data_YWJ # _chem_comp.id YWJ _chem_comp.name "4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2021-07-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 470.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YWJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MBI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YWJ C10 C1 C 0 1 N N N 9.335 21.484 48.465 -0.164 2.218 -3.009 C10 YWJ 1 YWJ C13 C2 C 0 1 Y N N 10.622 27.114 50.173 -3.276 -0.041 -0.126 C13 YWJ 2 YWJ C15 C3 C 0 1 Y N N 12.431 27.925 51.240 -5.433 -0.627 0.026 C15 YWJ 3 YWJ C20 C4 C 0 1 Y N N 13.693 30.412 51.014 -7.034 -1.199 2.223 C20 YWJ 4 YWJ C21 C5 C 0 1 Y N N 12.578 30.112 50.239 -5.714 -0.854 2.419 C21 YWJ 5 YWJ C22 C6 C 0 1 Y N N 11.943 28.854 50.356 -4.900 -0.565 1.328 C22 YWJ 6 YWJ C26 C7 C 0 1 N N N 4.279 26.164 48.983 5.105 0.205 0.539 C26 YWJ 7 YWJ C28 C8 C 0 1 N N N 5.178 27.890 50.525 4.735 -2.263 0.433 C28 YWJ 8 YWJ C02 C9 C 0 1 N N N 3.491 23.944 49.891 3.978 1.546 2.294 C02 YWJ 9 YWJ C03 C10 C 0 1 N N S 4.552 25.027 49.966 3.792 0.439 1.288 C03 YWJ 10 YWJ C05 C11 C 0 1 N N N 6.994 24.572 50.435 1.453 0.562 0.618 C05 YWJ 11 YWJ C06 C12 C 0 1 N N S 8.343 23.996 50.021 0.377 0.950 -0.363 C06 YWJ 12 YWJ C07 C13 C 0 1 N N N 8.516 22.581 50.548 0.415 2.462 -0.591 C07 YWJ 13 YWJ C08 C14 C 0 1 N N N 9.718 21.978 49.859 -0.593 2.840 -1.679 C08 YWJ 14 YWJ C09 C15 C 0 1 N N N 10.254 20.748 50.601 -0.644 4.362 -1.820 C09 YWJ 15 YWJ C12 C16 C 0 1 N N N 9.526 26.162 49.723 -1.963 0.340 -0.664 C12 YWJ 16 YWJ C14 C17 C 0 1 Y N N 11.591 26.806 51.114 -4.387 -0.298 -0.867 C14 YWJ 17 YWJ C16 C18 C 0 1 Y N N 13.576 28.223 52.038 -6.781 -0.981 -0.156 C16 YWJ 18 YWJ C18 C19 C 0 1 N N N 14.104 27.582 54.270 -8.685 -1.410 -1.512 C18 YWJ 19 YWJ C19 C20 C 0 1 Y N N 14.200 29.471 51.907 -7.567 -1.263 0.944 C19 YWJ 20 YWJ C27 C21 C 0 1 N N S 5.181 27.458 49.166 4.951 -0.996 -0.398 C27 YWJ 21 YWJ C29 C22 C 0 1 N N N 5.542 29.293 50.658 4.859 -3.478 -0.496 C29 YWJ 22 YWJ C30 C23 C 0 1 N N N 4.537 30.204 50.050 6.309 -3.587 -0.967 C30 YWJ 23 YWJ C32 C24 C 0 1 N N N 4.599 28.512 48.104 6.190 -1.138 -1.234 C32 YWJ 24 YWJ C34 C25 C 0 1 N N N 4.089 22.555 49.783 4.738 1.286 3.569 C34 YWJ 25 YWJ N04 N1 N 0 1 N N N 5.837 24.455 49.568 2.746 0.816 0.335 N04 YWJ 26 YWJ N11 N2 N 0 1 N N N 9.371 24.923 50.468 -0.933 0.570 0.173 N11 YWJ 27 YWJ N23 N3 N 0 1 Y N N 10.844 28.345 49.736 -3.578 -0.201 1.214 N23 YWJ 28 YWJ N31 N4 N 0 1 N N N 4.268 29.922 48.588 6.772 -2.309 -1.495 N31 YWJ 29 YWJ O01 O1 O 0 1 N N N 2.299 24.146 49.894 3.518 2.641 2.078 O01 YWJ 30 YWJ O17 O2 O 0 1 N N N 14.074 27.250 52.914 -7.308 -1.044 -1.406 O17 YWJ 31 YWJ O24 O3 O 0 1 N N N 8.832 26.435 48.770 -1.806 0.447 -1.866 O24 YWJ 32 YWJ O25 O4 O 0 1 N N N 6.904 25.108 51.482 1.156 0.022 1.662 O25 YWJ 33 YWJ O33 O5 O 0 1 N N N 4.399 28.198 46.979 6.689 -0.134 -1.697 O33 YWJ 34 YWJ H103 H1 H 0 0 N N N 10.218 21.048 47.975 0.823 2.592 -3.283 H103 YWJ 35 YWJ H102 H2 H 0 0 N N N 8.548 20.720 48.550 -0.127 1.134 -2.909 H102 YWJ 36 YWJ H101 H3 H 0 0 N N N 8.963 22.328 47.866 -0.882 2.487 -3.784 H101 YWJ 37 YWJ H201 H4 H 0 0 N N N 14.167 31.378 50.923 -7.660 -1.422 3.074 H201 YWJ 38 YWJ H211 H5 H 0 0 N N N 12.195 30.844 49.544 -5.312 -0.808 3.420 H211 YWJ 39 YWJ H261 H6 H 0 0 N N N 3.227 26.465 49.097 5.353 1.091 -0.045 H261 YWJ 40 YWJ H262 H7 H 0 0 N N N 4.442 25.779 47.966 5.903 0.007 1.255 H262 YWJ 41 YWJ H282 H8 H 0 0 N N N 4.170 27.745 50.940 5.490 -2.322 1.217 H282 YWJ 42 YWJ H281 H9 H 0 0 N N N 5.899 27.282 51.091 3.741 -2.244 0.881 H281 YWJ 43 YWJ H031 H10 H 0 0 N N N 4.606 25.426 50.989 3.501 -0.476 1.805 H031 YWJ 44 YWJ H061 H11 H 0 0 N N N 8.365 23.950 48.922 0.545 0.435 -1.309 H061 YWJ 45 YWJ H071 H12 H 0 0 N N N 7.618 21.986 50.325 0.160 2.976 0.336 H071 YWJ 46 YWJ H072 H13 H 0 0 N N N 8.680 22.604 51.636 1.416 2.757 -0.906 H072 YWJ 47 YWJ H081 H14 H 0 0 N N N 10.515 22.731 49.776 -1.579 2.466 -1.405 H081 YWJ 48 YWJ H092 H15 H 0 0 N N N 10.551 21.035 51.621 -1.362 4.631 -2.594 H092 YWJ 49 YWJ H091 H16 H 0 0 N N N 9.469 19.979 50.650 -0.950 4.805 -0.872 H091 YWJ 50 YWJ H093 H17 H 0 0 N N N 11.127 20.348 50.064 0.343 4.735 -2.093 H093 YWJ 51 YWJ H141 H18 H 0 0 N N N 11.684 25.875 51.653 -4.458 -0.258 -1.943 H141 YWJ 52 YWJ H182 H19 H 0 0 N N N 14.513 26.739 54.846 -8.978 -1.423 -2.562 H182 YWJ 53 YWJ H183 H20 H 0 0 N N N 14.739 28.468 54.416 -8.832 -2.401 -1.082 H183 YWJ 54 YWJ H181 H21 H 0 0 N N N 13.083 27.801 54.616 -9.296 -0.686 -0.973 H181 YWJ 55 YWJ H191 H22 H 0 0 N N N 15.074 29.703 52.498 -8.603 -1.535 0.807 H191 YWJ 56 YWJ H271 H23 H 0 0 N N N 6.205 27.202 48.855 4.092 -0.839 -1.049 H271 YWJ 57 YWJ H291 H24 H 0 0 N N N 6.510 29.454 50.161 4.581 -4.382 0.046 H291 YWJ 58 YWJ H292 H25 H 0 0 N N N 5.634 29.533 51.727 4.201 -3.349 -1.355 H292 YWJ 59 YWJ H301 H26 H 0 0 N N N 4.903 31.237 50.143 6.940 -3.880 -0.128 H301 YWJ 60 YWJ H302 H27 H 0 0 N N N 3.592 30.099 50.604 6.378 -4.343 -1.750 H302 YWJ 61 YWJ H341 H28 H 0 0 N N N 3.281 21.812 49.712 4.769 2.197 4.166 H341 YWJ 62 YWJ H343 H29 H 0 0 N N N 4.720 22.497 48.884 4.241 0.498 4.134 H343 YWJ 63 YWJ H1 H30 H 0 1 N N N 4.700 22.349 50.674 5.755 0.975 3.329 H1 YWJ 64 YWJ H041 H31 H 0 0 N N N 5.919 23.980 48.692 2.984 1.248 -0.501 H041 YWJ 65 YWJ H111 H32 H 0 0 N N N 9.949 24.716 51.257 -1.058 0.484 1.131 H111 YWJ 66 YWJ H2 H33 H 0 1 N N N 10.290 28.825 49.056 -2.960 -0.078 1.951 H2 YWJ 67 YWJ H3 H34 H 0 1 N N N 3.895 30.618 47.975 7.552 -2.312 -2.072 H3 YWJ 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YWJ O33 C32 DOUB N N 1 YWJ C32 N31 SING N N 2 YWJ C32 C27 SING N N 3 YWJ C10 C08 SING N N 4 YWJ N31 C30 SING N N 5 YWJ O24 C12 DOUB N N 6 YWJ C26 C27 SING N N 7 YWJ C26 C03 SING N N 8 YWJ C27 C28 SING N N 9 YWJ N04 C03 SING N N 10 YWJ N04 C05 SING N N 11 YWJ C12 C13 SING N N 12 YWJ C12 N11 SING N N 13 YWJ N23 C13 SING Y N 14 YWJ N23 C22 SING Y N 15 YWJ C34 C02 SING N N 16 YWJ C08 C07 SING N N 17 YWJ C08 C09 SING N N 18 YWJ C02 O01 DOUB N N 19 YWJ C02 C03 SING N N 20 YWJ C06 C05 SING N N 21 YWJ C06 N11 SING N N 22 YWJ C06 C07 SING N N 23 YWJ C30 C29 SING N N 24 YWJ C13 C14 DOUB Y N 25 YWJ C21 C22 DOUB Y N 26 YWJ C21 C20 SING Y N 27 YWJ C22 C15 SING Y N 28 YWJ C05 O25 DOUB N N 29 YWJ C28 C29 SING N N 30 YWJ C20 C19 DOUB Y N 31 YWJ C14 C15 SING Y N 32 YWJ C15 C16 DOUB Y N 33 YWJ C19 C16 SING Y N 34 YWJ C16 O17 SING N N 35 YWJ O17 C18 SING N N 36 YWJ C10 H103 SING N N 37 YWJ C10 H102 SING N N 38 YWJ C10 H101 SING N N 39 YWJ C20 H201 SING N N 40 YWJ C21 H211 SING N N 41 YWJ C26 H261 SING N N 42 YWJ C26 H262 SING N N 43 YWJ C28 H282 SING N N 44 YWJ C28 H281 SING N N 45 YWJ C03 H031 SING N N 46 YWJ C06 H061 SING N N 47 YWJ C07 H071 SING N N 48 YWJ C07 H072 SING N N 49 YWJ C08 H081 SING N N 50 YWJ C09 H092 SING N N 51 YWJ C09 H091 SING N N 52 YWJ C09 H093 SING N N 53 YWJ C14 H141 SING N N 54 YWJ C18 H182 SING N N 55 YWJ C18 H183 SING N N 56 YWJ C18 H181 SING N N 57 YWJ C19 H191 SING N N 58 YWJ C27 H271 SING N N 59 YWJ C29 H291 SING N N 60 YWJ C29 H292 SING N N 61 YWJ C30 H301 SING N N 62 YWJ C30 H302 SING N N 63 YWJ C34 H341 SING N N 64 YWJ C34 H343 SING N N 65 YWJ C34 H1 SING N N 66 YWJ N04 H041 SING N N 67 YWJ N11 H111 SING N N 68 YWJ N23 H2 SING N N 69 YWJ N31 H3 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YWJ SMILES ACDLabs 12.01 "COc1cccc2[NH]c(cc12)C(=O)NC(CC(C)C)C(=O)NC(CC1CCCNC1=O)C(C)=O" YWJ InChI InChI 1.03 "InChI=1S/C25H34N4O5/c1-14(2)11-20(24(32)28-19(15(3)30)12-16-7-6-10-26-23(16)31)29-25(33)21-13-17-18(27-21)8-5-9-22(17)34-4/h5,8-9,13-14,16,19-20,27H,6-7,10-12H2,1-4H3,(H,26,31)(H,28,32)(H,29,33)/t16-,19-,20-/m0/s1" YWJ InChIKey InChI 1.03 HDPZWFCIPQRUTJ-VDGAXYAQSA-N YWJ SMILES_CANONICAL CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCCNC3=O)C(C)=O" YWJ SMILES CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCCNC3=O)C(C)=O" YWJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C(=O)C)NC(=O)c2cc3c([nH]2)cccc3OC" YWJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C(=O)C)NC(=O)c2cc3c([nH]2)cccc3OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YWJ "SYSTEMATIC NAME" ACDLabs 12.01 "4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide" YWJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-methoxy-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-3-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YWJ "Create component" 2021-04-01 RCSB YWJ "Initial release" 2021-07-21 RCSB ##