data_YVV # _chem_comp.id YVV _chem_comp.name "N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H44 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 632.746 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MB3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVV C10 C1 C 0 1 N N N 12.937 -17.734 -0.121 -5.390 3.845 0.174 C10 YVV 1 YVV C13 C2 C 0 1 N N N 12.645 -22.604 -1.126 -5.881 0.254 -0.704 C13 YVV 2 YVV C15 C3 C 0 1 N N N 12.569 -24.979 -0.090 -7.153 -1.640 0.266 C15 YVV 3 YVV C20 C4 C 0 1 N N N 13.376 -26.552 1.561 -8.621 -3.386 0.959 C20 YVV 4 YVV C21 C5 C 0 1 N N N 14.758 -27.205 1.733 -8.690 -4.506 1.998 C21 YVV 5 YVV C22 C6 C 0 1 N N N 14.220 -17.931 1.900 -4.910 5.443 -1.441 C22 YVV 6 YVV C24 C7 C 0 1 Y N N 19.771 -24.652 -6.275 1.655 -4.630 -1.127 C24 YVV 7 YVV C26 C8 C 0 1 Y N N 18.286 -22.737 -5.202 0.715 -3.035 0.391 C26 YVV 8 YVV C28 C9 C 0 1 Y N N 18.579 -25.062 -3.956 -0.417 -3.554 -1.654 C28 YVV 9 YVV C01 C10 C 0 1 N N N 18.036 -19.500 -2.435 1.334 -0.338 -0.437 C01 YVV 10 YVV C04 C11 C 0 1 N N S 16.949 -21.672 -2.809 -1.088 -0.486 -0.660 C04 YVV 11 YVV C05 C12 C 0 1 N N N 17.104 -23.190 -2.867 -1.443 -1.870 -0.112 C05 YVV 12 YVV C07 C13 C 0 1 N N R 13.509 -21.363 -0.845 -4.586 1.063 -0.607 C07 YVV 13 YVV C08 C14 C 0 1 N N N 12.801 -20.036 -0.892 -4.642 2.236 -1.588 C08 YVV 14 YVV C09 C15 C 0 1 N N S 13.771 -18.895 -0.279 -5.739 3.211 -1.154 C09 YVV 15 YVV C14 C16 C 0 1 N N N 13.427 -23.897 -0.794 -5.878 -0.843 0.362 C14 YVV 16 YVV C18 C17 C 0 1 N N N 15.957 -21.533 -1.628 -2.233 0.461 -0.411 C18 YVV 17 YVV C23 C18 C 0 1 N N N 14.145 -19.272 1.176 -5.820 4.405 -2.134 C23 YVV 18 YVV C25 C19 C 0 1 Y N N 19.184 -23.242 -6.336 1.718 -3.927 0.062 C25 YVV 19 YVV C27 C20 C 0 1 Y N N 17.996 -23.652 -4.015 -0.352 -2.847 -0.468 C27 YVV 20 YVV C29 C21 C 0 1 Y N N 19.473 -25.560 -5.089 0.589 -4.442 -1.986 C29 YVV 21 YVV C30 C22 C 0 1 N N R 19.273 -18.608 -2.181 2.570 0.175 0.257 C30 YVV 22 YVV C32 C23 C 0 1 N N N 19.999 -18.391 -3.490 2.567 -0.292 1.714 C32 YVV 23 YVV C33 C24 C 0 1 Y N N 24.093 -16.512 -2.526 5.884 1.445 3.771 C33 YVV 24 YVV C34 C25 C 0 1 Y N N 23.956 -18.031 -2.641 6.025 0.225 3.138 C34 YVV 25 YVV C35 C26 C 0 1 Y N N 22.589 -18.658 -2.963 4.952 -0.337 2.472 C35 YVV 26 YVV C36 C27 C 0 1 Y N N 21.383 -17.747 -3.166 3.737 0.321 2.439 C36 YVV 27 YVV C37 C28 C 0 1 Y N N 21.510 -16.232 -3.045 3.596 1.542 3.072 C37 YVV 28 YVV C38 C29 C 0 1 Y N N 22.876 -15.605 -2.732 4.667 2.101 3.743 C38 YVV 29 YVV C39 C30 C 0 1 N N N 19.182 -16.757 -0.395 4.927 0.326 -0.339 C39 YVV 30 YVV C40 C31 C 0 1 N N N 18.555 -15.401 0.003 6.153 -0.208 -1.036 C40 YVV 31 YVV C42 C32 C 0 1 N N N 19.309 -14.731 1.169 7.332 0.734 -0.786 C42 YVV 32 YVV C44 C33 C 0 1 N N N 21.108 -13.670 0.067 9.659 1.037 -1.276 C44 YVV 33 YVV C45 C34 C 0 1 N N N 22.643 -13.534 0.090 10.790 0.427 -1.993 C45 YVV 34 YVV C46 C35 C 0 1 N N N 23.820 -13.427 0.083 11.692 -0.060 -2.565 C46 YVV 35 YVV N02 N1 N 0 1 N N N 18.154 -20.960 -2.549 0.113 0.012 0.015 N02 YVV 36 YVV N06 N2 N 0 1 N N N 14.523 -21.454 -1.923 -3.447 0.204 -0.938 N06 YVV 37 YVV N11 N3 N 0 1 N N N 13.196 -17.131 1.252 -4.934 5.095 -0.015 N11 YVV 38 YVV N31 N4 N 0 1 N N N 18.774 -17.339 -1.681 3.761 -0.344 -0.420 N31 YVV 39 YVV O03 O1 O 0 1 N N N 16.963 -18.988 -2.536 1.438 -1.065 -1.402 O03 YVV 40 YVV O12 O2 O 0 1 N N N 12.175 -17.347 -0.954 -5.509 3.305 1.254 O12 YVV 41 YVV O16 O3 O 0 1 N N N 13.141 -26.245 0.201 -7.371 -2.662 1.109 O16 YVV 42 YVV O17 O4 O 0 1 N N N 11.424 -24.758 0.188 -7.979 -1.360 -0.569 O17 YVV 43 YVV O19 O5 O 0 1 N N N 16.361 -21.549 -0.504 -2.063 1.455 0.263 O19 YVV 44 YVV O41 O6 O 0 1 N N N 19.964 -17.288 0.319 4.992 1.358 0.294 O41 YVV 45 YVV O43 O7 O 0 1 N N N 20.690 -14.703 0.922 8.494 0.227 -1.447 O43 YVV 46 YVV H1 H1 H 0 1 N N N 11.737 -22.561 -0.506 -6.734 0.913 -0.545 H1 YVV 47 YVV H131 H2 H 0 0 N N N 12.363 -22.615 -2.189 -5.952 -0.200 -1.692 H131 YVV 48 YVV H201 H3 H 0 0 N N N 13.337 -25.626 2.154 -8.674 -3.815 -0.042 H201 YVV 49 YVV H202 H4 H 0 0 N N N 12.600 -27.247 1.915 -9.457 -2.701 1.106 H202 YVV 50 YVV H211 H5 H 0 0 N N N 14.925 -27.437 2.795 -9.628 -5.049 1.885 H211 YVV 51 YVV H212 H6 H 0 0 N N N 14.801 -28.133 1.144 -7.854 -5.190 1.851 H212 YVV 52 YVV H213 H7 H 0 0 N N N 15.537 -26.512 1.383 -8.637 -4.077 2.999 H213 YVV 53 YVV H222 H8 H 0 0 N N N 14.004 -18.051 2.972 -3.894 5.374 -1.829 H222 YVV 54 YVV H221 H9 H 0 0 N N N 15.212 -17.473 1.775 -5.303 6.449 -1.591 H221 YVV 55 YVV H241 H10 H 0 0 N N N 20.401 -25.006 -7.078 2.442 -5.324 -1.386 H241 YVV 56 YVV H261 H11 H 0 0 N N N 17.863 -21.744 -5.242 0.766 -2.482 1.317 H261 YVV 57 YVV H281 H12 H 0 0 N N N 18.360 -25.705 -3.116 -1.250 -3.407 -2.325 H281 YVV 58 YVV H041 H13 H 0 0 N N N 16.469 -21.314 -3.732 -0.900 -0.557 -1.731 H041 YVV 59 YVV H052 H14 H 0 0 N N N 16.108 -23.640 -2.993 -1.543 -1.817 0.972 H052 YVV 60 YVV H051 H15 H 0 0 N N N 17.545 -23.534 -1.920 -2.385 -2.203 -0.548 H051 YVV 61 YVV H071 H16 H 0 0 N N N 13.997 -21.482 0.134 -4.471 1.444 0.408 H071 YVV 62 YVV H082 H17 H 0 0 N N N 12.553 -19.788 -1.935 -3.681 2.750 -1.595 H082 YVV 63 YVV H081 H18 H 0 0 N N N 11.876 -20.091 -0.299 -4.863 1.863 -2.588 H081 YVV 64 YVV H091 H19 H 0 0 N N N 14.656 -18.735 -0.913 -6.700 2.700 -1.092 H091 YVV 65 YVV H142 H20 H 0 0 N N N 13.816 -24.318 -1.733 -5.024 -1.502 0.203 H142 YVV 66 YVV H141 H21 H 0 0 N N N 14.267 -23.635 -0.134 -5.807 -0.389 1.351 H141 YVV 67 YVV H232 H22 H 0 0 N N N 13.373 -19.915 1.624 -6.842 4.774 -2.215 H232 YVV 68 YVV H231 H23 H 0 0 N N N 15.116 -19.788 1.208 -5.426 4.133 -3.113 H231 YVV 69 YVV H251 H24 H 0 0 N N N 19.402 -22.602 -7.178 2.551 -4.075 0.733 H251 YVV 70 YVV H291 H25 H 0 0 N N N 19.893 -26.554 -5.050 0.543 -4.988 -2.916 H291 YVV 71 YVV H301 H26 H 0 0 N N N 19.938 -19.090 -1.450 2.579 1.264 0.224 H301 YVV 72 YVV H321 H27 H 0 0 N N N 19.415 -17.718 -4.135 1.639 0.019 2.193 H321 YVV 73 YVV H322 H28 H 0 0 N N N 20.145 -19.354 -4.001 2.648 -1.378 1.747 H322 YVV 74 YVV H331 H29 H 0 0 N N N 25.054 -16.076 -2.298 6.722 1.885 4.291 H331 YVV 75 YVV H341 H30 H 0 0 N N N 24.819 -18.663 -2.496 6.975 -0.290 3.164 H341 YVV 76 YVV H351 H31 H 0 0 N N N 22.485 -19.730 -3.044 5.063 -1.291 1.977 H351 YVV 77 YVV H371 H32 H 0 0 N N N 20.643 -15.603 -3.179 2.647 2.056 3.046 H371 YVV 78 YVV H381 H33 H 0 0 N N N 22.978 -14.532 -2.658 4.557 3.055 4.237 H381 YVV 79 YVV H402 H34 H 0 0 N N N 18.581 -14.730 -0.868 6.390 -1.198 -0.646 H402 YVV 80 YVV H401 H35 H 0 0 N N N 17.511 -15.569 0.306 5.962 -0.275 -2.107 H401 YVV 81 YVV H422 H36 H 0 0 N N N 18.944 -13.700 1.289 7.095 1.724 -1.176 H422 YVV 82 YVV H421 H37 H 0 0 N N N 19.120 -15.297 2.093 7.523 0.801 0.285 H421 YVV 83 YVV H442 H38 H 0 0 N N N 20.656 -12.723 0.397 9.898 1.111 -0.215 H442 YVV 84 YVV H441 H39 H 0 0 N N N 20.780 -13.895 -0.959 9.470 2.034 -1.676 H441 YVV 85 YVV H461 H40 H 0 0 N N N 24.876 -13.331 0.077 12.499 -0.495 -3.077 H461 YVV 86 YVV H021 H41 H 0 0 N N N 19.032 -21.428 -2.449 0.030 0.594 0.787 H021 YVV 87 YVV H061 H42 H 0 0 N N N 14.221 -21.462 -2.876 -3.566 -0.550 -1.536 H061 YVV 88 YVV H111 H43 H 0 0 N N N 12.742 -16.328 1.639 -4.656 5.690 0.698 H111 YVV 89 YVV H311 H44 H 0 0 N N N 18.118 -16.834 -2.242 3.709 -1.170 -0.927 H311 YVV 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVV C25 C24 DOUB Y N 1 YVV C25 C26 SING Y N 2 YVV C24 C29 SING Y N 3 YVV C26 C27 DOUB Y N 4 YVV C29 C28 DOUB Y N 5 YVV C27 C28 SING Y N 6 YVV C27 C05 SING N N 7 YVV C32 C36 SING N N 8 YVV C32 C30 SING N N 9 YVV C36 C37 DOUB Y N 10 YVV C36 C35 SING Y N 11 YVV C37 C38 SING Y N 12 YVV C35 C34 DOUB Y N 13 YVV C05 C04 SING N N 14 YVV C04 N02 SING N N 15 YVV C04 C18 SING N N 16 YVV C38 C33 DOUB Y N 17 YVV C34 C33 SING Y N 18 YVV N02 C01 SING N N 19 YVV O03 C01 DOUB N N 20 YVV C01 C30 SING N N 21 YVV C30 N31 SING N N 22 YVV N06 C18 SING N N 23 YVV N06 C07 SING N N 24 YVV N31 C39 SING N N 25 YVV C18 O19 DOUB N N 26 YVV C13 C07 SING N N 27 YVV C13 C14 SING N N 28 YVV O12 C10 DOUB N N 29 YVV C08 C07 SING N N 30 YVV C08 C09 SING N N 31 YVV C14 C15 SING N N 32 YVV C39 C40 SING N N 33 YVV C39 O41 DOUB N N 34 YVV C09 C10 SING N N 35 YVV C09 C23 SING N N 36 YVV C10 N11 SING N N 37 YVV C15 O17 DOUB N N 38 YVV C15 O16 SING N N 39 YVV C40 C42 SING N N 40 YVV C44 C45 SING N N 41 YVV C44 O43 SING N N 42 YVV C46 C45 TRIP N N 43 YVV O16 C20 SING N N 44 YVV O43 C42 SING N N 45 YVV C23 C22 SING N N 46 YVV N11 C22 SING N N 47 YVV C20 C21 SING N N 48 YVV C13 H1 SING N N 49 YVV C13 H131 SING N N 50 YVV C20 H201 SING N N 51 YVV C20 H202 SING N N 52 YVV C21 H211 SING N N 53 YVV C21 H212 SING N N 54 YVV C21 H213 SING N N 55 YVV C22 H222 SING N N 56 YVV C22 H221 SING N N 57 YVV C24 H241 SING N N 58 YVV C26 H261 SING N N 59 YVV C28 H281 SING N N 60 YVV C04 H041 SING N N 61 YVV C05 H052 SING N N 62 YVV C05 H051 SING N N 63 YVV C07 H071 SING N N 64 YVV C08 H082 SING N N 65 YVV C08 H081 SING N N 66 YVV C09 H091 SING N N 67 YVV C14 H142 SING N N 68 YVV C14 H141 SING N N 69 YVV C23 H232 SING N N 70 YVV C23 H231 SING N N 71 YVV C25 H251 SING N N 72 YVV C29 H291 SING N N 73 YVV C30 H301 SING N N 74 YVV C32 H321 SING N N 75 YVV C32 H322 SING N N 76 YVV C33 H331 SING N N 77 YVV C34 H341 SING N N 78 YVV C35 H351 SING N N 79 YVV C37 H371 SING N N 80 YVV C38 H381 SING N N 81 YVV C40 H402 SING N N 82 YVV C40 H401 SING N N 83 YVV C42 H422 SING N N 84 YVV C42 H421 SING N N 85 YVV C44 H442 SING N N 86 YVV C44 H441 SING N N 87 YVV C46 H461 SING N N 88 YVV N02 H021 SING N N 89 YVV N06 H061 SING N N 90 YVV N11 H111 SING N N 91 YVV N31 H311 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVV SMILES ACDLabs 12.01 "C#CCOCCC(=O)NC(Cc1ccccc1)C(=O)NC(Cc1ccccc1)C(=O)NC(CC1CCNC1=O)CCC(=O)OCC" YVV InChI InChI 1.03 "InChI=1S/C35H44N4O7/c1-3-20-45-21-18-31(40)38-29(22-25-11-7-5-8-12-25)35(44)39-30(23-26-13-9-6-10-14-26)34(43)37-28(15-16-32(41)46-4-2)24-27-17-19-36-33(27)42/h1,5-14,27-30H,4,15-24H2,2H3,(H,36,42)(H,37,43)(H,38,40)(H,39,44)/t27-,28+,29+,30-/m0/s1" YVV InChIKey InChI 1.03 DFVBMNVNJFHZTI-KJHMZRPRSA-N YVV SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccccc3)NC(=O)CCOCC#C" YVV SMILES CACTVS 3.385 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](Cc3ccccc3)NC(=O)CCOCC#C" YVV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccccc3)NC(=O)CCOCC#C" YVV SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(Cc3ccccc3)NC(=O)CCOCC#C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YVV "SYSTEMATIC NAME" ACDLabs 12.01 "N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide" YVV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (4~{R})-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[[(2~{S})-3-phenyl-2-[[(2~{R})-3-phenyl-2-(3-prop-2-ynoxypropanoylamino)propanoyl]amino]propanoyl]amino]pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVV "Create component" 2021-04-01 RCSB YVV "Initial release" 2022-10-12 RCSB #