data_YX9 # _chem_comp.id YX9 _chem_comp.name "(5S)-5-[(3R)-4,4-difluoro-3-hydroxy-4-phenylbutyl]-1-[6-(1H-tetrazol-5-yl)hexyl]pyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H29 F2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-02 _chem_comp.pdbx_modified_date 2023-12-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.484 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YX9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GCM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YX9 C10 C1 C 0 1 N N R N N N 122.948 135.738 96.946 -3.513 0.230 -0.074 C10 YX9 1 YX9 C13 C2 C 0 1 N N N N N N 123.212 135.975 94.391 -1.687 -1.463 -0.273 C13 YX9 2 YX9 C17 C3 C 0 1 N N N N N N 123.828 136.536 91.213 -0.816 -4.999 0.305 C17 YX9 3 YX9 C20 C4 C 0 1 N N N N N N 120.438 135.305 92.261 1.194 -2.046 -0.877 C20 YX9 4 YX9 C21 C5 C 0 1 N N N N N N 119.381 136.439 92.428 2.328 -1.800 0.120 C21 YX9 5 YX9 C22 C6 C 0 1 N N N N N N 118.172 136.385 91.425 3.327 -0.808 -0.480 C22 YX9 6 YX9 C24 C7 C 0 1 N N N N N N 117.207 137.257 89.225 5.460 0.430 -0.083 C24 YX9 7 YX9 C26 C8 C 0 1 Y N N N N N 116.940 135.735 87.247 7.579 1.653 0.324 C26 YX9 8 YX9 C01 C9 C 0 1 Y N N N N N 122.246 134.016 101.532 -5.535 4.242 -0.323 C01 YX9 9 YX9 C02 C10 C 0 1 Y N N N N N 123.569 133.966 101.753 -6.632 3.987 -1.123 C02 YX9 10 YX9 C03 C11 C 0 1 Y N N N N N 124.413 134.403 100.776 -7.079 2.689 -1.290 C03 YX9 11 YX9 C04 C12 C 0 1 Y N N N N N 123.917 134.887 99.519 -6.428 1.647 -0.657 C04 YX9 12 YX9 C05 C13 C 0 1 Y N N N N N 122.597 134.948 99.307 -5.331 1.903 0.144 C05 YX9 13 YX9 C06 C14 C 0 1 Y N N N N N 121.744 134.516 100.282 -4.880 3.200 0.306 C06 YX9 14 YX9 C07 C15 C 0 1 N N N N N N 121.995 135.452 98.038 -4.621 0.767 0.834 C07 YX9 15 YX9 O11 O1 O 0 1 N N N N N N 123.374 137.082 96.985 -4.068 -0.131 -1.340 O11 YX9 16 YX9 C12 C16 C 0 1 N N N N N N 122.250 135.649 95.562 -2.875 -1.001 0.573 C12 YX9 17 YX9 C14 C17 C 0 1 N N S N N N 122.550 136.799 93.231 -0.968 -2.610 0.441 C14 YX9 18 YX9 N15 N1 N 0 1 N N N N N N 121.792 135.904 92.145 0.237 -2.996 -0.303 N15 YX9 19 YX9 C16 C18 C 0 1 N N N N N N 122.743 135.836 90.892 0.350 -4.332 -0.390 C16 YX9 20 YX9 C18 C19 C 0 1 N N N N N N 123.467 137.442 92.562 -1.861 -3.870 0.461 C18 YX9 21 YX9 O19 O2 O 0 1 N N N N N N 122.571 135.303 89.924 1.256 -4.918 -0.944 O19 YX9 22 YX9 C23 C20 C 0 1 N N N N N N 118.316 137.376 90.315 4.462 -0.562 0.517 C23 YX9 23 YX9 C25 C21 C 0 1 N N N N N N 117.051 135.851 88.759 6.595 0.676 0.914 C25 YX9 24 YX9 N27 N2 N 0 1 Y N N N N N 117.766 134.963 86.406 7.993 2.809 0.875 N27 YX9 25 YX9 N28 N3 N 0 1 Y N N N N N 117.331 135.140 85.194 8.832 3.344 0.053 N28 YX9 26 YX9 N29 N4 N 0 1 Y N N N N N 116.265 135.984 85.209 8.954 2.576 -0.973 N29 YX9 27 YX9 N30 N5 N 0 1 Y N N N N N 116.022 136.341 86.472 8.203 1.539 -0.824 N30 YX9 28 YX9 F08 F1 F 0 1 N N N N N N 121.205 136.539 98.363 -5.535 -0.256 1.109 F08 YX9 29 YX9 F09 F2 F 0 1 N N N N N N 121.200 134.407 97.636 -4.061 1.226 2.032 F09 YX9 30 YX9 H1 H1 H 0 1 N N N N N N 123.798 135.040 96.978 -2.754 1.000 -0.216 H1 YX9 31 YX9 H2 H2 H 0 1 N N N N N N 123.583 135.027 93.974 -2.043 -1.807 -1.244 H2 YX9 32 YX9 H3 H3 H 0 1 N N N N N N 124.057 136.556 94.789 -0.995 -0.632 -0.413 H3 YX9 33 YX9 H4 H4 H 0 1 N N N N N N 124.662 135.854 91.433 -1.215 -5.806 -0.309 H4 YX9 34 YX9 H5 H5 H 0 1 N N N N N N 124.106 137.199 90.380 -0.515 -5.378 1.282 H5 YX9 35 YX9 H6 H6 H 0 1 N N N N N N 120.214 134.726 91.353 0.687 -1.105 -1.091 H6 YX9 36 YX9 H7 H7 H 0 1 N N N N N N 120.405 134.641 93.137 1.603 -2.456 -1.800 H7 YX9 37 YX9 H8 H8 H 0 1 N N N N N N 119.893 137.403 92.291 1.918 -1.390 1.043 H8 YX9 38 YX9 H9 H9 H 0 1 N N N N N N 118.978 136.380 93.450 2.835 -2.741 0.333 H9 YX9 39 YX9 H10 H10 H 0 1 N N N N N N 117.245 136.602 91.976 3.737 -1.218 -1.403 H10 YX9 40 YX9 H11 H11 H 0 1 N N N N N N 118.115 135.375 90.993 2.821 0.133 -0.693 H11 YX9 41 YX9 H12 H12 H 0 1 N N N N N N 117.479 137.890 88.367 5.870 0.020 -1.006 H12 YX9 42 YX9 H13 H13 H 0 1 N N N N N N 116.252 137.602 89.647 4.954 1.372 -0.296 H13 YX9 43 YX9 H14 H14 H 0 1 N N N N N N 121.558 133.680 102.294 -5.186 5.256 -0.193 H14 YX9 44 YX9 H15 H15 H 0 1 N N N N N N 123.957 133.587 102.687 -7.141 4.801 -1.618 H15 YX9 45 YX9 H16 H16 H 0 1 N N N N N N 125.478 134.385 100.952 -7.937 2.490 -1.915 H16 YX9 46 YX9 H17 H17 H 0 1 N N N N N N 124.606 135.200 98.748 -6.778 0.634 -0.787 H17 YX9 47 YX9 H18 H18 H 0 1 N N N N N N 120.678 134.551 100.111 -4.023 3.399 0.931 H18 YX9 48 YX9 H19 H19 H 0 1 N N N N N N 123.822 137.249 97.806 -4.751 -0.813 -1.290 H19 YX9 49 YX9 H20 H20 H 0 1 N N N N N N 121.414 136.364 95.542 -2.530 -0.748 1.575 H20 YX9 50 YX9 H21 H21 H 0 1 N N N N N N 121.863 134.628 95.427 -3.611 -1.802 0.633 H21 YX9 51 YX9 H22 H22 H 0 1 N N N N N N 121.812 137.482 93.676 -0.706 -2.316 1.457 H22 YX9 52 YX9 H23 H23 H 0 1 N N N N N N 124.367 137.567 93.182 -2.559 -3.867 -0.375 H23 YX9 53 YX9 H24 H24 H 0 1 N N N N N N 123.089 138.430 92.261 -2.391 -3.958 1.410 H24 YX9 54 YX9 H25 H25 H 0 1 N N N N N N 119.294 137.221 89.835 4.052 -0.152 1.440 H25 YX9 55 YX9 H26 H26 H 0 1 N N N N N N 118.275 138.388 90.744 4.968 -1.503 0.731 H26 YX9 56 YX9 H27 H27 H 0 1 N N N N N N 116.140 135.431 89.211 6.185 1.086 1.837 H27 YX9 57 YX9 H28 H28 H 0 1 N N N N N N 117.925 135.272 89.092 7.102 -0.265 1.128 H28 YX9 58 YX9 H29 H29 H 0 1 N N N N N N 118.536 134.391 86.687 7.712 3.173 1.730 H29 YX9 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YX9 N28 N29 DOUB Y N 1 YX9 N28 N27 SING Y N 2 YX9 N29 N30 SING Y N 3 YX9 N27 C26 SING Y N 4 YX9 N30 C26 DOUB Y N 5 YX9 C26 C25 SING N N 6 YX9 C25 C24 SING N N 7 YX9 C24 C23 SING N N 8 YX9 O19 C16 DOUB N N 9 YX9 C23 C22 SING N N 10 YX9 C16 C17 SING N N 11 YX9 C16 N15 SING N N 12 YX9 C17 C18 SING N N 13 YX9 C22 C21 SING N N 14 YX9 N15 C20 SING N N 15 YX9 N15 C14 SING N N 16 YX9 C20 C21 SING N N 17 YX9 C18 C14 SING N N 18 YX9 C14 C13 SING N N 19 YX9 C13 C12 SING N N 20 YX9 C12 C10 SING N N 21 YX9 C10 O11 SING N N 22 YX9 C10 C07 SING N N 23 YX9 F09 C07 SING N N 24 YX9 C07 F08 SING N N 25 YX9 C07 C05 SING N N 26 YX9 C05 C04 DOUB Y N 27 YX9 C05 C06 SING Y N 28 YX9 C04 C03 SING Y N 29 YX9 C06 C01 DOUB Y N 30 YX9 C03 C02 DOUB Y N 31 YX9 C01 C02 SING Y N 32 YX9 C10 H1 SING N N 33 YX9 C13 H2 SING N N 34 YX9 C13 H3 SING N N 35 YX9 C17 H4 SING N N 36 YX9 C17 H5 SING N N 37 YX9 C20 H6 SING N N 38 YX9 C20 H7 SING N N 39 YX9 C21 H8 SING N N 40 YX9 C21 H9 SING N N 41 YX9 C22 H10 SING N N 42 YX9 C22 H11 SING N N 43 YX9 C24 H12 SING N N 44 YX9 C24 H13 SING N N 45 YX9 C01 H14 SING N N 46 YX9 C02 H15 SING N N 47 YX9 C03 H16 SING N N 48 YX9 C04 H17 SING N N 49 YX9 C06 H18 SING N N 50 YX9 O11 H19 SING N N 51 YX9 C12 H20 SING N N 52 YX9 C12 H21 SING N N 53 YX9 C14 H22 SING N N 54 YX9 C18 H23 SING N N 55 YX9 C18 H24 SING N N 56 YX9 C23 H25 SING N N 57 YX9 C23 H26 SING N N 58 YX9 C25 H27 SING N N 59 YX9 C25 H28 SING N N 60 YX9 N27 H29 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YX9 SMILES ACDLabs 12.01 "FC(F)(c1ccccc1)C(O)CCC1CCC(=O)N1CCCCCCc1nnn[NH]1" YX9 InChI InChI 1.06 "InChI=1S/C21H29F2N5O2/c22-21(23,16-8-4-3-5-9-16)18(29)13-11-17-12-14-20(30)28(17)15-7-2-1-6-10-19-24-26-27-25-19/h3-5,8-9,17-18,29H,1-2,6-7,10-15H2,(H,24,25,26,27)/t17-,18+/m0/s1" YX9 InChIKey InChI 1.06 ZFXWQALCLYEUAK-ZWKOTPCHSA-N YX9 SMILES_CANONICAL CACTVS 3.385 "O[C@H](CC[C@H]1CCC(=O)N1CCCCCCc2[nH]nnn2)C(F)(F)c3ccccc3" YX9 SMILES CACTVS 3.385 "O[CH](CC[CH]1CCC(=O)N1CCCCCCc2[nH]nnn2)C(F)(F)c3ccccc3" YX9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C([C@@H](CC[C@H]2CCC(=O)N2CCCCCCc3[nH]nnn3)O)(F)F" YX9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(C(CCC2CCC(=O)N2CCCCCCc3[nH]nnn3)O)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YX9 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-5-[(3R)-4,4-difluoro-3-hydroxy-4-phenylbutyl]-1-[6-(1H-tetrazol-5-yl)hexyl]pyrrolidin-2-one" YX9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-5-[(3~{R})-4,4-bis(fluoranyl)-3-oxidanyl-4-phenyl-butyl]-1-[6-(1~{H}-1,2,3,4-tetrazol-5-yl)hexyl]pyrrolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YX9 "Create component" 2023-03-02 RCSB YX9 "Initial release" 2024-01-03 RCSB #