data_YVZ # _chem_comp.id YVZ _chem_comp.name "(1R,2S,5S)-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-N-{(2R)-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-24 _chem_comp.pdbx_modified_date 2024-07-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.570 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YVZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FY6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YVZ C1 C1 C 0 1 N N N N N N 17.855 11.314 21.632 -4.513 -2.730 1.755 C1 YVZ 1 YVZ C2 C2 C 0 1 N N N N N N 17.066 12.010 22.447 -5.316 -1.781 0.864 C2 YVZ 2 YVZ C3 C3 C 0 1 N N R N N N 17.586 11.999 23.881 -4.451 -0.575 0.494 C3 YVZ 3 YVZ C4 C4 C 0 1 N N N N N N 16.663 11.144 24.773 -5.292 0.433 -0.292 C4 YVZ 4 YVZ C5 C5 C 0 1 N N S N N N 17.205 11.044 26.311 -4.468 1.698 -0.544 C5 YVZ 5 YVZ C6 C6 C 0 1 N N N N N N 18.259 10.297 26.352 -4.132 2.399 0.793 C6 YVZ 6 YVZ C7 C7 C 0 1 N N N N N N 18.138 9.295 27.727 -4.222 3.890 0.398 C7 YVZ 7 YVZ N1 N1 N 0 1 N N N N N N 16.879 9.202 28.058 -5.132 3.936 -0.752 N1 YVZ 8 YVZ C8 C8 C 0 1 N N N N N N 16.101 10.313 27.206 -5.285 2.720 -1.304 C8 YVZ 9 YVZ O1 O1 O 0 1 N N N N N N 14.935 10.548 27.227 -5.976 2.477 -2.270 O1 YVZ 10 YVZ N2 N2 N 0 1 N N N N N N 17.593 13.368 24.391 -3.323 -1.018 -0.330 N2 YVZ 11 YVZ C9 C9 C 0 1 N N N N N N 18.836 14.009 24.894 -2.097 -1.141 0.216 C9 YVZ 12 YVZ O2 O2 O 0 1 N N N N N N 19.866 13.417 24.914 -1.928 -0.885 1.390 O2 YVZ 13 YVZ C10 C10 C 0 1 N N S N N N 18.742 15.413 25.418 -0.937 -1.596 -0.631 C10 YVZ 14 YVZ C11 C11 C 0 1 N N R N N N 19.276 16.392 24.609 -0.913 -3.137 -0.726 C11 YVZ 15 YVZ C12 C12 C 0 1 N N S N N N 20.623 16.856 25.228 0.057 -3.589 0.385 C12 YVZ 16 YVZ C13 C13 C 0 1 N N N N N N 20.742 16.093 26.628 0.534 -2.283 1.054 C13 YVZ 17 YVZ N3 N3 N 0 1 N N N N N N 19.557 15.504 26.830 0.347 -1.241 0.018 N3 YVZ 18 YVZ C14 C14 C 0 1 N N N N N N 19.004 14.983 28.108 1.160 -0.206 -0.271 C14 YVZ 19 YVZ O3 O3 O 0 1 N N N N N N 17.925 14.483 28.105 0.905 0.524 -1.205 O3 YVZ 20 YVZ C15 C15 C 0 1 N N S N N N 19.814 15.097 29.406 2.388 0.043 0.567 C15 YVZ 21 YVZ N4 N4 N 0 1 N N N N N N 18.956 15.695 30.396 3.392 0.747 -0.236 N4 YVZ 22 YVZ C16 C16 C 0 1 N N N N N N 19.117 17.117 30.719 4.698 0.645 0.078 C16 YVZ 23 YVZ O4 O4 O 0 1 N N N N N N 19.948 17.773 30.180 5.043 -0.031 1.025 O4 YVZ 24 YVZ C17 C17 C 0 1 N N N N N N 18.193 17.746 31.770 5.731 1.369 -0.747 C17 YVZ 25 YVZ F1 F1 F 0 1 N N N N N N 18.200 19.107 31.633 5.665 0.923 -2.071 F1 YVZ 26 YVZ F2 F2 F 0 1 N N N N N N 16.930 17.266 31.569 5.480 2.744 -0.705 F2 YVZ 27 YVZ F3 F3 F 0 1 N N N N N N 18.625 17.397 33.019 7.005 1.111 -0.230 F3 YVZ 28 YVZ C18 C18 C 0 1 N N N N N N 20.324 13.704 29.845 2.013 0.898 1.779 C18 YVZ 29 YVZ C19 C19 C 0 1 N N N N N N 21.044 13.024 28.656 3.275 1.232 2.578 C19 YVZ 30 YVZ C20 C20 C 0 1 N N N N N N 21.344 13.877 31.001 1.352 2.194 1.305 C20 YVZ 31 YVZ C21 C21 C 0 1 N N N N N N 19.161 12.792 30.325 1.037 0.123 2.667 C21 YVZ 32 YVZ C22 C22 C 0 1 N N N N N N 19.654 17.893 24.602 0.410 -3.816 -1.087 C22 YVZ 33 YVZ C23 C23 C 0 1 N N N N N N 18.860 18.740 25.622 1.511 -2.941 -1.691 C23 YVZ 34 YVZ C24 C24 C 0 1 N N N N N N 20.086 18.505 23.249 0.345 -5.251 -1.614 C24 YVZ 35 YVZ H1 H1 H 0 1 N N N N N N 17.448 11.346 20.611 -4.210 -2.208 2.663 H1 YVZ 36 YVZ H2 H2 H 0 1 N N N N N N 18.865 11.751 21.638 -5.129 -3.590 2.019 H2 YVZ 37 YVZ H3 H3 H 0 1 N N N N N N 17.905 10.270 21.974 -3.627 -3.070 1.218 H3 YVZ 38 YVZ H36 H4 H 0 1 N N N N N N 17.017 13.050 22.093 -5.620 -2.303 -0.043 H36 YVZ 39 YVZ H37 H5 H 0 1 N N N N N N 16.058 11.569 22.430 -6.202 -1.441 1.401 H37 YVZ 40 YVZ H4 H6 H 0 1 N N N N N N 18.602 11.577 23.900 -4.075 -0.105 1.402 H4 YVZ 41 YVZ H5 H7 H 0 1 N N N N N N 15.660 11.596 24.780 -5.586 -0.004 -1.246 H5 YVZ 42 YVZ H6 H8 H 0 1 N N N N N N 16.605 10.129 24.352 -6.183 0.688 0.281 H6 YVZ 43 YVZ H7 H9 H 0 1 N N N N N N 17.365 12.062 26.696 -3.555 1.456 -1.087 H7 YVZ 44 YVZ H8 H10 H 0 1 N N N N N N 18.315 9.680 25.443 -4.868 2.154 1.558 H8 YVZ 45 YVZ H9 H11 H 0 1 N N N N N N 19.159 10.925 26.425 -3.126 2.144 1.126 H9 YVZ 46 YVZ H10 H12 H 0 1 N N N N N N 18.536 8.296 27.495 -4.626 4.476 1.223 H10 YVZ 47 YVZ H11 H13 H 0 1 N N N N N N 18.709 9.734 28.558 -3.238 4.265 0.115 H11 YVZ 48 YVZ H12 H14 H 0 1 N N N N N N 16.479 8.563 28.715 -5.569 4.741 -1.073 H12 YVZ 49 YVZ H13 H15 H 0 1 N N N N N N 16.739 13.888 24.402 -3.459 -1.222 -1.268 H13 YVZ 50 YVZ H14 H16 H 0 1 N N N N N N 17.688 15.634 25.640 -0.996 -1.153 -1.625 H14 YVZ 51 YVZ H15 H17 H 0 1 N N N N N N 19.487 15.985 23.609 -1.859 -3.647 -0.906 H15 YVZ 52 YVZ H16 H18 H 0 1 N N N N N N 21.480 16.637 24.574 -0.167 -4.437 1.033 H16 YVZ 53 YVZ H17 H19 H 0 1 N N N N N N 21.541 15.338 26.585 -0.076 -2.060 1.931 H17 YVZ 54 YVZ H18 H20 H 0 1 N N N N N N 20.956 16.808 27.436 1.585 -2.359 1.331 H18 YVZ 55 YVZ H19 H21 H 0 1 N N N N N N 20.684 15.745 29.223 2.796 -0.909 0.906 H19 YVZ 56 YVZ H20 H22 H 0 1 N N N N N N 18.258 15.147 30.858 3.116 1.287 -0.993 H20 YVZ 57 YVZ H22 H23 H 0 1 N N N N N N 21.408 12.033 28.965 3.970 1.783 1.945 H22 YVZ 58 YVZ H21 H24 H 0 1 N N N N N N 20.341 12.911 27.818 3.008 1.840 3.441 H21 YVZ 59 YVZ H23 H25 H 0 1 N N N N N N 21.895 13.645 28.339 3.746 0.308 2.915 H23 YVZ 60 YVZ H25 H26 H 0 1 N N N N N N 20.850 14.360 31.857 0.454 1.956 0.736 H25 YVZ 61 YVZ H24 H27 H 0 1 N N N N N N 21.724 12.891 31.305 1.085 2.803 2.168 H24 YVZ 62 YVZ H26 H28 H 0 1 N N N N N N 22.182 14.503 30.660 2.047 2.746 0.672 H26 YVZ 63 YVZ H29 H29 H 0 1 N N N N N N 18.645 13.270 31.171 1.544 -0.741 3.096 H29 YVZ 64 YVZ H28 H30 H 0 1 N N N N N N 18.450 12.640 29.500 0.683 0.771 3.469 H28 YVZ 65 YVZ H27 H31 H 0 1 N N N N N N 19.565 11.820 30.644 0.190 -0.212 2.069 H27 YVZ 66 YVZ H31 H32 H 0 1 N N N N N N 18.647 18.134 26.515 1.774 -2.151 -0.987 H31 YVZ 67 YVZ H30 H33 H 0 1 N N N N N N 19.454 19.620 25.909 2.389 -3.553 -1.896 H30 YVZ 68 YVZ H32 H34 H 0 1 N N N N N N 17.914 19.069 25.168 1.153 -2.497 -2.619 H32 YVZ 69 YVZ H34 H35 H 0 1 N N N N N N 20.325 19.570 23.387 -0.250 -5.276 -2.527 H34 YVZ 70 YVZ H33 H36 H 0 1 N N N N N N 20.975 17.976 22.874 1.354 -5.605 -1.828 H33 YVZ 71 YVZ H35 H37 H 0 1 N N N N N N 19.266 18.404 22.523 -0.114 -5.894 -0.863 H35 YVZ 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YVZ C1 C2 SING N N 1 YVZ C2 C3 SING N N 2 YVZ C24 C22 SING N N 3 YVZ C3 N2 SING N N 4 YVZ C3 C4 SING N N 5 YVZ N2 C9 SING N N 6 YVZ C22 C11 SING N N 7 YVZ C22 C12 SING N N 8 YVZ C22 C23 SING N N 9 YVZ C11 C12 SING N N 10 YVZ C11 C10 SING N N 11 YVZ C4 C5 SING N N 12 YVZ C9 O2 DOUB N N 13 YVZ C9 C10 SING N N 14 YVZ C12 C13 SING N N 15 YVZ C10 N3 SING N N 16 YVZ C5 C6 SING N N 17 YVZ C5 C8 SING N N 18 YVZ C6 C7 SING N N 19 YVZ C13 N3 SING N N 20 YVZ N3 C14 SING N N 21 YVZ C8 O1 DOUB N N 22 YVZ C8 N1 SING N N 23 YVZ C7 N1 SING N N 24 YVZ O3 C14 DOUB N N 25 YVZ C14 C15 SING N N 26 YVZ C19 C18 SING N N 27 YVZ C15 C18 SING N N 28 YVZ C15 N4 SING N N 29 YVZ C18 C21 SING N N 30 YVZ C18 C20 SING N N 31 YVZ O4 C16 DOUB N N 32 YVZ N4 C16 SING N N 33 YVZ C16 C17 SING N N 34 YVZ F2 C17 SING N N 35 YVZ F1 C17 SING N N 36 YVZ C17 F3 SING N N 37 YVZ C1 H1 SING N N 38 YVZ C1 H2 SING N N 39 YVZ C1 H3 SING N N 40 YVZ C2 H36 SING N N 41 YVZ C2 H37 SING N N 42 YVZ C3 H4 SING N N 43 YVZ C4 H5 SING N N 44 YVZ C4 H6 SING N N 45 YVZ C5 H7 SING N N 46 YVZ C6 H8 SING N N 47 YVZ C6 H9 SING N N 48 YVZ C7 H10 SING N N 49 YVZ C7 H11 SING N N 50 YVZ N1 H12 SING N N 51 YVZ N2 H13 SING N N 52 YVZ C10 H14 SING N N 53 YVZ C11 H15 SING N N 54 YVZ C12 H16 SING N N 55 YVZ C13 H17 SING N N 56 YVZ C13 H18 SING N N 57 YVZ C15 H19 SING N N 58 YVZ N4 H20 SING N N 59 YVZ C19 H22 SING N N 60 YVZ C19 H21 SING N N 61 YVZ C19 H23 SING N N 62 YVZ C20 H25 SING N N 63 YVZ C20 H24 SING N N 64 YVZ C20 H26 SING N N 65 YVZ C21 H29 SING N N 66 YVZ C21 H28 SING N N 67 YVZ C21 H27 SING N N 68 YVZ C23 H31 SING N N 69 YVZ C23 H30 SING N N 70 YVZ C23 H32 SING N N 71 YVZ C24 H34 SING N N 72 YVZ C24 H33 SING N N 73 YVZ C24 H35 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YVZ SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CC)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" YVZ InChI InChI 1.06 "InChI=1S/C24H37F3N4O4/c1-7-13(10-12-8-9-28-18(12)32)29-19(33)16-15-14(23(15,5)6)11-31(16)20(34)17(22(2,3)4)30-21(35)24(25,26)27/h12-17H,7-11H2,1-6H3,(H,28,32)(H,29,33)(H,30,35)/t12-,13+,14-,15-,16-,17+/m0/s1" YVZ InChIKey InChI 1.06 QIKPVUMAJHNNAL-FHULIHMCSA-N YVZ SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@H](CN2C(=O)[C@@H](NC(=O)C(F)(F)F)C(C)(C)C)C3(C)C" YVZ SMILES CACTVS 3.385 "CC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3[CH](CN2C(=O)[CH](NC(=O)C(F)(F)F)C(C)(C)C)C3(C)C" YVZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@@H](C3(C)C)CN2C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F" YVZ SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CC1CCNC1=O)NC(=O)C2C3C(C3(C)C)CN2C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YVZ "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-N-{(2R)-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-azabicyclo[3.1.0]hexane-2-carboxamide" YVZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{R})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YVZ "Create component" 2023-02-24 RCSB YVZ "Initial release" 2024-07-24 RCSB #