data_YVA # _chem_comp.id YVA _chem_comp.name "ethyl (4R)-4-({3-cyclopropyl-N-[(2E)-3-(4-ethynylphenyl)prop-2-enoyl]-L-alanyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.595 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MAW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVA C10 C1 C 0 1 N N N -10.003 -9.682 38.445 3.783 3.660 -0.790 C10 YVA 1 YVA C13 C2 C 0 1 N N N -11.213 -14.243 40.130 4.551 0.234 0.471 C13 YVA 2 YVA C15 C3 C 0 1 N N N -12.625 -16.332 39.699 5.926 -1.671 -0.322 C15 YVA 3 YVA C20 C4 C 0 1 N N N -14.863 -16.835 39.910 7.495 -3.381 -0.866 C20 YVA 4 YVA C21 C5 C 0 1 N N N -15.145 -17.742 38.693 7.611 -4.612 -1.768 C21 YVA 5 YVA C22 C6 C 0 1 N N N -12.120 -9.163 37.403 4.476 5.571 0.334 C22 YVA 6 YVA C24 C7 C 0 1 N N N -13.609 -12.005 45.621 -0.876 -3.153 0.789 C24 YVA 7 YVA C26 C8 C 0 1 N N N -13.574 -13.097 46.691 -1.752 -3.859 -0.249 C26 YVA 8 YVA C28 C9 C 0 1 N N N -13.375 -6.590 43.460 -5.079 -0.650 0.892 C28 YVA 9 YVA C01 C10 C 0 1 N N N -13.142 -8.921 42.857 -2.643 -0.697 0.853 C01 YVA 10 YVA C04 C11 C 0 1 N N S -12.882 -11.318 43.396 -0.207 -0.746 0.816 C04 YVA 11 YVA C05 C12 C 0 1 N N N -13.601 -12.433 44.144 0.144 -2.135 0.278 C05 YVA 12 YVA C07 C13 C 0 1 N N R -11.518 -12.726 40.015 3.197 0.933 0.334 C07 YVA 13 YVA C08 C14 C 0 1 N N N -10.442 -11.946 39.307 3.200 2.217 1.166 C08 YVA 14 YVA C09 C15 C 0 1 N N S -11.015 -10.529 39.069 4.218 3.200 0.584 C09 YVA 15 YVA C14 C16 C 0 1 N N N -12.598 -14.890 40.150 4.593 -0.982 -0.457 C14 YVA 16 YVA C18 C17 C 0 1 N N N -12.853 -11.627 41.919 0.864 0.235 0.414 C18 YVA 17 YVA C23 C18 C 0 1 N N N -12.199 -10.542 38.095 4.259 4.497 1.423 C23 YVA 18 YVA C25 C19 C 0 1 N N N -12.288 -12.357 46.301 -0.632 -4.626 0.456 C25 YVA 19 YVA C27 C20 C 0 1 N N N -13.969 -7.636 42.944 -3.928 -0.270 0.298 C27 YVA 20 YVA C29 C21 C 0 1 Y N N -15.452 -2.532 43.763 -8.797 0.587 -0.713 C29 YVA 21 YVA C30 C22 C 0 1 Y N N -14.396 -2.768 42.683 -8.763 -0.214 0.431 C30 YVA 22 YVA C31 C23 C 0 1 Y N N -13.713 -4.130 42.587 -7.564 -0.614 0.950 C31 YVA 23 YVA C32 C24 C 0 1 Y N N -14.092 -5.239 43.569 -6.370 -0.221 0.335 C32 YVA 24 YVA C33 C25 C 0 1 Y N N -15.158 -5.019 44.629 -6.406 0.582 -0.812 C33 YVA 25 YVA C34 C26 C 0 1 Y N N -15.833 -3.653 44.723 -7.606 0.976 -1.332 C34 YVA 26 YVA C35 C27 C 0 1 N N N -16.162 -1.169 43.855 -10.055 1.006 -1.256 C35 YVA 27 YVA C36 C28 C 0 1 N N N -16.692 -0.106 43.921 -11.086 1.349 -1.701 C36 YVA 28 YVA N02 N1 N 0 1 N N N -13.663 -10.110 43.497 -1.494 -0.318 0.260 N02 YVA 29 YVA N06 N2 N 0 1 N N N -11.699 -12.353 41.431 2.137 0.043 0.814 N06 YVA 30 YVA N11 N3 N 0 1 N N N -10.710 -8.833 37.419 3.938 4.991 -0.902 N11 YVA 31 YVA O03 O1 O 0 1 N N N -12.086 -8.945 42.286 -2.612 -1.395 1.850 O03 YVA 32 YVA O12 O2 O 0 1 N N N -8.836 -9.664 38.682 3.361 2.934 -1.665 O12 YVA 33 YVA O16 O3 O 0 1 N N N -13.560 -17.140 40.344 6.190 -2.770 -1.047 O16 YVA 34 YVA O17 O4 O 0 1 N N N -11.902 -16.748 38.842 6.758 -1.235 0.438 O17 YVA 35 YVA O19 O5 O 0 1 N N N -13.698 -11.307 41.168 0.581 1.196 -0.269 O19 YVA 36 YVA H1 H1 H 0 1 N N N -10.629 -14.592 39.266 5.347 0.926 0.198 H1 YVA 37 YVA H131 H2 H 0 0 N N N -10.663 -14.464 41.057 4.690 -0.091 1.502 H131 YVA 38 YVA H201 H3 H 0 0 N N N -14.928 -15.776 39.618 7.615 -3.681 0.175 H201 YVA 39 YVA H202 H4 H 0 0 N N N -15.588 -17.039 40.712 8.272 -2.663 -1.129 H202 YVA 40 YVA H213 H5 H 0 0 N N N -16.158 -17.542 38.313 6.834 -5.329 -1.505 H213 YVA 41 YVA H212 H6 H 0 0 N N N -14.409 -17.534 37.902 7.491 -4.312 -2.809 H212 YVA 42 YVA H211 H7 H 0 0 N N N -15.069 -18.797 38.996 8.590 -5.070 -1.632 H211 YVA 43 YVA H221 H8 H 0 0 N N N -12.702 -8.414 37.960 3.940 6.486 0.586 H221 YVA 44 YVA H222 H9 H 0 0 N N N -12.494 -9.224 36.370 5.541 5.776 0.222 H222 YVA 45 YVA H241 H10 H 0 0 N N N -14.084 -11.046 45.876 -1.327 -2.923 1.755 H241 YVA 46 YVA H261 H11 H 0 0 N N N -14.035 -12.920 47.674 -2.778 -4.093 0.034 H261 YVA 47 YVA H262 H12 H 0 0 N N N -13.711 -14.151 46.407 -1.601 -3.596 -1.296 H262 YVA 48 YVA H281 H13 H 0 0 N N N -12.359 -6.680 43.816 -5.052 -1.269 1.776 H281 YVA 49 YVA H041 H14 H 0 0 N N N -11.863 -11.182 43.788 -0.276 -0.784 1.903 H041 YVA 50 YVA H051 H15 H 0 0 N N N -14.630 -12.544 43.771 1.140 -2.415 0.619 H051 YVA 51 YVA H052 H16 H 0 0 N N N -13.063 -13.385 44.023 0.126 -2.117 -0.812 H052 YVA 52 YVA H071 H17 H 0 0 N N N -12.469 -12.600 39.476 3.019 1.179 -0.713 H071 YVA 53 YVA H082 H18 H 0 0 N N N -10.196 -12.423 38.347 2.208 2.667 1.144 H082 YVA 54 YVA H081 H19 H 0 0 N N N -9.538 -11.891 39.932 3.470 1.982 2.196 H081 YVA 55 YVA H091 H20 H 0 0 N N N -11.336 -10.101 40.030 5.206 2.742 0.538 H091 YVA 56 YVA H142 H21 H 0 0 N N N -13.257 -14.311 39.487 3.797 -1.675 -0.184 H142 YVA 57 YVA H141 H22 H 0 0 N N N -12.983 -14.845 41.180 4.454 -0.657 -1.488 H141 YVA 58 YVA H231 H23 H 0 0 N N N -13.150 -10.656 38.636 5.090 4.484 2.128 H231 YVA 59 YVA H232 H24 H 0 0 N N N -12.095 -11.355 37.362 3.313 4.654 1.942 H232 YVA 60 YVA H252 H25 H 0 0 N N N -11.501 -12.880 45.737 0.256 -4.870 -0.127 H252 YVA 61 YVA H251 H26 H 0 0 N N N -11.826 -11.649 47.005 -0.921 -5.366 1.203 H251 YVA 62 YVA H271 H27 H 0 0 N N N -14.991 -7.594 42.597 -3.955 0.349 -0.586 H271 YVA 63 YVA H301 H28 H 0 0 N N N -14.135 -1.978 41.994 -9.684 -0.517 0.906 H301 YVA 64 YVA H311 H29 H 0 0 N N N -12.965 -4.309 41.829 -7.538 -1.233 1.835 H311 YVA 65 YVA H331 H30 H 0 0 N N N -15.434 -5.815 45.304 -5.485 0.887 -1.287 H331 YVA 66 YVA H341 H31 H 0 0 N N N -16.587 -3.479 45.476 -7.634 1.592 -2.219 H341 YVA 67 YVA H361 H32 H 0 0 N N N -17.164 0.841 43.980 -12.008 1.656 -2.099 H361 YVA 68 YVA H021 H33 H 0 0 N N N -14.532 -10.094 43.991 -1.518 0.238 -0.534 H021 YVA 69 YVA H061 H34 H 0 0 N N N -10.990 -12.614 42.086 2.351 -0.684 1.419 H061 YVA 70 YVA H111 H35 H 0 0 N N N -10.272 -8.147 36.838 3.717 5.503 -1.696 H111 YVA 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVA C22 N11 SING N N 1 YVA C22 C23 SING N N 2 YVA N11 C10 SING N N 3 YVA C23 C09 SING N N 4 YVA C10 O12 DOUB N N 5 YVA C10 C09 SING N N 6 YVA C21 C20 SING N N 7 YVA O17 C15 DOUB N N 8 YVA C09 C08 SING N N 9 YVA C08 C07 SING N N 10 YVA C15 C14 SING N N 11 YVA C15 O16 SING N N 12 YVA C20 O16 SING N N 13 YVA C07 C13 SING N N 14 YVA C07 N06 SING N N 15 YVA C13 C14 SING N N 16 YVA O19 C18 DOUB N N 17 YVA N06 C18 SING N N 18 YVA C18 C04 SING N N 19 YVA O03 C01 DOUB N N 20 YVA C31 C30 DOUB Y N 21 YVA C31 C32 SING Y N 22 YVA C30 C29 SING Y N 23 YVA C01 C27 SING N N 24 YVA C01 N02 SING N N 25 YVA C27 C28 DOUB N E 26 YVA C04 N02 SING N N 27 YVA C04 C05 SING N N 28 YVA C28 C32 SING N N 29 YVA C32 C33 DOUB Y N 30 YVA C29 C35 SING N N 31 YVA C29 C34 DOUB Y N 32 YVA C35 C36 TRIP N N 33 YVA C05 C24 SING N N 34 YVA C33 C34 SING Y N 35 YVA C24 C25 SING N N 36 YVA C24 C26 SING N N 37 YVA C25 C26 SING N N 38 YVA C13 H1 SING N N 39 YVA C13 H131 SING N N 40 YVA C20 H201 SING N N 41 YVA C20 H202 SING N N 42 YVA C21 H213 SING N N 43 YVA C21 H212 SING N N 44 YVA C21 H211 SING N N 45 YVA C22 H221 SING N N 46 YVA C22 H222 SING N N 47 YVA C24 H241 SING N N 48 YVA C26 H261 SING N N 49 YVA C26 H262 SING N N 50 YVA C28 H281 SING N N 51 YVA C04 H041 SING N N 52 YVA C05 H051 SING N N 53 YVA C05 H052 SING N N 54 YVA C07 H071 SING N N 55 YVA C08 H082 SING N N 56 YVA C08 H081 SING N N 57 YVA C09 H091 SING N N 58 YVA C14 H142 SING N N 59 YVA C14 H141 SING N N 60 YVA C23 H231 SING N N 61 YVA C23 H232 SING N N 62 YVA C25 H252 SING N N 63 YVA C25 H251 SING N N 64 YVA C27 H271 SING N N 65 YVA C30 H301 SING N N 66 YVA C31 H311 SING N N 67 YVA C33 H331 SING N N 68 YVA C34 H341 SING N N 69 YVA C36 H361 SING N N 70 YVA N02 H021 SING N N 71 YVA N06 H061 SING N N 72 YVA N11 H111 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVA SMILES ACDLabs 12.01 "C#Cc1ccc(cc1)/C=C/C(=O)NC(CC1CC1)C(=O)NC(CC1CCNC1=O)CCC(=O)OCC" YVA InChI InChI 1.03 "InChI=1S/C28H35N3O5/c1-3-19-5-7-20(8-6-19)11-13-25(32)31-24(17-21-9-10-21)28(35)30-23(12-14-26(33)36-4-2)18-22-15-16-29-27(22)34/h1,5-8,11,13,21-24H,4,9-10,12,14-18H2,2H3,(H,29,34)(H,30,35)(H,31,32)/b13-11+/t22-,23+,24-/m0/s1" YVA InChIKey InChI 1.03 JMWBRPAKKKBHFQ-NQRMBFEXSA-N YVA SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)\C=C\c3ccc(cc3)C#C" YVA SMILES CACTVS 3.385 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)NC(=O)C=Cc3ccc(cc3)C#C" YVA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)/C=C/c3ccc(cc3)C#C" YVA SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(CC2CC2)NC(=O)C=Cc3ccc(cc3)C#C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YVA "SYSTEMATIC NAME" ACDLabs 12.01 "ethyl (4R)-4-({3-cyclopropyl-N-[(2E)-3-(4-ethynylphenyl)prop-2-enoyl]-L-alanyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate" YVA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (4~{R})-4-[[(2~{S})-3-cyclopropyl-2-[[(~{E})-3-(4-ethynylphenyl)prop-2-enoyl]amino]propanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVA "Create component" 2021-04-01 RCSB YVA "Initial release" 2022-10-12 RCSB #