data_YX0 # _chem_comp.id YX0 _chem_comp.name "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl alpha-L-fucopyranoside" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H19 N O7" _chem_comp.mon_nstd_parent_comp_id FUC _chem_comp.pdbx_synonyms ;[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside; [(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl alpha-L-fucoside; [(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl L-fucoside; [(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl fucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-05-22 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 289.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YX0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VUC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 YX0 "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside" PDB ? 2 YX0 "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl alpha-L-fucoside" PDB ? 3 YX0 "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl L-fucoside" PDB ? 4 YX0 "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl fucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YX0 C1 C1 C 0 1 N N R 38.660 4.573 -3.429 -1.741 -0.448 -1.205 C1 YX0 1 YX0 C2 C2 C 0 1 N N S 37.339 4.326 -2.730 -2.657 -1.400 -0.432 C2 YX0 2 YX0 C3 C3 C 0 1 N N R 36.534 3.323 -3.527 -2.903 -0.834 0.970 C3 YX0 3 YX0 C4 C4 C 0 1 N N S 37.302 2.043 -3.767 -3.499 0.572 0.843 C4 YX0 4 YX0 C5 C5 C 0 1 N N S 38.662 2.378 -4.402 -2.550 1.447 0.021 C5 YX0 5 YX0 C6 C6 C 0 1 N N N 39.537 1.131 -4.539 -3.166 2.836 -0.161 C6 YX0 6 YX0 O1 O1 O 0 1 N N N 38.389 5.181 -4.697 -0.477 -0.362 -0.544 O1 YX0 7 YX0 O2 O2 O 0 1 N N N 36.550 5.529 -2.576 -2.034 -2.682 -0.326 O2 YX0 8 YX0 O3 O3 O 0 1 N N N 35.338 3.030 -2.771 -3.816 -1.678 1.674 O3 YX0 9 YX0 O4 O4 O 0 1 N N N 37.483 1.456 -2.452 -4.766 0.496 0.189 O4 YX0 10 YX0 O5 O5 O 0 1 N N N 39.368 3.335 -3.621 -2.340 0.848 -1.259 O5 YX0 11 YX0 "O5'" "O5'" O 0 1 N N N 42.858 8.526 -1.818 5.730 -0.922 -0.903 "O5'" YX0 12 YX0 "C5'" "C5'" C 0 1 N N N 41.833 9.093 -2.201 5.228 -0.240 0.165 "C5'" YX0 13 YX0 "C6'" "C6'" C 0 1 N N N 41.452 10.478 -1.765 6.120 0.091 1.334 "C6'" YX0 14 YX0 "C4'" "C4'" C 0 1 N N N 40.897 8.445 -3.173 3.937 0.138 0.175 "C4'" YX0 15 YX0 "C3'" "C3'" C 0 1 N N N 40.951 7.123 -3.642 2.932 -0.100 -0.875 "C3'" YX0 16 YX0 "C2'" "C2'" C 0 1 N N N 39.902 7.007 -4.534 1.782 0.439 -0.464 "C2'" YX0 17 YX0 "C1'" "C1'" C 0 1 N N N 39.485 5.770 -5.289 0.495 0.416 -1.247 "C1'" YX0 18 YX0 O O O 0 1 N N N 39.213 8.148 -4.621 1.933 1.005 0.748 O YX0 19 YX0 N N N 0 1 N N N 39.849 9.097 -3.754 3.268 0.834 1.188 N YX0 20 YX0 H1 H1 H 0 1 N N N 39.288 5.234 -2.814 -1.597 -0.825 -2.218 H1 YX0 21 YX0 H2 H2 H 0 1 N N N 37.573 3.948 -1.724 -3.607 -1.498 -0.957 H2 YX0 22 YX0 H3 H3 H 0 1 N N N 36.299 3.751 -4.513 -1.959 -0.782 1.513 H3 YX0 23 YX0 HO2 HA H 0 1 N Y N 36.377 5.679 -1.654 -1.844 -3.099 -1.178 HO2 YX0 24 YX0 H4 H4 H 0 1 N N N 36.779 1.354 -4.447 -3.625 1.004 1.836 H4 YX0 25 YX0 HO3 HB H 0 1 N Y N 35.554 2.966 -1.848 -3.505 -2.587 1.785 HO3 YX0 26 YX0 H5 H5 H 0 1 N N N 38.452 2.790 -5.400 -1.596 1.538 0.541 H5 YX0 27 YX0 HO4 HC H 0 1 N Y N 37.523 0.510 -2.530 -5.202 1.351 0.075 HO4 YX0 28 YX0 H61 H6C1 H 0 1 N N N 39.747 0.945 -5.603 -3.327 3.293 0.815 H61 YX0 29 YX0 H62 H6C2 H 0 1 N N N 40.483 1.286 -4.000 -2.490 3.460 -0.747 H62 YX0 30 YX0 H63 H6C3 H 0 1 N N N 39.010 0.265 -4.113 -4.119 2.745 -0.682 H63 YX0 31 YX0 "H1'1" "H1'1" H 0 0 N N N 40.319 5.053 -5.292 0.674 -0.026 -2.228 "H1'1" YX0 32 YX0 "H1'2" "H1'2" H 0 0 N N N 39.219 6.057 -6.317 0.125 1.434 -1.369 "H1'2" YX0 33 YX0 "H5'" "H5'" H 0 1 N N N 43.435 8.380 -2.558 5.083 -1.088 -1.603 "H5'" YX0 34 YX0 "H6'1" "H6'1" H 0 0 N N N 41.359 10.505 -0.669 6.591 1.060 1.168 "H6'1" YX0 35 YX0 "H6'2" "H6'2" H 0 0 N N N 42.228 11.189 -2.085 5.524 0.129 2.246 "H6'2" YX0 36 YX0 "H6'3" "H6'3" H 0 0 N N N 40.490 10.754 -2.222 6.888 -0.675 1.433 "H6'3" YX0 37 YX0 "H3'" "H3'" H 0 1 N N N 41.662 6.359 -3.365 3.096 -0.617 -1.808 "H3'" YX0 38 YX0 H H H 0 1 N N N 39.208 9.420 -3.058 3.646 1.142 2.027 H YX0 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YX0 C1 C2 SING N N 1 YX0 C1 O1 SING N N 2 YX0 C1 O5 SING N N 3 YX0 C2 C3 SING N N 4 YX0 C2 O2 SING N N 5 YX0 C3 C4 SING N N 6 YX0 C3 O3 SING N N 7 YX0 C4 C5 SING N N 8 YX0 C4 O4 SING N N 9 YX0 C5 C6 SING N N 10 YX0 C5 O5 SING N N 11 YX0 O1 "C1'" SING N N 12 YX0 "O5'" "C5'" SING N N 13 YX0 "C5'" "C6'" SING N N 14 YX0 "C5'" "C4'" DOUB N N 15 YX0 "C4'" "C3'" SING N N 16 YX0 "C4'" N SING N N 17 YX0 "C3'" "C2'" DOUB N N 18 YX0 "C2'" "C1'" SING N N 19 YX0 "C2'" O SING N N 20 YX0 O N SING N N 21 YX0 C1 H1 SING N N 22 YX0 C2 H2 SING N N 23 YX0 C3 H3 SING N N 24 YX0 O2 HO2 SING N N 25 YX0 C4 H4 SING N N 26 YX0 O3 HO3 SING N E 27 YX0 C5 H5 SING N N 28 YX0 O4 HO4 SING N N 29 YX0 C6 H61 SING N N 30 YX0 C6 H62 SING N N 31 YX0 C6 H63 SING N N 32 YX0 "C1'" "H1'1" SING N N 33 YX0 "C1'" "H1'2" SING N N 34 YX0 "O5'" "H5'" SING N N 35 YX0 "C6'" "H6'1" SING N N 36 YX0 "C6'" "H6'2" SING N N 37 YX0 "C6'" "H6'3" SING N N 38 YX0 "C3'" "H3'" SING N N 39 YX0 N H SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YX0 SMILES ACDLabs 10.04 "O(CC=1ONC(=C(\O)C)\C=1)C2OC(C(O)C(O)C2O)C" YX0 SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1O[C@@H](OCC2=C\C(NO2)=C(C)/O)[C@@H](O)[C@H](O)[C@@H]1O" YX0 SMILES CACTVS 3.341 "C[CH]1O[CH](OCC2=CC(NO2)=C(C)O)[CH](O)[CH](O)[CH]1O" YX0 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OCC2=C/C(=C(/C)\O)/NO2)O)O)O" YX0 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)OCC2=CC(=C(C)O)NO2)O)O)O" YX0 InChI InChI 1.03 "InChI=1S/C12H19NO7/c1-5(14)8-3-7(20-13-8)4-18-12-11(17)10(16)9(15)6(2)19-12/h3,6,9-17H,4H2,1-2H3/b8-5+/t6-,9+,10+,11-,12+/m0/s1" YX0 InChIKey InChI 1.03 DQRDRRBASDQFKR-AWJQDWPASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YX0 "SYSTEMATIC NAME" ACDLabs 10.04 "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside" YX0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4R,5S,6S)-2-[[(3E)-3-(1-hydroxyethylidene)-1,2-oxazol-5-yl]methoxy]-6-methyl-oxane-3,4,5-triol" # _pdbx_chem_comp_related.comp_id YX0 _pdbx_chem_comp_related.related_comp_id FUC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 YX0 C1 FUC C1 "Carbohydrate core" 2 YX0 C2 FUC C2 "Carbohydrate core" 3 YX0 C3 FUC C3 "Carbohydrate core" 4 YX0 C4 FUC C4 "Carbohydrate core" 5 YX0 C5 FUC C5 "Carbohydrate core" 6 YX0 C6 FUC C6 "Carbohydrate core" 7 YX0 O1 FUC O1 "Carbohydrate core" 8 YX0 O2 FUC O2 "Carbohydrate core" 9 YX0 O3 FUC O3 "Carbohydrate core" 10 YX0 O4 FUC O4 "Carbohydrate core" 11 YX0 O5 FUC O5 "Carbohydrate core" 12 YX0 H1 FUC H1 "Carbohydrate core" 13 YX0 H2 FUC H2 "Carbohydrate core" 14 YX0 H3 FUC H3 "Carbohydrate core" 15 YX0 H4 FUC H4 "Carbohydrate core" 16 YX0 H5 FUC H5 "Carbohydrate core" 17 YX0 H61 FUC H61 "Carbohydrate core" 18 YX0 H62 FUC H62 "Carbohydrate core" 19 YX0 H63 FUC H63 "Carbohydrate core" 20 YX0 HO2 FUC HO2 "Carbohydrate core" 21 YX0 HO3 FUC HO3 "Carbohydrate core" 22 YX0 HO4 FUC HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support YX0 "CARBOHYDRATE ISOMER" L PDB ? YX0 "CARBOHYDRATE RING" pyranose PDB ? YX0 "CARBOHYDRATE ANOMER" alpha PDB ? YX0 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YX0 "Create component" 2008-05-22 EBI YX0 "Modify descriptor" 2011-06-04 RCSB YX0 "Other modification" 2020-07-03 RCSB YX0 "Modify parent residue" 2020-07-17 RCSB YX0 "Modify name" 2020-07-17 RCSB YX0 "Modify synonyms" 2020-07-17 RCSB YX0 "Modify internal type" 2020-07-17 RCSB YX0 "Modify linking type" 2020-07-17 RCSB YX0 "Modify atom id" 2020-07-17 RCSB YX0 "Modify component atom id" 2020-07-17 RCSB YX0 "Modify leaving atom flag" 2020-07-17 RCSB ##