data_YWN # _chem_comp.id YWN _chem_comp.name "2-[(2R,3S,4R,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-pentyl-pyrrolidin-2-yl]-N-methyl-ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H26 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-05 _chem_comp.pdbx_modified_date 2015-11-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 274.357 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YWN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ABH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YWN C1 C1 C 0 1 N N N 27.212 0.638 288.949 0.726 -0.491 -0.338 C1 YWN 1 YWN N2 N2 N 0 1 N N N 27.451 1.378 290.206 -0.553 -0.277 0.353 N2 YWN 2 YWN C3 C3 C 0 1 N N R 28.920 1.561 290.441 -1.377 0.724 -0.356 C3 YWN 3 YWN C4 C4 C 0 1 N N S 29.208 3.045 290.443 -2.839 0.258 -0.141 C4 YWN 4 YWN C5 C5 C 0 1 N N R 28.077 3.571 289.593 -2.689 -1.285 -0.216 C5 YWN 5 YWN C6 C6 C 0 1 N N R 26.901 2.748 290.090 -1.318 -1.534 0.447 C6 YWN 6 YWN C7 C7 C 0 1 N N N 27.796 -0.761 288.872 1.764 -1.010 0.659 C7 YWN 7 YWN C8 C8 C 0 1 N N N 27.508 -1.327 287.496 3.106 -1.197 -0.052 C8 YWN 8 YWN C9 C9 C 0 1 N N N 27.787 -2.815 287.480 4.143 -1.717 0.945 C9 YWN 9 YWN C10 C10 C 0 1 N N N 27.536 -3.409 286.108 5.485 -1.904 0.234 C10 YWN 10 YWN C11 C11 C 0 1 N N N 29.444 0.832 291.672 -1.166 2.113 0.250 C11 YWN 11 YWN C12 C12 C 0 1 N N N 28.524 0.866 292.886 0.129 2.691 -0.257 C12 YWN 12 YWN O13 O13 O 0 1 N N N 27.301 0.757 292.775 0.689 2.184 -1.206 O13 YWN 13 YWN N14 N14 N 0 1 N N N 29.149 0.939 294.064 0.666 3.772 0.343 N14 YWN 14 YWN C15 C15 C 0 1 N N N 28.432 0.856 295.328 1.925 4.334 -0.150 C15 YWN 15 YWN C18 C18 C 0 1 N N N 25.643 2.920 289.212 -0.578 -2.651 -0.292 C18 YWN 16 YWN O19 O19 O 0 1 N N N 25.885 2.706 287.806 -0.628 -2.406 -1.699 O19 YWN 17 YWN O20 O20 O 0 1 N N N 27.882 4.969 289.734 -3.731 -1.929 0.520 O20 YWN 18 YWN O21 O21 O 0 1 N N N 29.200 3.662 291.740 -3.322 0.664 1.141 O21 YWN 19 YWN H11C H11C H 0 0 N N N 26.124 0.555 288.810 0.591 -1.221 -1.135 H11C YWN 20 YWN H12C H12C H 0 0 N N N 27.643 1.227 288.126 1.071 0.452 -0.763 H12C YWN 21 YWN H71C H71C H 0 0 N N N 28.883 -0.719 289.036 1.880 -0.292 1.471 H71C YWN 22 YWN H72C H72C H 0 0 N N N 27.334 -1.399 289.640 1.431 -1.966 1.065 H72C YWN 23 YWN H3 H3 H 0 1 N N N 29.442 1.134 289.572 -1.134 0.732 -1.419 H3 YWN 24 YWN H6 H6 H 0 1 N N N 26.648 3.103 291.100 -1.456 -1.807 1.493 H6 YWN 25 YWN H4 H4 H 0 1 N N N 30.165 3.232 289.934 -3.487 0.626 -0.935 H4 YWN 26 YWN H111 H111 H 0 0 N N N 29.609 -0.221 291.399 -1.992 2.764 -0.037 H111 YWN 27 YWN H112 H112 H 0 0 N N N 30.402 1.291 291.958 -1.128 2.033 1.336 H112 YWN 28 YWN H5 H5 H 0 1 N N N 28.271 3.317 288.540 -2.683 -1.621 -1.253 H5 YWN 29 YWN H21 H21 H 0 1 N N N 29.389 4.589 291.651 -4.233 0.394 1.322 H21 YWN 30 YWN H20 H20 H 0 1 N N N 27.162 5.246 289.180 -4.620 -1.742 0.190 H20 YWN 31 YWN H181 H181 H 0 0 N N N 24.884 2.198 289.548 0.461 -2.677 0.035 H181 YWN 32 YWN H182 H182 H 0 0 N N N 25.262 3.943 289.347 -1.052 -3.608 -0.073 H182 YWN 33 YWN H81C H81C H 0 0 N N N 26.452 -1.152 287.244 2.990 -1.916 -0.863 H81C YWN 34 YWN H82C H82C H 0 0 N N N 28.150 -0.828 286.755 3.438 -0.242 -0.457 H82C YWN 35 YWN H91C H91C H 0 0 N N N 28.838 -2.985 287.757 4.259 -0.999 1.757 H91C YWN 36 YWN H92C H92C H 0 0 N N N 27.130 -3.310 288.210 3.810 -2.673 1.351 H92C YWN 37 YWN H101 H101 H 0 0 N N N 27.747 -4.488 286.131 5.369 -2.622 -0.577 H101 YWN 38 YWN H102 H102 H 0 0 N N N 26.485 -3.247 285.825 5.818 -0.949 -0.171 H102 YWN 39 YWN H103 H103 H 0 0 N N N 28.193 -2.922 285.372 6.224 -2.275 0.945 H103 YWN 40 YWN H14 H14 H 0 1 N N N 30.142 1.054 294.078 0.218 4.178 1.102 H14 YWN 41 YWN H151 H151 H 0 0 N N N 29.146 0.939 296.161 2.710 3.581 -0.085 H151 YWN 42 YWN H152 H152 H 0 0 N N N 27.700 1.675 295.389 1.804 4.643 -1.189 H152 YWN 43 YWN H153 H153 H 0 0 N N N 27.908 -0.109 295.389 2.200 5.198 0.456 H153 YWN 44 YWN H19 H19 H 0 1 N N N 25.076 2.826 287.323 -0.178 -3.076 -2.231 H19 YWN 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YWN C1 N2 SING N N 1 YWN C1 C7 SING N N 2 YWN N2 C3 SING N N 3 YWN N2 C6 SING N N 4 YWN C3 C4 SING N N 5 YWN C3 C11 SING N N 6 YWN C4 C5 SING N N 7 YWN C4 O21 SING N N 8 YWN C5 C6 SING N N 9 YWN C5 O20 SING N N 10 YWN C6 C18 SING N N 11 YWN C7 C8 SING N N 12 YWN C8 C9 SING N N 13 YWN C9 C10 SING N N 14 YWN C11 C12 SING N N 15 YWN C12 O13 DOUB N N 16 YWN C12 N14 SING N N 17 YWN N14 C15 SING N N 18 YWN C18 O19 SING N N 19 YWN C1 H11C SING N N 20 YWN C1 H12C SING N N 21 YWN C7 H71C SING N N 22 YWN C7 H72C SING N N 23 YWN C3 H3 SING N N 24 YWN C6 H6 SING N N 25 YWN C4 H4 SING N N 26 YWN C11 H111 SING N N 27 YWN C11 H112 SING N N 28 YWN C5 H5 SING N N 29 YWN O21 H21 SING N N 30 YWN O20 H20 SING N N 31 YWN C18 H181 SING N N 32 YWN C18 H182 SING N N 33 YWN C8 H81C SING N N 34 YWN C8 H82C SING N N 35 YWN C9 H91C SING N N 36 YWN C9 H92C SING N N 37 YWN C10 H101 SING N N 38 YWN C10 H102 SING N N 39 YWN C10 H103 SING N N 40 YWN N14 H14 SING N N 41 YWN C15 H151 SING N N 42 YWN C15 H152 SING N N 43 YWN C15 H153 SING N N 44 YWN O19 H19 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YWN InChI InChI 1.03 "InChI=1S/C13H26N2O4/c1-3-4-5-6-15-9(7-11(17)14-2)12(18)13(19)10(15)8-16/h9-10,12-13,16,18-19H,3-8H2,1-2H3,(H,14,17)/t9-,10-,12+,13-/m1/s1" YWN InChIKey InChI 1.03 NZYWNYJYZSBEBH-VCDKRKBESA-N YWN SMILES_CANONICAL CACTVS 3.385 "CCCCCN1[C@H](CO)[C@@H](O)[C@@H](O)[C@H]1CC(=O)NC" YWN SMILES CACTVS 3.385 "CCCCCN1[CH](CO)[CH](O)[CH](O)[CH]1CC(=O)NC" YWN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCN1[C@@H]([C@@H]([C@@H]([C@H]1CO)O)O)CC(=O)NC" YWN SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCN1C(C(C(C1CO)O)O)CC(=O)NC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YWN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(2R,3S,4R,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-pentyl-pyrrolidin-2-yl]-N-methyl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YWN "Create component" 2015-08-05 EBI YWN "Initial release" 2015-11-18 RCSB #