data_YV8 # _chem_comp.id YV8 _chem_comp.name "7-[(1~{S})-1-[(5~{S})-5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H28 F N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.570 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YV8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PG9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YV8 C10 C1 C 0 1 Y N N N N N -21.868 -11.803 9.907 -0.919 0.766 0.415 C10 YV8 1 YV8 C01 C2 C 0 1 N N N N N N -22.611 -12.389 15.679 4.597 3.255 0.743 C01 YV8 2 YV8 C02 C3 C 0 1 N N S N N N -23.337 -11.996 14.402 3.683 2.043 0.934 C02 YV8 3 YV8 C03 C4 C 0 1 Y N N N N N -22.808 -12.807 13.219 2.364 2.296 0.251 C03 YV8 4 YV8 C04 C5 C 0 1 Y N N N N N -22.534 -12.139 12.013 1.259 1.501 0.549 C04 YV8 5 YV8 C06 C6 C 0 1 Y N N N N N -22.282 -10.625 10.499 -0.227 -0.010 1.328 C06 YV8 6 YV8 C07 C7 C 0 1 N N N N N N -22.475 -9.283 9.878 -0.788 -1.127 2.093 C07 YV8 7 YV8 C11 C8 C 0 1 Y N N N N N -21.322 -11.962 8.508 -2.343 0.631 0.037 C11 YV8 8 YV8 C12 C9 C 0 1 Y N N N N N -20.425 -10.997 8.059 -3.344 0.868 0.981 C12 YV8 9 YV8 C13 C10 C 0 1 Y N N N N N -19.899 -11.091 6.790 -4.672 0.740 0.621 C13 YV8 10 YV8 C15 C11 C 0 1 Y N N N N N -20.248 -12.149 5.972 -5.009 0.377 -0.673 C15 YV8 11 YV8 C16 C12 C 0 1 N N N N N N -19.644 -12.269 4.564 -6.459 0.233 -1.058 C16 YV8 12 YV8 C18 C13 C 0 1 N N N N N N -20.777 -9.729 3.686 -8.735 -1.415 -1.278 C18 YV8 13 YV8 C21 C14 C 0 1 Y N N N N N -21.116 -13.120 6.435 -4.021 0.141 -1.611 C21 YV8 14 YV8 C22 C15 C 0 1 Y N N N N N -21.655 -13.024 7.704 -2.691 0.272 -1.266 C22 YV8 15 YV8 C23 C16 C 0 1 Y N N N N N -22.009 -12.785 10.904 0.037 1.754 -0.100 C23 YV8 16 YV8 C24 C17 C 0 1 Y N N N N N -21.762 -14.168 10.973 -0.058 2.792 -1.030 C24 YV8 17 YV8 C25 C18 C 0 1 Y N N N N N -22.026 -14.844 12.158 1.038 3.559 -1.306 C25 YV8 18 YV8 C26 C19 C 0 1 Y N N N N N -22.545 -14.168 13.275 2.247 3.314 -0.669 C26 YV8 19 YV8 C28 C20 C 0 1 N N N N N N -25.560 -13.151 15.201 4.706 -0.354 1.086 C28 YV8 20 YV8 C29 C21 C 0 1 N N S N N N -26.957 -12.572 15.148 5.316 -1.266 0.003 C29 YV8 21 YV8 C30 C22 C 0 1 N N N N N N -28.047 -13.597 14.927 6.782 -1.568 0.319 C30 YV8 22 YV8 C31 C23 C 0 1 N N N N N N -28.409 -14.338 16.210 7.327 -2.571 -0.699 C31 YV8 23 YV8 C32 C24 C 0 1 N N N N N N -29.762 -15.058 16.117 8.793 -2.873 -0.383 C32 YV8 24 YV8 C35 C25 C 0 1 N N N N N N -25.625 -11.352 13.720 4.632 0.700 -0.943 C35 YV8 25 YV8 F14 F1 F 0 1 N N N N N N -19.033 -10.108 6.379 -5.642 0.968 1.533 F14 YV8 26 YV8 N05 N1 N 0 1 Y N N N N N -22.673 -10.852 11.715 1.076 0.438 1.401 N05 YV8 27 YV8 N27 N2 N 0 1 N N N N N N -24.785 -12.172 14.509 4.316 0.858 0.350 N27 YV8 28 YV8 N33 N3 N 0 1 N N N N N N -29.795 -16.235 16.965 9.316 -3.837 -1.361 N33 YV8 29 YV8 O08 O1 O 0 1 N N N N N N -22.965 -9.292 8.703 -1.955 -1.437 1.949 O08 YV8 30 YV8 O09 O2 O 0 1 N N N N N N -22.417 -8.232 10.595 -0.009 -1.810 2.957 O09 YV8 31 YV8 O19 O3 O 0 1 N N N N N N -22.057 -12.115 3.438 -6.289 -2.335 -1.633 O19 YV8 32 YV8 O20 O4 O 0 1 N N N N N N -20.202 -11.673 1.967 -6.955 -1.719 0.644 O20 YV8 33 YV8 O34 O5 O 0 1 N N N N N N -26.953 -11.645 14.014 5.205 -0.482 -1.220 O34 YV8 34 YV8 O36 O6 O 0 1 N N N N N N -25.250 -10.524 12.927 4.420 1.548 -1.787 O36 YV8 35 YV8 S17 S1 S 0 1 N N N N N N -20.725 -11.501 3.313 -6.999 -1.472 -0.754 S17 YV8 36 YV8 H013 H1 H 0 0 N N N N N N -23.002 -11.798 16.520 4.127 4.137 1.178 H013 YV8 37 YV8 H011 H2 H 0 0 N N N N N N -22.771 -13.459 15.877 5.551 3.072 1.237 H011 YV8 38 YV8 H012 H3 H 0 0 N N N N N N -21.535 -12.195 15.563 4.765 3.420 -0.321 H012 YV8 39 YV8 H021 H4 H 0 0 N N N N N N -23.125 -10.935 14.205 3.516 1.878 1.998 H021 YV8 40 YV8 H121 H5 H 0 0 N N N N N N -20.143 -10.178 8.704 -3.081 1.150 1.990 H121 YV8 41 YV8 H161 H6 H 0 0 N N N N N N -19.513 -13.333 4.320 -7.063 0.917 -0.462 H161 YV8 42 YV8 H162 H7 H 0 0 N N N N N N -18.666 -11.766 4.550 -6.580 0.469 -2.115 H162 YV8 43 YV8 H182 H8 H 0 0 N N N N N N -21.171 -9.579 4.702 -9.272 -0.683 -0.675 H182 YV8 44 YV8 H181 H9 H 0 0 N N N N N N -19.762 -9.311 3.621 -8.788 -1.130 -2.328 H181 YV8 45 YV8 H183 H10 H 0 0 N N N N N N -21.430 -9.221 2.961 -9.187 -2.398 -1.144 H183 YV8 46 YV8 H211 H11 H 0 0 N N N N N N -21.374 -13.957 5.803 -4.290 -0.141 -2.618 H211 YV8 47 YV8 H221 H12 H 0 0 N N N N N N -22.336 -13.782 8.062 -1.921 0.088 -2.000 H221 YV8 48 YV8 H241 H13 H 0 0 N N N N N N -21.372 -14.698 10.116 -0.996 2.987 -1.530 H241 YV8 49 YV8 H251 H14 H 0 0 N N N N N N -21.829 -15.904 12.221 0.964 4.361 -2.025 H251 YV8 50 YV8 H261 H15 H 0 0 N N N N N N -22.741 -14.713 14.186 3.105 3.928 -0.898 H261 YV8 51 YV8 H281 H16 H 0 0 N N N N N N -25.515 -14.125 14.691 3.834 -0.826 1.537 H281 YV8 52 YV8 H282 H17 H 0 0 N N N N N N -25.218 -13.265 16.240 5.448 -0.117 1.849 H282 YV8 53 YV8 H291 H18 H 0 0 N N N N N N -27.158 -12.023 16.080 4.746 -2.191 -0.083 H291 YV8 54 YV8 H301 H19 H 0 0 N N N N N N -28.944 -13.085 14.549 7.362 -0.646 0.268 H301 YV8 55 YV8 H302 H20 H 0 0 N N N N N N -27.700 -14.328 14.182 6.858 -1.990 1.322 H302 YV8 56 YV8 H311 H21 H 0 0 N N N N N N -27.627 -15.083 16.418 6.747 -3.492 -0.648 H311 YV8 57 YV8 H312 H22 H 0 0 N N N N N N -28.453 -13.612 17.035 7.251 -2.149 -1.701 H312 YV8 58 YV8 H322 H23 H 0 0 N N N N N N -30.558 -14.367 16.433 9.373 -1.952 -0.434 H322 YV8 59 YV8 H321 H24 H 0 0 N N N N N N -29.934 -15.363 15.074 8.869 -3.295 0.619 H321 YV8 60 YV8 H051 H25 H 0 0 N N N N N N -23.029 -10.157 12.339 1.763 0.058 1.971 H051 YV8 61 YV8 H331 H26 H 0 0 N N N N N N -30.686 -16.681 16.883 9.198 -3.496 -2.303 H331 YV8 62 YV8 H1 H27 H 0 1 N N N N N N -29.077 -16.871 16.681 10.284 -4.053 -1.173 H1 YV8 63 YV8 H2 H29 H 0 1 N N N N N N -22.787 -7.500 10.115 -0.467 -2.528 3.415 H2 YV8 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YV8 O20 S17 DOUB N N 1 YV8 S17 O19 DOUB N N 2 YV8 S17 C18 SING N N 3 YV8 S17 C16 SING N N 4 YV8 C16 C15 SING N N 5 YV8 C15 C21 DOUB Y N 6 YV8 C15 C13 SING Y N 7 YV8 F14 C13 SING N N 8 YV8 C21 C22 SING Y N 9 YV8 C13 C12 DOUB Y N 10 YV8 C22 C11 DOUB Y N 11 YV8 C12 C11 SING Y N 12 YV8 C11 C10 SING N N 13 YV8 O08 C07 DOUB N N 14 YV8 C07 C06 SING N N 15 YV8 C07 O09 SING N N 16 YV8 C10 C06 DOUB Y N 17 YV8 C10 C23 SING Y N 18 YV8 C06 N05 SING Y N 19 YV8 C23 C24 DOUB Y N 20 YV8 C23 C04 SING Y N 21 YV8 C24 C25 SING Y N 22 YV8 N05 C04 SING Y N 23 YV8 C04 C03 DOUB Y N 24 YV8 C25 C26 DOUB Y N 25 YV8 O36 C35 DOUB N N 26 YV8 C03 C26 SING Y N 27 YV8 C03 C02 SING N N 28 YV8 C35 O34 SING N N 29 YV8 C35 N27 SING N N 30 YV8 O34 C29 SING N N 31 YV8 C02 N27 SING N N 32 YV8 C02 C01 SING N N 33 YV8 N27 C28 SING N N 34 YV8 C30 C29 SING N N 35 YV8 C30 C31 SING N N 36 YV8 C29 C28 SING N N 37 YV8 C32 C31 SING N N 38 YV8 C32 N33 SING N N 39 YV8 C01 H013 SING N N 40 YV8 C01 H011 SING N N 41 YV8 C01 H012 SING N N 42 YV8 C02 H021 SING N N 43 YV8 C12 H121 SING N N 44 YV8 C16 H161 SING N N 45 YV8 C16 H162 SING N N 46 YV8 C18 H182 SING N N 47 YV8 C18 H181 SING N N 48 YV8 C18 H183 SING N N 49 YV8 C21 H211 SING N N 50 YV8 C22 H221 SING N N 51 YV8 C24 H241 SING N N 52 YV8 C25 H251 SING N N 53 YV8 C26 H261 SING N N 54 YV8 C28 H281 SING N N 55 YV8 C28 H282 SING N N 56 YV8 C29 H291 SING N N 57 YV8 C30 H301 SING N N 58 YV8 C30 H302 SING N N 59 YV8 C31 H311 SING N N 60 YV8 C31 H312 SING N N 61 YV8 C32 H322 SING N N 62 YV8 C32 H321 SING N N 63 YV8 N05 H051 SING N N 64 YV8 N33 H331 SING N N 65 YV8 N33 H1 SING N N 66 YV8 O09 H2 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YV8 InChI InChI 1.06 "InChI=1S/C25H28FN3O6S/c1-14(29-12-17(5-4-10-27)35-25(29)32)18-6-3-7-19-21(23(24(30)31)28-22(18)19)15-8-9-16(20(26)11-15)13-36(2,33)34/h3,6-9,11,14,17,28H,4-5,10,12-13,27H2,1-2H3,(H,30,31)/t14-,17-/m0/s1" YV8 InChIKey InChI 1.06 QAHBWVAOQZLFQE-YOEHRIQHSA-N YV8 SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@H](CCCN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YV8 SMILES CACTVS 3.385 "C[CH](N1C[CH](CCCN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YV8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C[C@@H](OC4=O)CCCN" YV8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CCCN" # _pdbx_chem_comp_identifier.comp_id YV8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[(5~{S})-5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YV8 "Create component" 2023-06-21 PDBE YV8 "Initial release" 2024-07-10 RCSB #