data_YVY # _chem_comp.id YVY _chem_comp.name "N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-[(3S)-6-(carbamoylamino)-2-oxohexan-3-yl]-L-phenylalaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H39 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 577.671 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MAV _chem_comp.pdbx_subcomponent_list "YWD DPN PHE YWG" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVY C10 C1 C 0 1 N N N 27.541 -5.719 27.079 8.378 -2.937 -1.251 C10 YWD 1 YVY C01 C10 C 0 1 N N N 25.908 -8.834 28.633 4.113 -0.702 -0.484 C01 YWD 2 YVY C05 C12 C 0 1 N N N 25.176 -7.602 29.140 5.138 -1.654 0.076 C05 YWD 3 YVY C08 C15 C 0 1 N N N 26.123 -6.440 28.815 6.286 -1.814 -0.923 C08 YWD 4 YVY C11 C16 C 0 1 N N N 28.293 -4.734 27.978 9.311 -3.878 -0.610 C11 YWD 5 YVY C12 C17 C 0 1 N N N 28.874 -3.962 28.667 10.055 -4.628 -0.098 C12 YWD 6 YVY O03 O1 O 0 1 N N N 26.816 -9.240 29.286 4.284 -0.200 -1.575 O03 YWD 7 YVY O09 O2 O 0 1 N N N 27.081 -6.803 27.842 7.258 -2.717 -0.391 O09 YWD 8 YVY N02 N1 N 0 1 N N N 25.532 -9.491 27.387 3.007 -0.407 0.228 N DPN 9 YVY C04 C11 C 0 1 N N R 26.349 -10.625 27.051 2.011 0.518 -0.317 CA DPN 10 YVY C06 C13 C 0 1 N N N 25.664 -11.996 27.204 0.667 0.230 0.301 C DPN 11 YVY O14 O3 O 0 1 N N N 24.500 -12.082 26.954 0.552 -0.660 1.115 O DPN 12 YVY C07 C14 C 0 1 N N N 26.696 -10.733 25.547 2.422 1.957 0.004 CB DPN 13 YVY C40 C29 C 0 1 Y N N 27.484 -9.573 24.949 3.706 2.285 -0.714 CG DPN 14 YVY C39 C28 C 0 1 Y N N 26.872 -8.675 24.088 4.922 2.040 -0.103 CD1 DPN 15 YVY C41 C30 C 0 1 Y N N 28.816 -9.407 25.278 3.668 2.825 -1.986 CD2 DPN 16 YVY C38 C27 C 0 1 Y N N 27.589 -7.606 23.572 6.099 2.336 -0.764 CE1 DPN 17 YVY C42 C31 C 0 1 Y N N 29.536 -8.343 24.755 4.845 3.125 -2.645 CE2 DPN 18 YVY C37 C26 C 0 1 Y N N 28.924 -7.444 23.903 6.061 2.876 -2.036 CZ DPN 19 YVY N13 N2 N 0 1 N N N 26.442 -13.188 27.568 -0.408 0.963 -0.052 N PHE 20 YVY C15 C2 C 0 1 N N S 25.840 -14.524 27.615 -1.714 0.683 0.548 CA PHE 21 YVY C16 C18 C 0 1 N N N 25.750 -15.172 28.986 -2.805 1.149 -0.382 C PHE 22 YVY O19 O4 O 0 1 N N N 26.068 -14.459 29.859 -2.519 1.664 -1.442 O PHE 23 YVY C17 C3 C 0 1 N N N 26.598 -15.402 26.594 -1.832 1.423 1.882 CB PHE 24 YVY C24 C7 C 0 1 Y N N 26.674 -14.769 25.182 -0.820 0.871 2.853 CG PHE 25 YVY C23 C19 C 0 1 Y N N 25.565 -14.762 24.360 0.445 1.424 2.922 CD1 PHE 26 YVY C25 C20 C 0 1 Y N N 27.838 -14.183 24.737 -1.159 -0.184 3.679 CD2 PHE 27 YVY C22 C6 C 0 1 Y N N 25.618 -14.188 23.090 1.373 0.917 3.813 CE1 PHE 28 YVY C26 C8 C 0 1 Y N N 27.902 -13.606 23.469 -0.232 -0.690 4.570 CE2 PHE 29 YVY C21 C5 C 0 1 Y N N 26.789 -13.608 22.643 1.036 -0.142 4.634 CZ PHE 30 YVY C20 C4 C 0 1 N N S 24.997 -17.278 30.389 -5.158 1.445 -0.940 C20 YWG 31 YVY C28 C9 C 0 1 N N N 26.301 -17.218 31.161 -6.435 0.647 -0.669 C28 YWG 32 YVY C27 C21 C 0 1 N N N 23.662 -16.722 30.966 -5.423 2.911 -0.710 C27 YWG 33 YVY C29 C22 C 0 1 N N N 22.778 -15.779 30.138 -6.213 3.702 -1.721 C29 YWG 34 YVY C31 C23 C 0 1 N N N 27.110 -18.392 30.581 -6.202 -0.823 -1.022 C31 YWG 35 YVY C32 C24 C 0 1 N N N 28.362 -18.540 31.438 -7.479 -1.621 -0.751 C32 YWG 36 YVY C34 C25 C 0 1 N N N 29.068 -19.901 33.424 -8.250 -3.926 -0.930 C34 YWG 37 YVY N18 N3 N 0 1 N N N 25.229 -16.558 29.116 -4.098 0.993 -0.036 N18 YWG 38 YVY N33 N4 N 0 1 N N N 28.013 -19.348 32.596 -7.256 -3.029 -1.089 N33 YWG 39 YVY N35 N5 N 0 1 N N N 30.479 -19.660 33.118 -8.045 -5.221 -1.241 N35 YWG 40 YVY O30 O5 O 0 1 N N N 23.237 -17.090 32.001 -5.003 3.451 0.285 O30 YWG 41 YVY O36 O6 O 0 1 N N N 28.782 -20.584 34.336 -9.331 -3.566 -0.506 O36 YWG 42 YVY H102 H1 H 0 0 N N N 28.218 -6.086 26.294 8.885 -1.991 -1.436 H102 YWD 43 YVY H101 H2 H 0 0 N N N 26.684 -5.209 26.615 8.033 -3.355 -2.197 H101 YWD 44 YVY H051 H13 H 0 0 N N N 24.214 -7.478 28.620 5.526 -1.259 1.015 H051 YWD 45 YVY H052 H14 H 0 0 N N N 25.001 -7.671 30.224 4.674 -2.624 0.254 H052 YWD 46 YVY H082 H17 H 0 0 N N N 26.646 -6.138 29.735 5.898 -2.209 -1.862 H082 YWD 47 YVY H081 H18 H 0 0 N N N 25.532 -5.594 28.435 6.750 -0.844 -1.101 H081 YWD 48 YVY H121 H19 H 0 0 N N N 29.393 -3.272 29.282 10.721 -5.299 0.359 H121 YWD 49 YVY H021 H34 H 0 0 N N N 24.772 -9.180 26.816 2.871 -0.809 1.100 H DPN 50 YVY H041 H12 H 0 0 N N N 27.281 -10.619 27.636 1.949 0.391 -1.398 HA DPN 51 YVY H071 H16 H 0 0 N N N 27.289 -11.649 25.405 1.638 2.640 -0.322 HB2 DPN 52 YVY H072 H15 H 0 0 N N N 25.751 -10.818 24.991 2.571 2.061 1.079 HB3 DPN 53 YVY H391 H31 H 0 0 N N N 25.835 -8.808 23.819 4.951 1.618 0.891 HD1 DPN 54 YVY H411 H32 H 0 0 N N N 29.298 -10.108 25.944 2.718 3.012 -2.465 HD2 DPN 55 YVY H381 H30 H 0 0 N N N 27.107 -6.900 22.912 7.049 2.141 -0.289 HE1 DPN 56 YVY H421 H33 H 0 0 N N N 30.577 -8.217 25.014 4.815 3.546 -3.639 HE2 DPN 57 YVY H371 H29 H 0 0 N N N 29.486 -6.616 23.496 6.981 3.107 -2.553 HZ DPN 58 YVY H131 H35 H 0 0 N N N 27.411 -13.085 27.790 -0.316 1.676 -0.704 H PHE 59 YVY H151 H3 H 0 0 N N N 24.810 -14.432 27.241 -1.814 -0.389 0.717 HA PHE 60 YVY H171 H5 H 0 0 N N N 27.623 -15.560 26.962 -1.644 2.485 1.726 HB2 PHE 61 YVY H172 H4 H 0 0 N N N 26.083 -16.371 26.516 -2.835 1.287 2.286 HB3 PHE 62 YVY H231 H20 H 0 0 N N N 24.644 -15.207 24.705 0.708 2.251 2.280 HD1 PHE 63 YVY H251 H21 H 0 0 N N N 28.709 -14.170 25.376 -2.149 -0.613 3.628 HD2 PHE 64 YVY H221 H8 H 0 0 N N N 24.744 -14.197 22.456 2.362 1.349 3.866 HE1 PHE 65 YVY H261 H9 H 0 0 N N N 28.823 -13.156 23.129 -0.497 -1.515 5.216 HE2 PHE 66 YVY H211 H7 H 0 0 N N N 26.837 -13.161 21.661 1.761 -0.538 5.330 HZ PHE 67 YVY H201 H6 H 0 0 N N N 24.817 -18.335 30.143 -4.845 1.291 -1.973 H201 YWG 68 YVY H281 H10 H 0 0 N N N 26.817 -16.262 30.990 -6.698 0.731 0.385 H281 YWG 69 YVY H282 H11 H 0 0 N N N 26.127 -17.353 32.239 -7.247 1.043 -1.279 H282 YWG 70 YVY H1 H22 H 0 1 N N N 21.838 -15.590 30.677 -7.207 3.268 -1.825 H1 YWG 71 YVY H2 H23 H 0 1 N N N 23.307 -14.828 29.978 -6.301 4.735 -1.385 H2 YWG 72 YVY H3 H24 H 0 1 N N N 22.556 -16.244 29.166 -5.701 3.675 -2.683 H3 YWG 73 YVY H311 H25 H 0 0 N N N 26.515 -19.316 30.620 -5.939 -0.906 -2.077 H311 YWG 74 YVY H312 H26 H 0 0 N N N 27.389 -18.179 29.539 -5.390 -1.219 -0.412 H312 YWG 75 YVY H322 H27 H 0 0 N N N 29.155 -19.037 30.860 -7.743 -1.538 0.304 H322 YWG 76 YVY H321 H28 H 0 0 N N N 28.712 -17.549 31.764 -8.292 -1.225 -1.360 H321 YWG 77 YVY H181 H36 H 0 0 N N N 25.017 -17.047 28.270 -4.327 0.581 0.812 H181 YWG 78 YVY H331 H37 H 0 0 N N N 27.054 -19.521 32.820 -6.394 -3.316 -1.427 H331 YWG 79 YVY H352 H38 H 0 0 N N N 31.191 -20.076 33.684 -8.760 -5.866 -1.126 H352 YWG 80 YVY H351 H39 H 0 0 N N N 30.731 -19.080 32.343 -7.182 -5.508 -1.579 H351 YWG 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVY C21 C22 DOUB Y N 1 YVY C21 C26 SING Y N 2 YVY C22 C23 SING Y N 3 YVY C26 C25 DOUB Y N 4 YVY C38 C37 DOUB Y N 5 YVY C38 C39 SING Y N 6 YVY C37 C42 SING Y N 7 YVY C39 C40 DOUB Y N 8 YVY C23 C24 DOUB Y N 9 YVY C25 C24 SING Y N 10 YVY C42 C41 DOUB Y N 11 YVY C40 C41 SING Y N 12 YVY C40 C07 SING N N 13 YVY C24 C17 SING N N 14 YVY C07 C04 SING N N 15 YVY C17 C15 SING N N 16 YVY O14 C06 DOUB N N 17 YVY C04 C06 SING N N 18 YVY C04 N02 SING N N 19 YVY C10 O09 SING N N 20 YVY C10 C11 SING N N 21 YVY C06 N13 SING N N 22 YVY N02 C01 SING N N 23 YVY N13 C15 SING N N 24 YVY C15 C16 SING N N 25 YVY O09 C08 SING N N 26 YVY C11 C12 TRIP N N 27 YVY C01 C05 SING N N 28 YVY C01 O03 DOUB N N 29 YVY C08 C05 SING N N 30 YVY C16 N18 SING N N 31 YVY C16 O19 DOUB N N 32 YVY N18 C20 SING N N 33 YVY C29 C27 SING N N 34 YVY C20 C27 SING N N 35 YVY C20 C28 SING N N 36 YVY C31 C28 SING N N 37 YVY C31 C32 SING N N 38 YVY C27 O30 DOUB N N 39 YVY C32 N33 SING N N 40 YVY N33 C34 SING N N 41 YVY N35 C34 SING N N 42 YVY C34 O36 DOUB N N 43 YVY C10 H102 SING N N 44 YVY C10 H101 SING N N 45 YVY C15 H151 SING N N 46 YVY C17 H172 SING N N 47 YVY C17 H171 SING N N 48 YVY C20 H201 SING N N 49 YVY C21 H211 SING N N 50 YVY C22 H221 SING N N 51 YVY C26 H261 SING N N 52 YVY C28 H281 SING N N 53 YVY C28 H282 SING N N 54 YVY C04 H041 SING N N 55 YVY C05 H051 SING N N 56 YVY C05 H052 SING N N 57 YVY C07 H072 SING N N 58 YVY C07 H071 SING N N 59 YVY C08 H082 SING N N 60 YVY C08 H081 SING N N 61 YVY C12 H121 SING N N 62 YVY C23 H231 SING N N 63 YVY C25 H251 SING N N 64 YVY C29 H1 SING N N 65 YVY C29 H2 SING N N 66 YVY C29 H3 SING N N 67 YVY C31 H311 SING N N 68 YVY C31 H312 SING N N 69 YVY C32 H322 SING N N 70 YVY C32 H321 SING N N 71 YVY C37 H371 SING N N 72 YVY C38 H381 SING N N 73 YVY C39 H391 SING N N 74 YVY C41 H411 SING N N 75 YVY C42 H421 SING N N 76 YVY N02 H021 SING N N 77 YVY N13 H131 SING N N 78 YVY N18 H181 SING N N 79 YVY N33 H331 SING N N 80 YVY N35 H352 SING N N 81 YVY N35 H351 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVY SMILES ACDLabs 12.01 "CC(=O)C(CCCNC(N)=O)NC(=O)C(NC(=O)C(Cc1ccccc1)NC(=O)CCOCC#C)Cc1ccccc1" YVY InChI InChI 1.03 "InChI=1S/C31H39N5O6/c1-3-18-42-19-16-28(38)34-26(20-23-11-6-4-7-12-23)29(39)36-27(21-24-13-8-5-9-14-24)30(40)35-25(22(2)37)15-10-17-33-31(32)41/h1,4-9,11-14,25-27H,10,15-21H2,2H3,(H,34,38)(H,35,40)(H,36,39)(H3,32,33,41)/t25-,26+,27-/m0/s1" YVY InChIKey InChI 1.03 VYPOUUBVMAOAGP-VJGNERBWSA-N YVY SMILES_CANONICAL CACTVS 3.385 "CC(=O)[C@H](CCCNC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](Cc2ccccc2)NC(=O)CCOCC#C" YVY SMILES CACTVS 3.385 "CC(=O)[CH](CCCNC(N)=O)NC(=O)[CH](Cc1ccccc1)NC(=O)[CH](Cc2ccccc2)NC(=O)CCOCC#C" YVY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)[C@H](CCCNC(=O)N)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](Cc2ccccc2)NC(=O)CCOCC#C" YVY SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)C(CCCNC(=O)N)NC(=O)C(Cc1ccccc1)NC(=O)C(Cc2ccccc2)NC(=O)CCOCC#C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YVY "SYSTEMATIC NAME" ACDLabs 12.01 "N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-[(3S)-6-(carbamoylamino)-2-oxohexan-3-yl]-L-phenylalaninamide" YVY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-~{N}-[(2~{S})-1-[[(3~{S})-6-(aminocarbonylamino)-2-oxidanylidene-hexan-3-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]-3-phenyl-2-(3-prop-2-ynoxypropanoylamino)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVY "Create component" 2021-04-01 RCSB YVY "Modify subcomponent list" 2021-04-01 RCSB YVY "Initial release" 2022-10-12 RCSB #