data_YVW # _chem_comp.id YVW _chem_comp.name "(5~{S})-5-(1~{H}-indol-2-yl)piperazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-21 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 215.251 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PI0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVW N3 N1 N 0 1 Y N N N N N -9.346 -1.485 -8.575 -1.112 1.145 0.506 N3 YVW 1 YVW C4 C1 C 0 1 N N N N N N -11.246 -3.207 -10.344 1.889 0.744 -1.031 C4 YVW 2 YVW C5 C2 C 0 1 Y N N N N N -9.956 -1.170 -9.712 -0.193 0.179 0.194 C5 YVW 3 YVW C6 C3 C 0 1 Y N N N N N -10.267 0.123 -9.743 -0.820 -0.925 -0.241 C6 YVW 4 YVW C7 C4 C 0 1 Y N N N N N -9.843 0.652 -8.598 -2.258 -0.644 -0.205 C7 YVW 5 YVW C8 C5 C 0 1 Y N N N N N -9.896 1.939 -8.088 -3.399 -1.380 -0.530 C8 YVW 6 YVW C10 C6 C 0 1 Y N N N N N -8.773 1.195 -6.093 -4.765 0.483 0.090 C10 YVW 7 YVW O O1 O 0 1 N N N N N N -10.627 -5.416 -13.151 5.219 -0.062 -0.104 O YVW 8 YVW C C7 C 0 1 N N N N N N -10.474 -4.486 -12.359 4.008 -0.028 -0.052 C YVW 9 YVW N2 N2 N 0 1 N N N N N N -11.407 -4.304 -11.330 3.347 0.669 -0.983 N2 YVW 10 YVW C2 C8 C 0 1 N N N N N N -9.271 -3.556 -12.511 3.313 -0.769 1.055 C2 YVW 11 YVW N N3 N 0 1 N N N N N N -9.014 -2.827 -11.261 1.896 -0.951 0.724 N YVW 12 YVW C3 C9 C 0 1 N N S N N N -10.254 -2.160 -10.841 1.300 0.333 0.320 C3 YVW 13 YVW C9 C10 C 0 1 Y N N N N N -9.357 2.214 -6.836 -4.635 -0.816 -0.380 C9 YVW 14 YVW C11 C11 C 0 1 Y N N N N N -8.724 -0.099 -6.605 -3.652 1.225 0.421 C11 YVW 15 YVW C12 C12 C 0 1 Y N N N N N -9.263 -0.368 -7.856 -2.384 0.673 0.273 C12 YVW 16 YVW H13 H1 H 0 1 N N N N N N -9.012 -2.390 -8.310 -0.898 2.028 0.844 H13 YVW 17 YVW H7 H2 H 0 1 N N N N N N -12.222 -2.727 -10.179 1.588 1.766 -1.261 H7 YVW 18 YVW H8 H3 H 0 1 N N N N N N -10.879 -3.628 -9.396 1.518 0.074 -1.807 H8 YVW 19 YVW H5 H4 H 0 1 N N N N N N -10.768 0.644 -10.545 -0.354 -1.846 -0.558 H5 YVW 20 YVW H4 H5 H 0 1 N N N N N N -10.356 2.729 -8.663 -3.305 -2.391 -0.897 H4 YVW 21 YVW H2 H6 H 0 1 N N N N N N -8.357 1.407 -5.119 -5.748 0.915 0.202 H2 YVW 22 YVW H77 H7 H 0 1 N N N N N N -12.191 -4.921 -11.259 3.858 1.144 -1.656 H77 YVW 23 YVW H9 H8 H 0 1 N N N N N N -8.384 -4.153 -12.769 3.782 -1.744 1.187 H9 YVW 24 YVW H10 H9 H 0 1 N N N N N N -9.473 -2.833 -13.315 3.398 -0.200 1.980 H10 YVW 25 YVW H33 H10 H 0 1 N N N N N N -8.720 -3.468 -10.552 1.780 -1.646 0.003 H33 YVW 26 YVW H6 H12 H 0 1 N N N N N N -10.695 -1.617 -11.690 1.530 1.094 1.066 H6 YVW 27 YVW H3 H13 H 0 1 N N N N N N -9.392 3.219 -6.441 -5.517 -1.386 -0.631 H3 YVW 28 YVW H1 H14 H 0 1 N N N N N N -8.268 -0.892 -6.030 -3.764 2.234 0.790 H1 YVW 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVW O C DOUB N N 1 YVW C2 C SING N N 2 YVW C2 N SING N N 3 YVW C N2 SING N N 4 YVW N2 C4 SING N N 5 YVW N C3 SING N N 6 YVW C3 C4 SING N N 7 YVW C3 C5 SING N N 8 YVW C6 C5 DOUB Y N 9 YVW C6 C7 SING Y N 10 YVW C5 N3 SING Y N 11 YVW C7 C8 DOUB Y N 12 YVW C7 C12 SING Y N 13 YVW N3 C12 SING Y N 14 YVW C8 C9 SING Y N 15 YVW C12 C11 DOUB Y N 16 YVW C9 C10 DOUB Y N 17 YVW C11 C10 SING Y N 18 YVW N3 H13 SING N N 19 YVW C4 H7 SING N N 20 YVW C4 H8 SING N N 21 YVW C6 H5 SING N N 22 YVW C8 H4 SING N N 23 YVW C10 H2 SING N N 24 YVW N2 H77 SING N N 25 YVW C2 H9 SING N N 26 YVW C2 H10 SING N N 27 YVW N H33 SING N N 28 YVW C3 H6 SING N N 29 YVW C9 H3 SING N N 30 YVW C11 H1 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVW InChI InChI 1.06 "InChI=1S/C12H13N3O/c16-12-7-13-11(6-14-12)10-5-8-3-1-2-4-9(8)15-10/h1-5,11,13,15H,6-7H2,(H,14,16)/t11-/m0/s1" YVW InChIKey InChI 1.06 AKZZWJXICXKZDI-NSHDSACASA-N YVW SMILES_CANONICAL CACTVS 3.385 "O=C1CN[C@@H](CN1)c2[nH]c3ccccc3c2" YVW SMILES CACTVS 3.385 "O=C1CN[CH](CN1)c2[nH]c3ccccc3c2" YVW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc([nH]2)[C@@H]3CNC(=O)CN3" YVW SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc([nH]2)C3CNC(=O)CN3" # _pdbx_chem_comp_identifier.comp_id YVW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S})-5-(1~{H}-indol-2-yl)piperazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVW "Create component" 2023-06-21 PDBE YVW "Initial release" 2024-07-10 RCSB #