data_YV4 # _chem_comp.id YV4 _chem_comp.name "(3S)-3-aminopyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C4 H8 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2021-06-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 100.119 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YV4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S9K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YV4 N01 N1 N 0 1 N N N 9.648 21.710 -33.268 -1.541 1.340 0.251 N01 YV4 1 YV4 C02 C1 C 0 1 N N S 9.121 22.641 -32.241 -0.418 0.706 -0.451 C02 YV4 2 YV4 C03 C2 C 0 1 N N N 9.772 23.748 -32.008 0.926 1.305 0.026 C03 YV4 3 YV4 C04 C3 C 0 1 N N N 8.629 24.667 -31.423 1.847 0.066 0.009 C04 YV4 4 YV4 N05 N2 N 0 1 N N N 7.437 24.314 -32.310 0.955 -1.088 0.175 N05 YV4 5 YV4 C06 C4 C 0 1 N N N 7.720 23.136 -32.875 -0.322 -0.758 -0.082 C06 YV4 6 YV4 O07 O1 O 0 1 N N N 7.077 22.557 -33.691 -1.262 -1.523 -0.025 O07 YV4 7 YV4 H012 H1 H 0 0 N N N 9.048 20.913 -33.335 -2.418 0.913 -0.008 H012 YV4 8 YV4 H1 H2 H 0 1 N N N 9.684 22.175 -34.153 -1.407 1.311 1.251 H1 YV4 9 YV4 H021 H4 H 0 0 N N N 8.897 22.085 -31.319 -0.528 0.821 -1.529 H021 YV4 10 YV4 H032 H5 H 0 0 N N N 10.578 23.594 -31.276 1.282 2.066 -0.669 H032 YV4 11 YV4 H031 H6 H 0 0 N N N 10.193 24.169 -32.933 0.836 1.712 1.033 H031 YV4 12 YV4 H042 H7 H 0 0 N N N 8.426 24.427 -30.369 2.374 0.001 -0.943 H042 YV4 13 YV4 H041 H8 H 0 0 N N N 8.890 25.732 -31.512 2.560 0.115 0.832 H041 YV4 14 YV4 H051 H9 H 0 0 N N N 6.608 24.857 -32.442 1.250 -1.974 0.437 H051 YV4 15 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YV4 C02 N01 SING N N 1 YV4 C03 C02 SING N N 2 YV4 C04 C03 SING N N 3 YV4 N05 C04 SING N N 4 YV4 C06 N05 SING N N 5 YV4 O07 C06 DOUB N N 6 YV4 C02 C06 SING N N 7 YV4 N01 H012 SING N N 8 YV4 N01 H1 SING N N 9 YV4 C02 H021 SING N N 10 YV4 C03 H032 SING N N 11 YV4 C03 H031 SING N N 12 YV4 C04 H042 SING N N 13 YV4 C04 H041 SING N N 14 YV4 N05 H051 SING N N 15 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YV4 SMILES ACDLabs 12.01 O=C1NCCC1N YV4 InChI InChI 1.03 "InChI=1S/C4H8N2O/c5-3-1-2-6-4(3)7/h3H,1-2,5H2,(H,6,7)/t3-/m0/s1" YV4 InChIKey InChI 1.03 YNDAMDVOGKACTP-VKHMYHEASA-N YV4 SMILES_CANONICAL CACTVS 3.385 N[C@H]1CCNC1=O YV4 SMILES CACTVS 3.385 N[CH]1CCNC1=O YV4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CNC(=O)[C@H]1N" YV4 SMILES "OpenEye OEToolkits" 2.0.7 "C1CNC(=O)C1N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YV4 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-aminopyrrolidin-2-one" YV4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-azanylpyrrolidin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YV4 "Create component" 2021-04-01 RCSB YV4 "Initial release" 2021-06-23 RCSB ##