data_YVJ # _chem_comp.id YVJ _chem_comp.name "4-fluoro-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H37 F N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.626 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVJ C10 C1 C 0 1 N N N -8.119 -10.863 17.933 -4.100 -3.781 -0.337 C10 YVJ 1 YVJ C13 C2 C 0 1 N N N -9.813 -15.351 19.519 -4.648 -0.141 0.271 C13 YVJ 2 YVJ C15 C3 C 0 1 N N N -11.112 -17.494 18.859 -5.764 1.704 -0.954 C15 YVJ 3 YVJ C20 C4 C 0 1 N N N -13.209 -18.736 18.283 -7.111 3.415 -1.922 C20 YVJ 4 YVJ C21 C5 C 0 1 N N N -12.873 -18.564 16.780 -7.031 4.480 -3.017 C21 YVJ 5 YVJ C22 C6 C 0 1 N N N -9.839 -10.487 16.319 -5.065 -5.414 1.004 C22 YVJ 6 YVJ C24 C7 C 0 1 Y N N -12.926 -11.839 27.175 2.931 4.620 1.381 C24 YVJ 7 YVJ C26 C8 C 0 1 Y N N -14.168 -12.088 24.863 2.232 2.841 -0.061 C26 YVJ 8 YVJ C28 C9 C 0 1 Y N N -11.764 -13.099 25.135 0.750 3.663 1.630 C28 YVJ 9 YVJ C01 C10 C 0 1 N N N -12.361 -9.869 21.473 2.541 0.273 1.227 C01 YVJ 10 YVJ C04 C11 C 0 1 N N S -12.248 -12.225 22.118 0.133 0.506 0.935 C04 YVJ 11 YVJ C05 C12 C 0 1 N N N -13.027 -13.299 22.805 -0.038 1.807 0.148 C05 YVJ 12 YVJ C07 C13 C 0 1 N N R -10.088 -13.845 19.302 -3.360 -0.958 0.387 C07 YVJ 13 YVJ C08 C14 C 0 1 N N N -8.848 -13.066 18.814 -3.556 -2.078 1.411 C08 YVJ 14 YVJ C09 C15 C 0 1 N N S -9.233 -11.667 18.347 -4.608 -3.062 0.893 C09 YVJ 15 YVJ C14 C16 C 0 1 N N N -11.144 -16.136 19.657 -4.495 0.900 -0.840 C14 YVJ 16 YVJ C18 C17 C 0 1 N N N -11.880 -12.740 20.717 -0.987 -0.441 0.590 C18 YVJ 17 YVJ C23 C18 C 0 1 N N N -10.273 -11.629 17.258 -4.844 -4.192 1.923 C23 YVJ 18 YVJ C25 C19 C 0 1 Y N N -14.125 -11.596 26.304 3.193 3.751 0.338 C25 YVJ 19 YVJ C27 C20 C 0 1 Y N N -12.994 -12.853 24.290 1.010 2.799 0.583 C27 YVJ 20 YVJ C29 C21 C 0 1 Y N N -11.725 -12.607 26.594 1.711 4.574 2.029 C29 YVJ 21 YVJ C30 C22 C 0 1 N N R -13.250 -8.660 21.150 3.861 -0.359 0.871 C30 YVJ 22 YVJ C32 C23 C 0 1 N N N -14.105 -8.230 22.317 4.410 0.287 -0.402 C32 YVJ 23 YVJ C33 C24 C 0 1 Y N N -11.769 -6.725 25.924 7.974 -1.739 -1.605 C33 YVJ 24 YVJ C34 C25 C 0 1 Y N N -12.171 -8.188 25.828 8.049 -0.655 -0.746 C34 YVJ 25 YVJ C35 C26 C 0 1 Y N N -12.944 -8.669 24.623 6.896 -0.001 -0.357 C35 YVJ 26 YVJ C36 C27 C 0 1 Y N N -13.327 -7.723 23.523 5.667 -0.427 -0.827 C36 YVJ 27 YVJ C37 C28 C 0 1 Y N N -12.902 -6.269 23.614 5.591 -1.509 -1.685 C37 YVJ 28 YVJ C38 C29 C 0 1 Y N N -12.177 -5.769 24.831 6.744 -2.161 -2.079 C38 YVJ 29 YVJ F39 F1 F 0 1 N N N -11.104 -6.264 26.988 9.101 -2.379 -1.985 F39 YVJ 30 YVJ N02 N1 N 0 1 N N N -13.036 -11.044 21.905 1.417 -0.109 0.590 N02 YVJ 31 YVJ N06 N2 N 0 1 N N N -10.556 -13.290 20.561 -2.266 -0.085 0.822 N06 YVJ 32 YVJ N11 N3 N 0 1 N N N -8.472 -10.160 16.681 -4.369 -5.095 -0.248 N11 YVJ 33 YVJ N31 N4 N 0 1 N N N -12.394 -7.588 20.766 4.813 -0.157 1.972 N31 YVJ 34 YVJ O03 O1 O 0 1 N N N -11.184 -9.837 21.337 2.489 1.127 2.087 O03 YVJ 35 YVJ O12 O2 O 0 1 N N N -7.016 -10.778 18.461 -3.537 -3.249 -1.270 O12 YVJ 36 YVJ O16 O3 O 0 1 N N N -12.091 -18.520 19.161 -5.859 2.682 -1.869 O16 YVJ 37 YVJ O17 O4 O 0 1 N N N -10.276 -17.734 18.025 -6.696 1.469 -0.222 O17 YVJ 38 YVJ O19 O5 O 0 1 N N N -12.615 -12.668 19.770 -0.738 -1.523 0.103 O19 YVJ 39 YVJ H1 H1 H 0 1 N N N -9.250 -15.743 18.659 -5.479 -0.805 0.034 H1 YVJ 40 YVJ H131 H2 H 0 0 N N N -9.220 -15.481 20.436 -4.845 0.363 1.217 H131 YVJ 41 YVJ H202 H3 H 0 0 N N N -13.999 -18.017 18.545 -7.292 3.895 -0.960 H202 YVJ 42 YVJ H201 H4 H 0 0 N N N -13.579 -19.760 18.440 -7.926 2.726 -2.143 H201 YVJ 43 YVJ H211 H5 H 0 0 N N N -13.776 -18.745 16.179 -7.971 5.031 -3.057 H211 YVJ 44 YVJ H213 H6 H 0 0 N N N -12.512 -17.541 16.600 -6.216 5.169 -2.796 H213 YVJ 45 YVJ H212 H7 H 0 0 N N N -12.092 -19.284 16.494 -6.850 4.000 -3.979 H212 YVJ 46 YVJ H221 H8 H 0 0 N N N -10.490 -9.611 16.458 -4.641 -6.312 1.453 H221 YVJ 47 YVJ H222 H9 H 0 0 N N N -9.887 -10.817 15.271 -6.131 -5.551 0.818 H222 YVJ 48 YVJ H241 H10 H 0 0 N N N -12.907 -11.480 28.194 3.682 5.331 1.692 H241 YVJ 49 YVJ H261 H11 H 0 0 N N N -15.035 -11.891 24.251 2.436 2.162 -0.876 H261 YVJ 50 YVJ H281 H12 H 0 0 N N N -10.915 -13.619 24.716 -0.203 3.628 2.136 H281 YVJ 51 YVJ H041 H13 H 0 0 N N N -11.332 -11.996 22.682 0.110 0.723 2.003 H041 YVJ 52 YVJ H051 H14 H 0 0 N N N -14.059 -13.343 22.427 0.074 1.604 -0.917 H051 YVJ 53 YVJ H052 H15 H 0 0 N N N -12.547 -14.280 22.676 -1.029 2.219 0.337 H052 YVJ 54 YVJ H071 H16 H 0 0 N N N -10.878 -13.746 18.543 -3.115 -1.390 -0.583 H071 YVJ 55 YVJ H082 H17 H 0 0 N N N -8.387 -13.611 17.977 -2.612 -2.601 1.562 H082 YVJ 56 YVJ H081 H18 H 0 0 N N N -8.126 -12.984 19.640 -3.891 -1.652 2.356 H081 YVJ 57 YVJ H091 H19 H 0 0 N N N -9.683 -11.169 19.219 -5.540 -2.543 0.674 H091 YVJ 58 YVJ H141 H20 H 0 0 N N N -11.965 -15.515 19.269 -3.664 1.564 -0.602 H141 YVJ 59 YVJ H142 H21 H 0 0 N N N -11.320 -16.353 20.721 -4.298 0.395 -1.785 H142 YVJ 60 YVJ H232 H22 H 0 0 N N N -11.267 -11.422 17.682 -5.728 -3.994 2.528 H232 YVJ 61 YVJ H231 H23 H 0 0 N N N -10.297 -12.585 16.715 -3.965 -4.332 2.552 H231 YVJ 62 YVJ H251 H24 H 0 0 N N N -14.973 -11.062 26.707 4.148 3.784 -0.166 H251 YVJ 63 YVJ H291 H25 H 0 0 N N N -10.858 -12.800 27.208 1.508 5.249 2.847 H291 YVJ 64 YVJ H301 H26 H 0 0 N N N -13.909 -8.929 20.311 3.720 -1.427 0.705 H301 YVJ 65 YVJ H321 H27 H 0 0 N N N -14.771 -7.424 21.975 3.666 0.215 -1.196 H321 YVJ 66 YVJ H322 H28 H 0 0 N N N -14.708 -9.093 22.636 4.635 1.336 -0.210 H322 YVJ 67 YVJ H341 H29 H 0 0 N N N -11.906 -8.878 26.615 9.009 -0.322 -0.379 H341 YVJ 68 YVJ H351 H30 H 0 0 N N N -13.225 -9.709 24.552 6.954 0.844 0.313 H351 YVJ 69 YVJ H371 H31 H 0 0 N N N -13.121 -5.592 22.802 4.631 -1.841 -2.050 H371 YVJ 70 YVJ H381 H32 H 0 0 N N N -11.946 -4.718 24.924 6.684 -3.006 -2.749 H381 YVJ 71 YVJ H021 H33 H 0 0 N N N -14.025 -11.047 22.055 1.458 -0.791 -0.098 H021 YVJ 72 YVJ H061 H34 H 0 0 N N N -9.938 -13.289 21.347 -2.463 0.748 1.278 H061 YVJ 73 YVJ H111 H35 H 0 0 N N N -7.865 -9.555 16.165 -4.129 -5.750 -0.923 H111 YVJ 74 YVJ H312 H36 H 0 0 N N N -12.945 -6.782 20.548 5.686 -0.628 1.786 H312 YVJ 75 YVJ H2 H37 H 0 1 N N N -11.772 -7.373 21.519 4.962 0.825 2.146 H2 YVJ 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVJ C22 N11 SING N N 1 YVJ C22 C23 SING N N 2 YVJ N11 C10 SING N N 3 YVJ C21 C20 SING N N 4 YVJ C23 C09 SING N N 5 YVJ C10 C09 SING N N 6 YVJ C10 O12 DOUB N N 7 YVJ O17 C15 DOUB N N 8 YVJ C20 O16 SING N N 9 YVJ C09 C08 SING N N 10 YVJ C08 C07 SING N N 11 YVJ C15 O16 SING N N 12 YVJ C15 C14 SING N N 13 YVJ C07 C13 SING N N 14 YVJ C07 N06 SING N N 15 YVJ C13 C14 SING N N 16 YVJ O19 C18 DOUB N N 17 YVJ N06 C18 SING N N 18 YVJ C18 C04 SING N N 19 YVJ N31 C30 SING N N 20 YVJ C30 C01 SING N N 21 YVJ C30 C32 SING N N 22 YVJ O03 C01 DOUB N N 23 YVJ C01 N02 SING N N 24 YVJ N02 C04 SING N N 25 YVJ C04 C05 SING N N 26 YVJ C32 C36 SING N N 27 YVJ C05 C27 SING N N 28 YVJ C36 C37 DOUB Y N 29 YVJ C36 C35 SING Y N 30 YVJ C37 C38 SING Y N 31 YVJ C27 C26 DOUB Y N 32 YVJ C27 C28 SING Y N 33 YVJ C35 C34 DOUB Y N 34 YVJ C38 C33 DOUB Y N 35 YVJ C26 C25 SING Y N 36 YVJ C28 C29 DOUB Y N 37 YVJ C34 C33 SING Y N 38 YVJ C33 F39 SING N N 39 YVJ C25 C24 DOUB Y N 40 YVJ C29 C24 SING Y N 41 YVJ C13 H1 SING N N 42 YVJ C13 H131 SING N N 43 YVJ C20 H202 SING N N 44 YVJ C20 H201 SING N N 45 YVJ C21 H211 SING N N 46 YVJ C21 H213 SING N N 47 YVJ C21 H212 SING N N 48 YVJ C22 H221 SING N N 49 YVJ C22 H222 SING N N 50 YVJ C24 H241 SING N N 51 YVJ C26 H261 SING N N 52 YVJ C28 H281 SING N N 53 YVJ C04 H041 SING N N 54 YVJ C05 H051 SING N N 55 YVJ C05 H052 SING N N 56 YVJ C07 H071 SING N N 57 YVJ C08 H082 SING N N 58 YVJ C08 H081 SING N N 59 YVJ C09 H091 SING N N 60 YVJ C14 H141 SING N N 61 YVJ C14 H142 SING N N 62 YVJ C23 H232 SING N N 63 YVJ C23 H231 SING N N 64 YVJ C25 H251 SING N N 65 YVJ C29 H291 SING N N 66 YVJ C30 H301 SING N N 67 YVJ C32 H321 SING N N 68 YVJ C32 H322 SING N N 69 YVJ C34 H341 SING N N 70 YVJ C35 H351 SING N N 71 YVJ C37 H371 SING N N 72 YVJ C38 H381 SING N N 73 YVJ N02 H021 SING N N 74 YVJ N06 H061 SING N N 75 YVJ N11 H111 SING N N 76 YVJ N31 H312 SING N N 77 YVJ N31 H2 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVJ SMILES ACDLabs 12.01 "Fc1ccc(cc1)CC(N)C(=O)NC(Cc1ccccc1)C(=O)NC(CC1CCNC1=O)CCC(=O)OCC" YVJ InChI InChI 1.03 "InChI=1S/C29H37FN4O5/c1-2-39-26(35)13-12-23(18-21-14-15-32-27(21)36)33-29(38)25(17-19-6-4-3-5-7-19)34-28(37)24(31)16-20-8-10-22(30)11-9-20/h3-11,21,23-25H,2,12-18,31H2,1H3,(H,32,36)(H,33,38)(H,34,37)/t21-,23+,24+,25-/m0/s1" YVJ InChIKey InChI 1.03 NURFMZSCLLICCV-QVQNZMNRSA-N YVJ SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](N)Cc3ccc(F)cc3" YVJ SMILES CACTVS 3.385 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](N)Cc3ccc(F)cc3" YVJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccc(cc3)F)N" YVJ SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(Cc3ccc(cc3)F)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YVJ "SYSTEMATIC NAME" ACDLabs 12.01 "4-fluoro-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide" YVJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (4~{R})-4-[[(2~{S})-2-[[(2~{R})-2-azanyl-3-(4-fluorophenyl)propanoyl]amino]-3-phenyl-propanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVJ "Create component" 2021-04-01 RCSB YVJ "Initial release" 2022-10-12 RCSB #