data_YWG # _chem_comp.id YWG _chem_comp.name "N-[(4S)-4-amino-5-oxohexyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H15 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.213 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YWG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MAV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YWG C20 C4 C 0 1 N N S 24.997 -17.278 30.389 -2.295 -0.450 0.403 C20 YWG 1 YWG C28 C9 C 0 1 N N N 26.301 -17.218 31.161 -1.065 0.286 -0.130 C28 YWG 2 YWG C27 C21 C 0 1 N N N 23.662 -16.722 30.966 -3.540 0.311 0.023 C27 YWG 3 YWG C29 C22 C 0 1 N N N 22.778 -15.779 30.138 -3.899 1.579 0.753 C29 YWG 4 YWG C31 C23 C 0 1 N N N 27.110 -18.392 30.581 0.203 -0.417 0.360 C31 YWG 5 YWG C32 C24 C 0 1 N N N 28.362 -18.540 31.438 1.433 0.319 -0.172 C32 YWG 6 YWG C34 C25 C 0 1 N N N 29.068 -19.901 33.424 3.859 0.122 -0.051 C34 YWG 7 YWG N18 N3 N 0 1 N N N 25.229 -16.558 29.116 -2.349 -1.798 -0.179 N18 YWG 8 YWG N33 N4 N 0 1 N N N 28.013 -19.348 32.596 2.647 -0.354 0.297 N33 YWG 9 YWG N35 N5 N 0 1 N N N 30.479 -19.660 33.118 4.975 -0.498 0.381 N35 YWG 10 YWG O30 O5 O 0 1 N N N 23.237 -17.090 32.001 -4.248 -0.096 -0.866 O30 YWG 11 YWG O36 O6 O 0 1 N N N 28.782 -20.584 34.336 3.945 1.110 -0.753 O36 YWG 12 YWG H201 H6 H 0 0 N N N 24.817 -18.335 30.143 -2.232 -0.525 1.488 H201 YWG 13 YWG H281 H10 H 0 0 N N N 26.817 -16.262 30.990 -1.083 0.284 -1.220 H281 YWG 14 YWG H282 H11 H 0 0 N N N 26.127 -17.353 32.239 -1.072 1.315 0.231 H282 YWG 15 YWG H1 H22 H 0 1 N N N 21.838 -15.590 30.677 -3.147 1.785 1.515 H1 YWG 16 YWG H2 H23 H 0 1 N N N 23.307 -14.828 29.978 -3.936 2.408 0.046 H2 YWG 17 YWG H3 H24 H 0 1 N N N 22.556 -16.244 29.166 -4.874 1.462 1.227 H3 YWG 18 YWG H311 H25 H 0 0 N N N 26.515 -19.316 30.620 0.221 -0.414 1.450 H311 YWG 19 YWG H312 H26 H 0 0 N N N 27.389 -18.179 29.539 0.210 -1.446 -0.001 H312 YWG 20 YWG H322 H27 H 0 0 N N N 29.155 -19.037 30.860 1.415 0.317 -1.262 H322 YWG 21 YWG H321 H28 H 0 0 N N N 28.712 -17.549 31.764 1.426 1.348 0.189 H321 YWG 22 YWG H181 H36 H 0 0 N N N 26.080 -16.880 28.701 -3.117 -2.328 0.206 H181 YWG 23 YWG H331 H37 H 0 0 N N N 27.054 -19.521 32.820 2.578 -1.142 0.858 H331 YWG 24 YWG H352 H38 H 0 0 N N N 31.191 -20.076 33.684 5.847 -0.155 0.131 H352 YWG 25 YWG H351 H39 H 0 0 N N N 30.731 -19.080 32.343 4.906 -1.286 0.942 H351 YWG 26 YWG H4 H4 H 0 1 N Y N 24.467 -16.731 28.492 -2.408 -1.755 -1.185 H4 YWG 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YWG N18 C20 SING N N 1 YWG C29 C27 SING N N 2 YWG C20 C27 SING N N 3 YWG C20 C28 SING N N 4 YWG C31 C28 SING N N 5 YWG C31 C32 SING N N 6 YWG C27 O30 DOUB N N 7 YWG C32 N33 SING N N 8 YWG N33 C34 SING N N 9 YWG N35 C34 SING N N 10 YWG C34 O36 DOUB N N 11 YWG C20 H201 SING N N 12 YWG C28 H281 SING N N 13 YWG C28 H282 SING N N 14 YWG C29 H1 SING N N 15 YWG C29 H2 SING N N 16 YWG C29 H3 SING N N 17 YWG C31 H311 SING N N 18 YWG C31 H312 SING N N 19 YWG C32 H322 SING N N 20 YWG C32 H321 SING N N 21 YWG N18 H181 SING N N 22 YWG N33 H331 SING N N 23 YWG N35 H352 SING N N 24 YWG N35 H351 SING N N 25 YWG N18 H4 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YWG SMILES ACDLabs 12.01 "NC(=O)NCCCC(N)C(C)=O" YWG InChI InChI 1.03 "InChI=1S/C7H15N3O2/c1-5(11)6(8)3-2-4-10-7(9)12/h6H,2-4,8H2,1H3,(H3,9,10,12)/t6-/m0/s1" YWG InChIKey InChI 1.03 QCONBSSERWFISK-LURJTMIESA-N YWG SMILES_CANONICAL CACTVS 3.385 "CC(=O)[C@@H](N)CCCNC(N)=O" YWG SMILES CACTVS 3.385 "CC(=O)[CH](N)CCCNC(N)=O" YWG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)[C@H](CCCNC(=O)N)N" YWG SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)C(CCCNC(=O)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YWG "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(4S)-4-amino-5-oxohexyl]urea" YWG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(4~{S})-4-azanyl-5-oxidanylidene-hexyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YWG "Create component" 2021-04-01 RCSB YWG "Initial release" 2022-10-12 RCSB #