2 20 YV2 C28 C21 C 0 1 N N N N N N 30.949 -22.734 39.341 -9.518 0.521 -0.445 C28 YV2 21 YV2 C29 C22 C 0 1 N N N N N N 29.939 -23.459 39.853 -10.606 0.220 0.258 C29 YV2 22 YV2 C3 C23 C 0 1 Y N N N N N 27.452 -15.907 29.262 5.963 2.176 1.401 C3 YV2 23 YV2 C30 C24 C 0 1 N N N N N N 30.238 -24.073 41.209 -11.800 1.140 0.230 C30 YV2 24 YV2 C31 C25 C 0 1 N N N N N N 30.715 -22.925 42.095 -13.047 0.346 -0.165 C31 YV2 25 YV2 C32 C26 C 0 1 N N N N N N 28.967 -24.661 41.817 -12.003 1.754 1.616 C32 YV2 26 YV2 C33 C27 C 0 1 N N N N N N 30.861 -26.357 40.510 -11.526 1.671 -2.117 C33 YV2 27 YV2 C34 C28 C 0 1 N N N N N N 31.815 -25.413 42.490 -12.590 3.261 -0.632 C34 YV2 28 YV2 C35 C29 C 0 1 N N N N N N 34.205 -19.957 37.075 -4.029 0.306 -1.592 C35 YV2 29 YV2 C36 C30 C 0 1 N N N N N N 34.176 -13.997 35.529 -1.308 -1.988 2.569 C36 YV2 30 YV2 C37 C31 C 0 1 N N N N N N 34.428 -11.704 34.733 -1.672 -4.369 2.125 C37 YV2 31 YV2 C38 C32 C 0 1 N N N N N N 33.255 -10.827 34.287 -1.546 -5.220 0.861 C38 YV2 32 YV2 C39 C33 C 0 1 N N N N N N 32.814 -11.223 32.889 -0.084 -5.462 0.504 C39 YV2 33 YV2 C4 C34 C 0 1 Y N N N N N 28.206 -14.933 29.952 4.985 1.237 1.018 C4 YV2 34 YV2 C40 C35 C 0 1 N N S N N N 32.505 -12.735 32.863 0.822 -4.376 1.068 C40 YV2 35 YV2 C41 C36 C 0 1 N N N N N N 32.186 -13.085 31.472 2.077 -4.261 0.240 C41 YV2 36 YV2 C42 C37 C 0 1 N N N N N N 30.760 -12.594 29.544 4.086 -3.126 -0.386 C42 YV2 37 YV2 C43 C38 C 0 1 N N N N N N 29.572 -11.697 29.261 5.021 -2.070 0.210 C43 YV2 38 YV2 C44 C39 C 0 1 N N N N N N 29.760 -10.302 29.903 4.558 -1.719 1.625 C44 YV2 39 YV2 C45 C40 C 0 1 N N N N N N 29.425 -11.567 27.757 6.447 -2.620 0.261 C45 YV2 40 YV2 C46 C41 C 0 1 N N N N N N 28.310 -12.299 29.872 4.989 -0.814 -0.663 C46 YV2 41 YV2 C47 C42 C 0 1 Y N N N N N 27.826 -13.671 29.444 5.634 0.334 0.068 C47 YV2 42 YV2 C48 C43 C 0 1 Y N N N N N 26.832 -13.947 28.423 6.928 0.727 -0.029 C48 YV2 43 YV2 C49 C44 C 0 1 Y N N N N N 26.105 -12.951 27.609 7.957 0.074 -0.867 C49 YV2 44 YV2 C5 C45 C 0 1 Y N N N N N 29.123 -15.309 30.929 3.696 1.320 1.548 C5 YV2 45 YV2 C50 C46 C 0 1 Y N N N N N 26.259 -12.832 26.223 8.125 0.444 -2.201 C50 YV2 46 YV2 C51 C47 C 0 1 Y N N N N N 24.672 -11.093 26.153 9.837 -1.076 -2.469 C51 YV2 47 YV2 C52 C48 C 0 1 Y N N N N N 24.499 -11.177 27.530 9.729 -1.502 -1.158 C52 YV2 48 YV2 C53 C49 C 0 1 Y N N N N N 25.237 -12.118 28.272 8.782 -0.922 -0.332 C53 YV2 49 YV2 C54 C50 C 0 1 N N S N N N 27.172 -13.700 25.423 7.247 1.514 -2.796 C54 YV2 50 YV2 C55 C51 C 0 1 N N N N N N 28.091 -12.874 24.518 6.203 0.869 -3.710 C55 YV2 51 YV2 C56 C52 C 0 1 N N N N N N 27.017 -15.732 24.189 7.540 3.756 -3.593 C56 YV2 52 YV2 C57 C53 C 0 1 Y N N N N N 30.826 -16.179 33.265 1.088 1.435 2.781 C57 YV2 53 YV2 C6 C54 C 0 1 Y N N N N N 29.307 -16.649 31.270 3.385 2.346 2.428 C6 YV2 54 YV2 C7 C55 C 0 1 Y N N N N N 28.577 -17.646 30.588 4.358 3.288 2.779 C7 YV2 55 YV2 C8 C56 C 0 1 Y N N N N N 27.646 -17.268 29.609 5.625 3.203 2.277 C8 YV2 56 YV2 C9 C57 C 0 1 Y N N N N N 30.329 -17.047 32.284 2.023 2.442 3.010 C9 YV2 57 YV2 N1 N1 N 0 1 Y N N N N N 26.659 -15.307 28.360 7.137 1.827 0.770 N1 YV2 58 YV2 N2 N2 N 0 1 N N N N N N 34.401 -16.341 36.130 -0.485 -0.409 0.919 N2 YV2 59 YV2 N3 N3 N 0 1 N N N N N N 35.379 -19.531 36.605 -2.910 -0.403 -1.843 N3 YV2 60 YV2 N4 N4 N 0 1 N N N N N N 31.851 -21.897 37.276 -7.300 -0.131 -1.231 N4 YV2 61 YV2 N5 N5 N 0 1 N N N N N N 31.309 -25.101 41.141 -11.570 2.210 -0.751 N5 YV2 62 YV2 N6 N6 N 0 1 N N R N N N 34.058 -13.122 34.537 -0.947 -3.111 1.919 N6 YV2 63 YV2 N7 N7 N 0 1 N N N N N N 33.619 -13.557 33.325 0.118 -3.084 1.053 N7 YV2 64 YV2 N8 N8 N 0 1 Y N N N N N 25.529 -11.916 25.516 9.045 -0.134 -2.946 N8 YV2 65 YV2 O1 O1 O 0 1 N N N N N N 35.757 -17.373 34.612 -2.700 -0.423 0.790 O1 YV2 66 YV2 O2 O2 O 0 1 N N N N N N 29.699 -21.607 37.706 -8.476 -1.501 0.063 O2 YV2 67 YV2 O3 O3 O 0 1 N N N N N N 33.444 -19.314 37.791 -4.098 1.264 -0.852 O3 YV2 68 YV2 O4 O4 O 0 1 N N N N N N 34.564 -13.716 36.632 -2.257 -1.996 3.324 O4 YV2 69 YV2 O5 O5 O 0 1 N N N N N N 32.853 -13.792 30.746 2.366 -5.121 -0.558 O5 YV2 70 YV2 O6 O6 O 0 1 N N N N N N 31.049 -12.482 30.926 2.869 -3.188 0.401 O6 YV2 71 YV2 O7 O7 O 0 1 N N N N N N 26.332 -14.538 24.619 8.049 2.421 -3.556 O7 YV2 72 YV2 H1 H1 H 0 1 N N N N N N 23.655 -16.702 27.879 7.709 4.340 0.010 H1 YV2 73 YV2 H2 H2 H 0 1 N N N N N N 24.705 -16.722 29.336 9.478 4.149 -0.006 H2 YV2 74 YV2 H3 H3 H 0 1 N N N N N N 24.083 -15.162 28.699 8.470 3.194 -1.120 H3 YV2 75 YV2 H4 H4 H 0 1 N N N N N N 30.527 -18.999 31.431 2.399 4.323 3.977 H4 YV2 76 YV2 H5 H5 H 0 1 N N N N N N 32.221 -19.765 33.052 0.146 4.474 4.953 H5 YV2 77 YV2 H6 H6 H 0 1 N N N N N N 33.038 -18.225 34.825 -1.494 2.685 4.553 H6 YV2 78 YV2 H7 H7 H 0 1 N N N N N N 31.751 -14.663 35.123 -1.555 0.070 4.064 H7 YV2 79 YV2 H8 H8 H 0 1 N N N N N N 31.981 -16.049 36.242 -2.010 0.823 2.517 H8 YV2 80 YV2 H9 H9 H 0 1 N N N N N N 34.121 -15.649 34.187 0.498 -0.858 2.715 H9 YV2 81 YV2 H10 H10 H 0 1 N N N N N N 35.414 -17.807 37.815 -0.847 -0.760 -1.715 H10 YV2 82 YV2 H11 H11 H 0 1 N N N N N N 37.876 -18.427 36.099 -1.915 2.013 -1.025 H11 YV2 83 YV2 H12 H12 H 0 1 N N N N N N 38.884 -16.627 37.508 0.884 0.959 -1.635 H12 YV2 84 YV2 H13 H13 H 0 1 N N N N N N 37.477 -15.991 36.589 0.464 2.660 -1.320 H13 YV2 85 YV2 H14 H14 H 0 1 N N N N N N 37.307 -16.385 38.334 0.281 1.445 -0.032 H14 YV2 86 YV2 H15 H15 H 0 1 N N N N N N 25.455 -15.465 26.618 9.234 1.815 0.794 H15 YV2 87 YV2 H16 H16 H 0 1 N N N N N N 26.077 -17.025 27.255 8.473 2.960 1.923 H16 YV2 88 YV2 H17 H17 H 0 1 N N N N N N 38.922 -18.909 38.293 -2.369 1.425 -3.391 H17 YV2 89 YV2 H18 H18 H 0 1 N N N N N N 37.364 -18.580 39.124 -1.088 2.655 -3.273 H18 YV2 90 YV2 H19 H19 H 0 1 N N N N N N 37.518 -20.000 38.034 -0.664 0.958 -3.602 H19 YV2 91 YV2 H20 H20 H 0 1 N N N N N N 37.222 -20.494 36.093 -3.243 -2.454 -2.213 H20 YV2 92 YV2 H21 H21 H 0 1 N N N N N N 36.093 -20.248 34.717 -2.400 -1.575 -3.522 H21 YV2 93 YV2 H22 H22 H 0 1 N N N N N N 35.406 -22.468 35.301 -4.404 -0.663 -4.366 H22 YV2 94 YV2 H23 H23 H 0 1 N N N N N N 35.924 -22.277 37.010 -5.136 -2.092 -3.561 H23 YV2 95 YV2 H24 H24 H 0 1 N N N N N N 33.177 -22.180 34.729 -5.421 1.696 -3.281 H24 YV2 96 YV2 H25 H25 H 0 1 N N N N N N 33.220 -20.385 34.790 -6.544 0.444 -3.910 H25 YV2 97 YV2 H26 H26 H 0 1 N N N N N N 31.292 -20.257 36.080 -6.592 1.864 -1.192 H26 YV2 98 YV2 H27 H27 H 0 1 N N N N N N 30.965 -21.873 35.366 -7.955 1.567 -2.313 H27 YV2 99 YV2 H28 H28 H 0 1 N N N N N N 33.437 -23.314 37.399 -6.499 -1.934 -1.981 H28 YV2 100 YV2 H29 H29 H 0 1 N N N N N N 33.514 -21.985 38.604 -5.680 -1.291 -0.531 H29 YV2 101 YV2 H30 H30 H 0 1 N N N N N N 31.882 -22.658 39.880 -9.453 1.467 -0.962 H30 YV2 102 YV2 H32 H32 H 0 1 N N N N N N 28.996 -23.593 39.344 -10.635 -0.683 0.849 H32 YV2 103 YV2 H34 H34 H 0 1 N N N N N N 30.949 -23.309 43.099 -13.217 -0.448 0.563 H34 YV2 104 YV2 H35 H35 H 0 1 N N N N N N 31.617 -22.473 41.656 -13.910 1.011 -0.185 H35 YV2 105 YV2 H36 H36 H 0 1 N N N N N N 29.923 -22.165 42.169 -12.901 -0.092 -1.152 H36 YV2 106 YV2 H37 H37 H 0 1 N N N N N N 29.199 -25.102 42.798 -11.115 2.320 1.897 H37 YV2 107 YV2 H38 H38 H 0 1 N N N N N N 28.218 -23.865 41.941 -12.866 2.420 1.595 H38 YV2 108 YV2 H39 H39 H 0 1 N N N N N N 28.568 -25.440 41.150 -12.174 0.961 2.343 H39 YV2 109 YV2 H40 H40 H 0 1 N N N N N N 31.694 -27.075 40.489 -12.512 1.293 -2.390 H40 YV2 110 YV2 H41 H41 H 0 1 N N N N N N 30.027 -26.780 41.088 -11.235 2.461 -2.809 H41 YV2 111 YV2 H42 H42 H 0 1 N N N N N N 30.528 -26.152 39.482 -10.800 0.860 -2.164 H42 YV2 112 YV2 H43 H43 H 0 1 N N N N N N 32.155 -24.487 42.978 -13.576 2.832 -0.807 H43 YV2 113 YV2 H44 H44 H 0 1 N N N N N N 31.011 -25.868 43.087 -12.553 3.691 0.370 H44 YV2 114 YV2 H45 H45 H 0 1 N N N N N N 32.657 -26.116 42.412 -12.396 4.040 -1.369 H45 YV2 115 YV2 H46 H46 H 0 1 N N N N N N 35.318 -11.467 34.131 -2.724 -4.158 2.320 H46 YV2 116 YV2 H47 H47 H 0 1 N N N N N N 34.644 -11.521 35.796 -1.243 -4.904 2.973 H47 YV2 117 YV2 H48 H48 H 0 1 N N N N N N 33.568 -9.773 34.285 -2.037 -6.179 1.025 H48 YV2 118 YV2 H49 H49 H 0 1 N N N N N N 32.415 -10.959 34.985 -2.034 -4.705 0.034 H49 YV2 119 YV2 H50 H50 H 0 1 N N N N N N 33.618 -11.000 32.173 0.225 -6.427 0.906 H50 YV2 120 YV2 H51 H51 H 0 1 N N N N N N 31.911 -10.658 32.614 0.018 -5.480 -0.581 H51 YV2 121 YV2 H52 H52 H 0 1 N N N N N N 31.625 -12.920 33.496 1.094 -4.620 2.097 H52 YV2 122 YV2 H53 H53 H 0 1 N N N N N N 30.513 -13.636 29.294 3.842 -2.858 -1.414 H53 YV2 123 YV2 H54 H54 H 0 1 N N N N N N 31.627 -12.270 28.950 4.579 -4.098 -0.370 H54 YV2 124 YV2 H55 H55 H 0 1 N N N N N N 29.865 -10.410 30.993 4.579 -2.614 2.247 H55 YV2 125 YV2 H56 H56 H 0 1 N N N N N N 30.664 -9.829 29.493 5.223 -0.966 2.049 H56 YV2 126 YV2 H57 H57 H 0 1 N N N N N N 28.884 -9.675 29.680 3.542 -1.326 1.589 H57 YV2 127 YV2 H58 H58 H 0 1 N N N N N N 28.567 -10.919 27.527 6.803 -2.801 -0.754 H58 YV2 128 YV2 H59 H59 H 0 1 N N N N N N 30.341 -11.126 27.336 7.099 -1.897 0.751 H59 YV2 129 YV2 H60 H60 H 0 1 N N N N N N 29.261 -12.562 27.317 6.456 -3.555 0.821 H60 YV2 130 YV2 H61 H61 H 0 1 N N N N N N 28.479 -12.349 30.958 5.531 -1.004 -1.589 H61 YV2 131 YV2 H62 H62 H 0 1 N N N N N N 27.491 -11.596 29.660 3.954 -0.560 -0.894 H62 YV2 132 YV2 H63 H63 H 0 1 N N N N N N 29.703 -14.549 31.432 2.947 0.591 1.274 H63 YV2 133 YV2 H64 H64 H 0 1 N N N N N N 24.114 -10.361 25.588 10.575 -1.526 -3.116 H64 YV2 134 YV2 H65 H65 H 0 1 N N N N N N 23.800 -10.522 28.029 10.378 -2.280 -0.782 H65 YV2 135 YV2 H66 H66 H 0 1 N N N N N N 25.123 -12.184 29.344 8.683 -1.230 0.698 H66 YV2 136 YV2 H67 H67 H 0 1 N N N N N N 27.788 -14.310 26.100 6.743 2.057 -1.996 H67 YV2 137 YV2 H68 H68 H 0 1 N N N N N N 28.735 -12.232 25.137 5.591 0.177 -3.131 H68 YV2 138 YV2 H69 H69 H 0 1 N N N N N N 28.717 -13.550 23.917 5.568 1.643 -4.140 H69 YV2 139 YV2 H70 H70 H 0 1 N N N N N N 27.481 -12.248 23.850 6.707 0.326 -4.510 H70 YV2 140 YV2 H71 H71 H 0 1 N N N N N N 26.338 -16.344 23.577 8.205 4.381 -4.188 H71 YV2 141 YV2 H72 H72 H 0 1 N N N N N N 27.899 -15.454 23.593 6.546 3.753 -4.041 H72 YV2 142 YV2 H73 H73 H 0 1 N N N N N N 27.337 -16.308 25.070 7.481 4.151 -2.579 H73 YV2 143 YV2 H74 H74 H 0 1 N N N N N N 30.457 -15.165 33.304 1.347 0.585 2.167 H74 YV2 144 YV2 H75 H75 H 0 1 N N N N N N 28.734 -18.690 30.818 4.104 4.092 3.454 H75 YV2 145 YV2 H76 H76 H 0 1 N N N N N N 27.065 -18.029 29.109 6.367 3.934 2.562 H76 YV2 146 YV2 H77 H77 H 0 1 N N N N N N 34.117 -16.314 37.088 0.365 -0.264 0.474 H77 YV2 147 YV2 H79 H79 H 0 1 N N N N N N 33.317 -14.507 33.405 0.747 -2.327 1.277 H79 YV2 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YV2 C56 O7 SING N N 1 YV2 C55 C54 SING N N 2 YV2 O7 C54 SING N N 3 YV2 C54 C50 SING N N 4 YV2 N8 C51 DOUB Y N 5 YV2 N8 C50 SING Y N 6 YV2 C51 C52 SING Y N 7 YV2 C50 C49 DOUB Y N 8 YV2 C52 C53 DOUB Y N 9 YV2 C2 N1 SING N N 10 YV2 C2 C1 SING N N 11 YV2 C49 C53 SING Y N 12 YV2 C49 C48 SING N N 13 YV2 C45 C43 SING N N 14 YV2 N1 C48 SING Y N 15 YV2 N1 C3 SING Y N 16 YV2 C48 C47 DOUB Y N 17 YV2 C43 C42 SING N N 18 YV2 C43 C46 SING N N 19 YV2 C43 C44 SING N N 20 YV2 C3 C8 DOUB Y N 21 YV2 C3 C4 SING Y N 22 YV2 C47 C46 SING N N 23 YV2 C47 C4 SING Y N 24 YV2 C42 O6 SING N N 25 YV2 C8 C7 SING Y N 26 YV2 C4 C5 DOUB Y N 27 YV2 C7 C6 DOUB Y N 28 YV2 O5 C41 DOUB N N 29 YV2 O6 C41 SING N N 30 YV2 C5 C6 SING Y N 31 YV2 C6 C9 SING N N 32 YV2 C41 C40 SING N N 33 YV2 C10 C9 DOUB Y N 34 YV2 C10 C11 SING Y N 35 YV2 C9 C57 SING Y N 36 YV2 C40 C39 SING N N 37 YV2 C40 N7 SING N N 38 YV2 C39 C38 SING N N 39 YV2 C11 C12 DOUB Y N 40 YV2 C57 C13 DOUB Y N 41 YV2 N7 N6 SING N N 42 YV2 C12 C13 SING Y N 43 YV2 C13 C14 SING N N 44 YV2 C38 C37 SING N N 45 YV2 N6 C37 SING N N 46 YV2 N6 C36 SING N N 47 YV2 O1 C16 DOUB N N 48 YV2 C15 C14 SING N N 49 YV2 C15 C36 SING N N 50 YV2 C15 N2 SING N N 51 YV2 C24 C25 SING N N 52 YV2 C24 C23 SING N N 53 YV2 C36 O4 DOUB N N 54 YV2 C16 N2 SING N N 55 YV2 C16 C17 SING N N 56 YV2 C21 C22 SING N N 57 YV2 C21 N3 SING N N 58 YV2 C25 N4 SING N N 59 YV2 C22 C23 SING N N 60 YV2 C23 C35 SING N N 61 YV2 C23 C26 SING N N 62 YV2 N3 C17 SING N N 63 YV2 N3 C35 SING N N 64 YV2 C17 C18 SING N N 65 YV2 C18 C19 SING N N 66 YV2 C18 C20 SING N N 67 YV2 C35 O3 DOUB N N 68 YV2 N4 C26 SING N N 69 YV2 N4 C27 SING N N 70 YV2 O2 C27 DOUB N N 71 YV2 C27 C28 SING N N 72 YV2 C28 C29 DOUB N E 73 YV2 C29 C30 SING N N 74 YV2 C33 N5 SING N N 75 YV2 N5 C30 SING N N 76 YV2 N5 C34 SING N N 77 YV2 C30 C32 SING N N 78 YV2 C30 C31 SING N N 79 YV2 C1 H1 SING N N 80 YV2 C1 H2 SING N N 81 YV2 C1 H3 SING N N 82 YV2 C10 H4 SING N N 83 YV2 C11 H5 SING N N 84 YV2 C12 H6 SING N N 85 YV2 C14 H7 SING N N 86 YV2 C14 H8 SING N N 87 YV2 C15 H9 SING N N 88 YV2 C17 H10 SING N N 89 YV2 C18 H11 SING N N 90 YV2 C19 H12 SING N N 91 YV2 C19 H13 SING N N 92 YV2 C19 H14 SING N N 93 YV2 C2 H15 SING N N 94 YV2 C2 H16 SING N N 95 YV2 C20 H17 SING N N 96 YV2 C20 H18 SING N N 97 YV2 C20 H19 SING N N 98 YV2 C21 H20 SING N N 99 YV2 C21 H21 SING N N 100 YV2 C22 H22 SING N N 101 YV2 C22 H23 SING N N 102 YV2 C24 H24 SING N N 103 YV2 C24 H25 SING N N 104 YV2 C25 H26 SING N N 105 YV2 C25 H27 SING N N 106 YV2 C26 H28 SING N N 107 YV2 C26 H29 SING N N 108 YV2 C28 H30 SING N N 109 YV2 C29 H32 SING N N 110 YV2 C31 H34 SING N N 111 YV2 C31 H35 SING N N 112 YV2 C31 H36 SING N N 113 YV2 C32 H37 SING N N 114 YV2 C32 H38 SING N N 115 YV2 C32 H39 SING N N 116 YV2 C33 H40 SING N N 117 YV2 C33 H41 SING N N 118 YV2 C33 H42 SING N N 119 YV2 C34 H43 SING N N 120 YV2 C34 H44 SING N N 121 YV2 C34 H45 SING N N 122 YV2 C37 H46 SING N N 123 YV2 C37 H47 SING N N 124 YV2 C38 H48 SING N N 125 YV2 C38 H49 SING N N 126 YV2 C39 H50 SING N N 127 YV2 C39 H51 SING N N 128 YV2 C40 H52 SING N N 129 YV2 C42 H53 SING N N 130 YV2 C42 H54 SING N N 131 YV2 C44 H55 SING N N 132 YV2 C44 H56 SING N N 133 YV2 C44 H57 SING N N 134 YV2 C45 H58 SING N N 135 YV2 C45 H59 SING N N 136 YV2 C45 H60 SING N N 137 YV2 C46 H61 SING N N 138 YV2 C46 H62 SING N N 139 YV2 C5 H63 SING N N 140 YV2 C51 H64 SING N N 141 YV2 C52 H65 SING N N 142 YV2 C53 H66 SING N N 143 YV2 C54 H67 SING N N 144 YV2 C55 H68 SING N N 145 YV2 C55 H69 SING N N 146 YV2 C55 H70 SING N N 147 YV2 C56 H71 SING N N 148 YV2 C56 H72 SING N N 149 YV2 C56 H73 SING N N 150 YV2 C57 H74 SING N N 151 YV2 C7 H75 SING N N 152 YV2 C8 H76 SING N N 153 YV2 N2 H77 SING N N 154 YV2 N7 H79 SING N N 155 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YV2 SMILES ACDLabs 12.01 "CN(C)C(C)(C)/C=C/C(=O)N1CCC2(C1)CCN(C2=O)C(C(C)C)C(=O)NC1Cc2cccc(c2)c2ccc3c(c2)c(CC(C)(C)COC(=O)C2CCCN(N2)C1=O)c(n3CC)c1cccnc1C(C)OC" YV2 InChI InChI 1.06 "InChI=1S/C57H76N8O7/c1-12-63-46-21-20-40-32-42(46)43(50(63)41-18-14-26-58-48(41)37(4)71-11)33-55(5,6)35-72-53(69)44-19-15-27-65(60-44)52(68)45(31-38-16-13-17-39(40)30-38)59-51(67)49(36(2)3)64-29-25-57(54(64)70)24-28-62(34-57)47(66)22-23-56(7,8)61(9)10/h13-14,16-18,20-23,26,30,32,36-37,44-45,49,60H,12,15,19,24-25,27-29,31,33-35H2,1-11H3,(H,59,67)/b23-22+/t37-,44-,45-,49-,57-/m0/s1" YV2 InChIKey InChI 1.06 UACOSZLRWXNXST-XDTKWSOLSA-N YV2 SMILES_CANONICAL CACTVS 3.385 "CCn1c2ccc3cc2c(CC(C)(C)COC(=O)[C@@H]4CCC[N@@](N4)C(=O)[C@H](Cc5cccc3c5)NC(=O)[C@H](C(C)C)N6CC[C@]7(CCN(C7)C(=O)\C=C\C(C)(C)N(C)C)C6=O)c1c8cccnc8[C@H](C)OC" YV2 SMILES CACTVS 3.385 "CCn1c2ccc3cc2c(CC(C)(C)COC(=O)[CH]4CCC[N](N4)C(=O)[CH](Cc5cccc3c5)NC(=O)[CH](C(C)C)N6CC[C]7(CCN(C7)C(=O)C=CC(C)(C)N(C)C)C6=O)c1c8cccnc8[CH](C)OC" YV2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCn1c2ccc-3cc2c(c1c4cccnc4[C@H](C)OC)CC(COC(=O)[C@@H]5CCCN(N5)C(=O)[C@H](Cc6cccc3c6)NC(=O)[C@H](C(C)C)N7CC[C@@]8(C7=O)CCN(C8)C(=O)/C=C/C(C)(C)N(C)C)(C)C" YV2 SMILES "OpenEye OEToolkits" 2.0.7 "CCn1c2ccc-3cc2c(c1c4cccnc4C(C)OC)CC(COC(=O)C5CCCN(N5)C(=O)C(Cc6cccc3c6)NC(=O)C(C(C)C)N7CCC8(C7=O)CCN(C8)C(=O)C=CC(C)(C)N(C)C)(C)C" # _pdbx_chem_comp_identifier.comp_id YV2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(2S)-2-{(5S)-7-[(2E)-4-(dimethylamino)-4-methylpent-2-enoyl]-1-oxo-2,7-diazaspiro[4.4]nonan-2-yl}-N-[(1P,8S,10R,14S,21M)-22-ethyl-21-{2-[(1S)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]-3-methylbutanamide (non-preferred name)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YV2 "Create component" 2023-02-22 RCSB YV2 "Initial release" 2023-08-16 RCSB YV2 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YV2 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C29 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #