data_YWV # _chem_comp.id YWV _chem_comp.name "[Ru2(DPhF)(Formate)]" _chem_comp.type "D-beta-peptide, C-gamma linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 N2 O2 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-22 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 444.413 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YWV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YWV N1 N1 N 0 1 N N N -34.581 -13.404 -20.392 -34.581 -13.404 -20.392 N1 YWV 1 YWV RU1 RU1 RU 0 0 N N N -34.540 -11.379 -20.128 -34.540 -11.379 -20.128 RU1 YWV 2 YWV RU2 RU2 RU 0 0 N N N -35.827 -11.102 -21.997 -35.827 -11.102 -21.997 RU2 YWV 3 YWV O1 O1 O 0 1 N N N -36.235 -11.587 -18.990 -36.235 -11.587 -18.990 O1 YWV 4 YWV O2 O2 O 0 1 N N N -37.498 -11.109 -20.810 -37.498 -11.109 -20.810 O2 YWV 5 YWV N2 N2 N 0 1 N N N -35.985 -13.135 -22.164 -35.985 -13.135 -22.164 N2 YWV 6 YWV C1 C1 C 0 1 N N N -37.401 -11.308 -19.539 -37.401 -11.308 -19.539 C1 YWV 7 YWV C7 C2 C 0 1 N N N -35.228 -13.915 -21.405 -35.228 -13.915 -21.405 C7 YWV 8 YWV C20 C3 C 0 1 Y N N -36.119 -15.089 -23.685 -36.119 -15.089 -23.685 C20 YWV 9 YWV C9 C4 C 0 1 Y N N -32.449 -14.057 -19.435 -32.449 -14.057 -19.435 C9 YWV 10 YWV C10 C5 C 0 1 Y N N -31.670 -14.939 -18.739 -31.670 -14.939 -18.739 C10 YWV 11 YWV C15 C6 C 0 1 Y N N -36.574 -13.860 -23.229 -36.574 -13.860 -23.229 C15 YWV 12 YWV C8 C7 C 0 1 Y N N -33.755 -14.318 -19.619 -33.755 -14.318 -19.619 C8 YWV 13 YWV C13 C8 C 0 1 Y N N -34.323 -15.501 -19.048 -34.323 -15.501 -19.048 C13 YWV 14 YWV C16 C9 C 0 1 Y N N -37.668 -13.501 -24.015 -37.668 -13.501 -24.015 C16 YWV 15 YWV C17 C10 C 0 1 Y N N -38.345 -13.990 -25.096 -38.345 -13.990 -25.096 C17 YWV 16 YWV C11 C11 C 0 1 Y N N -32.206 -16.079 -18.194 -32.206 -16.079 -18.194 C11 YWV 17 YWV C12 C12 C 0 1 Y N N -33.558 -16.394 -18.357 -33.558 -16.394 -18.357 C12 YWV 18 YWV C18 C13 C 0 1 Y N N -37.835 -15.200 -25.478 -37.835 -15.200 -25.478 C18 YWV 19 YWV C19 C14 C 0 1 Y N N -36.778 -15.718 -24.761 -36.778 -15.718 -24.761 C19 YWV 20 YWV H1 H1 H 0 1 N N N -37.769 -10.395 -19.049 -37.769 -10.395 -19.049 H1 YWV 21 YWV H2 H2 H 0 1 N N N -38.070 -12.148 -19.300 -38.070 -12.148 -19.300 H2 YWV 22 YWV H3 H3 H 0 1 N N N -35.884 -14.700 -21.001 -35.884 -14.700 -21.001 H3 YWV 23 YWV H4 H4 H 0 1 N N N -34.476 -14.370 -22.066 -34.476 -14.370 -22.066 H4 YWV 24 YWV H5 H5 H 0 1 N N N -35.266 -15.560 -23.219 -35.266 -15.560 -23.219 H5 YWV 25 YWV H6 H6 H 0 1 N N N -32.016 -13.152 -19.836 -32.016 -13.153 -19.836 H6 YWV 26 YWV H7 H7 H 0 1 N N N -30.616 -14.736 -18.616 -30.617 -14.736 -18.616 H7 YWV 27 YWV H8 H8 H 0 1 N N N -35.380 -15.691 -19.167 -35.380 -15.691 -19.167 H8 YWV 28 YWV H9 H9 H 0 1 N N N -38.103 -12.574 -23.672 -38.104 -12.574 -23.672 H9 YWV 29 YWV H10 H10 H 0 1 N N N -39.170 -13.490 -25.582 -39.170 -13.490 -25.582 H10 YWV 30 YWV H11 H11 H 0 1 N N N -31.571 -16.745 -17.629 -31.571 -16.745 -17.629 H11 YWV 31 YWV H12 H12 H 0 1 N N N -33.978 -17.304 -17.954 -33.978 -17.304 -17.954 H12 YWV 32 YWV H13 H13 H 0 1 N N N -38.250 -15.736 -26.319 -38.250 -15.736 -26.319 H13 YWV 33 YWV H14 H14 H 0 1 N N N -36.422 -16.696 -25.050 -36.422 -16.696 -25.050 H14 YWV 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YWV C18 C17 DOUB Y N 1 YWV C18 C19 SING Y N 2 YWV C17 C16 SING Y N 3 YWV C19 C20 DOUB Y N 4 YWV C16 C15 DOUB Y N 5 YWV C20 C15 SING Y N 6 YWV C15 N2 SING N N 7 YWV N2 RU2 SING N N 8 YWV N2 C7 SING N N 9 YWV RU2 O2 SING N N 10 YWV RU2 RU1 SING N N 11 YWV C7 N1 SING N N 12 YWV O2 C1 SING N N 13 YWV N1 RU1 SING N N 14 YWV N1 C8 SING N N 15 YWV RU1 O1 SING N N 16 YWV C8 C9 DOUB Y N 17 YWV C8 C13 SING Y N 18 YWV C1 O1 SING N N 19 YWV C9 C10 SING Y N 20 YWV C13 C12 DOUB Y N 21 YWV C10 C11 DOUB Y N 22 YWV C12 C11 SING Y N 23 YWV C1 H1 SING N N 24 YWV C1 H2 SING N N 25 YWV C7 H3 SING N N 26 YWV C7 H4 SING N N 27 YWV C20 H5 SING N N 28 YWV C9 H6 SING N N 29 YWV C10 H7 SING N N 30 YWV C13 H8 SING N N 31 YWV C16 H9 SING N N 32 YWV C17 H10 SING N N 33 YWV C11 H11 SING N N 34 YWV C12 H12 SING N N 35 YWV C18 H13 SING N N 36 YWV C19 H14 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YWV InChI InChI 1.06 "InChI=1S/C13H12N2.CH2O2.2Ru/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;2-1-3;;/h1-10H,11H2;1H2;;/q2*-2;2*+2" YWV InChIKey InChI 1.06 CVNAOZKWKIHKRL-UHFFFAOYSA-N YWV SMILES_CANONICAL CACTVS 3.385 "C1O[Ru]N(CN([Ru]O1)c2ccccc2)c3ccccc3" YWV SMILES CACTVS 3.385 "C1O[Ru]N(CN([Ru]O1)c2ccccc2)c3ccccc3" YWV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]3[Ru]2OCO3)c4ccccc4" YWV SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]3[Ru]2OCO3)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id YWV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6,8-diphenyl-2,4-dioxa-6,8-diaza-1$l^{3},5$l^{3}-diruthenabicyclo[3.3.0]octane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YWV "Create component" 2023-06-22 PDBE YWV "Modify coordinates" 2023-07-05 PDBE YWV "Modify name" 2023-07-07 PDBE YWV "Initial release" 2023-09-13 RCSB #