data_YVC # _chem_comp.id YVC _chem_comp.name "7-[(1~{S})-1-[5-[(2-azanylethanoylamino)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 F N4 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 546.568 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PG8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVC C37 C1 C 0 1 N N N N N N -25.735 -11.483 13.769 -3.886 -1.308 -0.640 C37 YVC 1 YVC C34 C2 C 0 1 N N N N N N -30.790 -12.371 17.470 -9.210 1.882 -2.189 C34 YVC 2 YVC O33 O1 O 0 1 N N N N N N -30.856 -13.880 15.543 -9.182 0.936 -0.027 O33 YVC 3 YVC N31 N1 N 0 1 N N N N N N -28.779 -13.244 16.426 -7.184 1.175 -0.960 N31 YVC 4 YVC C28 C3 C 0 1 N N N N N N -25.525 -13.286 15.243 -4.281 -0.013 1.204 C28 YVC 5 YVC C30 C4 C 0 1 N N N N N N -27.995 -14.021 15.460 -6.518 0.607 0.215 C30 YVC 6 YVC C29 C5 C 0 1 N N N N N N -26.899 -13.095 14.906 -5.006 0.582 -0.018 C29 YVC 7 YVC C15 C6 C 0 1 N N N N N N -19.705 -12.242 4.590 6.876 1.461 -0.555 C15 YVC 8 YVC C01 C7 C 0 1 N N N N N N -22.591 -12.308 15.678 -3.411 -3.528 1.412 C01 YVC 9 YVC C02 C8 C 0 1 N N S N N N -23.417 -11.982 14.469 -2.778 -2.135 1.438 C02 YVC 10 YVC C03 C9 C 0 1 Y N N N N N -22.851 -12.827 13.307 -1.401 -2.198 0.829 C03 YVC 11 YVC C04 C10 C 0 1 Y N N N N N -22.537 -12.136 12.127 -0.500 -1.155 1.032 C04 YVC 12 YVC C06 C11 C 0 1 Y N N N N N -22.269 -10.613 10.596 0.603 0.728 1.615 C06 YVC 13 YVC C07 C12 C 0 1 N N N N N N -22.456 -9.307 9.969 0.881 2.033 2.219 C07 YVC 14 YVC C10 C13 C 0 1 Y N N N N N -21.808 -11.793 10.024 1.488 -0.007 0.846 C10 YVC 15 YVC C11 C14 C 0 1 Y N N N N N -21.252 -11.955 8.641 2.872 0.370 0.485 C11 YVC 16 YVC C12 C15 C 0 1 Y N N N N N -21.581 -13.044 7.860 3.848 0.489 1.476 C12 YVC 17 YVC C13 C16 C 0 1 Y N N N N N -21.071 -13.130 6.561 5.137 0.841 1.134 C13 YVC 18 YVC C14 C17 C 0 1 Y N N N N N -20.247 -12.136 6.030 5.465 1.077 -0.189 C14 YVC 19 YVC C17 C18 C 0 1 N N N N N N -20.739 -9.730 3.814 9.469 0.653 -1.306 C17 YVC 20 YVC C20 C19 C 0 1 Y N N N N N -19.926 -11.058 6.844 4.503 0.961 -1.179 C20 YVC 21 YVC C22 C20 C 0 1 Y N N N N N -20.425 -10.977 8.126 3.209 0.604 -0.849 C22 YVC 22 YVC C23 C21 C 0 1 Y N N N N N -21.980 -12.758 11.009 0.783 -1.235 0.460 C23 YVC 23 YVC C24 C22 C 0 1 Y N N N N N -21.727 -14.144 11.053 1.139 -2.351 -0.301 C24 YVC 24 YVC C25 C23 C 0 1 Y N N N N N -22.042 -14.851 12.219 0.239 -3.362 -0.487 C25 YVC 25 YVC C26 C24 C 0 1 Y N N N N N -22.605 -14.195 13.321 -1.028 -3.289 0.076 C26 YVC 26 YVC C32 C25 C 0 1 N N N N N N -30.222 -13.267 16.372 -8.526 1.297 -0.981 C32 YVC 27 YVC F21 F1 F 0 1 N N N N N N -19.142 -10.000 6.447 4.830 1.193 -2.469 F21 YVC 28 YVC N05 N2 N 0 1 Y N N N N N -22.669 -10.815 11.856 -0.584 0.032 1.720 N05 YVC 29 YVC N27 N3 N 0 1 N N N N N N -24.823 -12.242 14.564 -3.611 -1.207 0.668 N27 YVC 30 YVC N35 N4 N 0 1 N N N N N N -29.874 -12.322 18.618 -10.662 1.906 -1.965 N35 YVC 31 YVC O08 O2 O 0 1 N N N N N N -22.311 -8.276 10.716 -0.067 2.653 2.951 O08 YVC 32 YVC O09 O3 O 0 1 N N N N N N -23.008 -9.309 8.820 1.967 2.557 2.062 O09 YVC 33 YVC O18 O4 O 0 1 N N N N N N -22.209 -12.022 3.612 7.957 -0.785 0.305 O18 YVC 34 YVC O19 O5 O 0 1 N N N N N N -20.374 -11.683 2.004 7.310 -0.662 -2.056 O19 YVC 35 YVC O36 O6 O 0 1 N N N N N N -27.032 -11.995 14.030 -4.672 -0.331 -1.104 O36 YVC 36 YVC O38 O7 O 0 1 N N N N N N -25.457 -10.609 13.023 -3.456 -2.203 -1.340 O38 YVC 37 YVC S16 S1 S 0 1 N N N N N N -20.841 -11.474 3.361 7.841 -0.036 -0.897 S16 YVC 38 YVC H342 H1 H 0 0 N N N N N N -30.928 -11.354 17.073 -8.851 2.898 -2.355 H342 YVC 39 YVC H341 H2 H 0 0 N N N N N N -31.761 -12.771 17.798 -8.988 1.271 -3.064 H341 YVC 40 YVC H311 H3 H 0 0 N N N N N N -28.314 -12.698 17.123 -6.659 1.464 -1.723 H311 YVC 41 YVC H1 H4 H 0 1 N N N N N N -25.177 -14.271 14.899 -3.549 0.694 1.596 H1 YVC 42 YVC H281 H5 H 0 0 N N N N N N -25.380 -13.204 16.330 -4.997 -0.288 1.978 H281 YVC 43 YVC H301 H6 H 0 0 N N N N N N -28.643 -14.368 14.642 -6.740 1.218 1.090 H301 YVC 44 YVC H302 H7 H 0 0 N N N N N N -27.538 -14.889 15.958 -6.877 -0.409 0.380 H302 YVC 45 YVC H2 H8 H 0 1 N N N N N N -27.022 -12.426 15.771 -4.636 1.585 -0.232 H2 YVC 46 YVC H151 H9 H 0 0 N N N N N N -19.576 -13.305 4.337 6.861 2.095 -1.442 H151 YVC 47 YVC H152 H10 H 0 0 N N N N N N -18.732 -11.732 4.539 7.330 2.006 0.273 H152 YVC 48 YVC H013 H11 H 0 0 N N N N N N -22.956 -11.729 16.539 -2.792 -4.219 1.985 H013 YVC 49 YVC H012 H12 H 0 0 N N N N N N -22.672 -13.383 15.899 -4.407 -3.483 1.853 H012 YVC 50 YVC H011 H13 H 0 0 N N N N N N -21.539 -12.052 15.483 -3.484 -3.875 0.382 H011 YVC 51 YVC H021 H14 H 0 0 N N N N N N -23.261 -10.922 14.220 -2.705 -1.788 2.468 H021 YVC 52 YVC H121 H15 H 0 0 N N N N N N -22.224 -13.820 8.247 3.593 0.306 2.509 H121 YVC 53 YVC H131 H16 H 0 0 N N N N N N -21.321 -13.987 5.953 5.892 0.933 1.901 H131 YVC 54 YVC H171 H17 H 0 0 N N N N N N -21.098 -9.597 4.845 9.378 1.310 -2.171 H171 YVC 55 YVC H172 H18 H 0 0 N N N N N N -19.694 -9.393 3.743 9.847 1.222 -0.457 H172 YVC 56 YVC H173 H19 H 0 0 N N N N N N -21.363 -9.136 3.129 10.159 -0.158 -1.537 H173 YVC 57 YVC H221 H20 H 0 0 N N N N N N -20.163 -10.129 8.742 2.459 0.513 -1.621 H221 YVC 58 YVC H241 H21 H 0 0 N N N N N N -21.298 -14.651 10.202 2.124 -2.415 -0.741 H241 YVC 59 YVC H251 H22 H 0 0 N N N N N N -21.849 -15.912 12.270 0.515 -4.224 -1.075 H251 YVC 60 YVC H261 H23 H 0 0 N N N N N N -22.854 -14.766 14.203 -1.728 -4.097 -0.076 H261 YVC 61 YVC H051 H24 H 0 0 N N N N N N -23.006 -10.115 12.486 -1.365 0.337 2.208 H051 YVC 62 YVC H352 H25 H 0 0 N N N N N N -30.259 -11.732 19.328 -10.890 2.413 -1.123 H352 YVC 63 YVC H3 H26 H 0 1 N N N N N N -29.748 -13.244 18.983 -11.144 2.294 -2.762 H3 YVC 64 YVC H4 H28 H 0 1 N N N N N N -22.678 -7.515 10.281 0.209 3.508 3.309 H4 YVC 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVC O19 S16 DOUB N N 1 YVC S16 O18 DOUB N N 2 YVC S16 C17 SING N N 3 YVC S16 C15 SING N N 4 YVC C15 C14 SING N N 5 YVC C14 C13 DOUB Y N 6 YVC C14 C20 SING Y N 7 YVC F21 C20 SING N N 8 YVC C13 C12 SING Y N 9 YVC C20 C22 DOUB Y N 10 YVC C12 C11 DOUB Y N 11 YVC C22 C11 SING Y N 12 YVC C11 C10 SING N N 13 YVC O09 C07 DOUB N N 14 YVC C07 C06 SING N N 15 YVC C07 O08 SING N N 16 YVC C10 C06 DOUB Y N 17 YVC C10 C23 SING Y N 18 YVC C06 N05 SING Y N 19 YVC C23 C24 DOUB Y N 20 YVC C23 C04 SING Y N 21 YVC C24 C25 SING Y N 22 YVC N05 C04 SING Y N 23 YVC C04 C03 DOUB Y N 24 YVC C25 C26 DOUB Y N 25 YVC O38 C37 DOUB N N 26 YVC C03 C26 SING Y N 27 YVC C03 C02 SING N N 28 YVC C37 O36 SING N N 29 YVC C37 N27 SING N N 30 YVC O36 C29 SING N N 31 YVC C02 N27 SING N N 32 YVC C02 C01 SING N N 33 YVC N27 C28 SING N N 34 YVC C29 C28 SING N N 35 YVC C29 C30 SING N N 36 YVC C30 N31 SING N N 37 YVC O33 C32 DOUB N N 38 YVC C32 N31 SING N N 39 YVC C32 C34 SING N N 40 YVC C34 N35 SING N N 41 YVC C34 H342 SING N N 42 YVC C34 H341 SING N N 43 YVC N31 H311 SING N N 44 YVC C28 H1 SING N N 45 YVC C28 H281 SING N N 46 YVC C30 H301 SING N N 47 YVC C30 H302 SING N N 48 YVC C29 H2 SING N N 49 YVC C15 H151 SING N N 50 YVC C15 H152 SING N N 51 YVC C01 H013 SING N N 52 YVC C01 H012 SING N N 53 YVC C01 H011 SING N N 54 YVC C02 H021 SING N N 55 YVC C12 H121 SING N N 56 YVC C13 H131 SING N N 57 YVC C17 H171 SING N N 58 YVC C17 H172 SING N N 59 YVC C17 H173 SING N N 60 YVC C22 H221 SING N N 61 YVC C24 H241 SING N N 62 YVC C25 H251 SING N N 63 YVC C26 H261 SING N N 64 YVC N05 H051 SING N N 65 YVC N35 H352 SING N N 66 YVC N35 H3 SING N N 67 YVC O08 H4 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVC InChI InChI 1.06 "InChI=1S/C25H27FN4O7S/c1-13(30-11-16(37-25(30)34)10-28-20(31)9-27)17-4-3-5-18-21(23(24(32)33)29-22(17)18)14-6-7-15(19(26)8-14)12-38(2,35)36/h3-8,13,16,29H,9-12,27H2,1-2H3,(H,28,31)(H,32,33)/t13-,16-/m0/s1" YVC InChIKey InChI 1.06 JYIGXYMZIQXLDD-BBRMVZONSA-N YVC SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@H](CNC(=O)CN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YVC SMILES CACTVS 3.385 "C[CH](N1C[CH](CNC(=O)CN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YVC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CNC(=O)CN" YVC SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CNC(=O)CN" # _pdbx_chem_comp_identifier.comp_id YVC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[5-[(2-azanylethanoylamino)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVC "Create component" 2023-06-21 PDBE YVC "Initial release" 2024-07-10 RCSB #