data_YXH # _chem_comp.id YXH _chem_comp.name "1-(1H-benzimidazol-2-yl)methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H9 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-22 _chem_comp.pdbx_modified_date 2023-07-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.177 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YXH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YXH C10 C1 C 0 1 Y N N 7.973 -19.715 33.014 0.571 -0.693 0.095 C10 YXH 1 YXH N01 N1 N 0 1 N N N 3.652 -18.085 33.348 -3.612 -0.143 -0.835 N01 YXH 2 YXH C02 C2 C 0 1 N N N 4.509 -19.028 34.045 -2.973 -0.000 0.480 C02 YXH 3 YXH C03 C3 C 0 1 Y N N 5.910 -19.098 33.416 -1.475 0.006 0.313 C03 YXH 4 YXH N04 N2 N 0 1 Y N N 6.363 -18.305 32.443 -0.707 1.124 0.211 N04 YXH 5 YXH C05 C4 C 0 1 Y N N 7.653 -18.667 32.173 0.603 0.711 0.071 C05 YXH 6 YXH C06 C5 C 0 1 Y N N 8.623 -18.170 31.251 1.815 1.372 -0.073 C06 YXH 7 YXH C07 C6 C 0 1 Y N N 9.880 -18.767 31.202 2.980 0.645 -0.192 C07 YXH 8 YXH C08 C7 C 0 1 Y N N 10.202 -19.832 32.055 2.948 -0.742 -0.169 C08 YXH 9 YXH C09 C8 C 0 1 Y N N 9.252 -20.333 32.936 1.764 -1.410 -0.032 C09 YXH 10 YXH N11 N3 N 0 1 Y N N 6.864 -19.962 33.762 -0.728 -1.057 0.245 N11 YXH 11 YXH H1 H1 H 0 1 N N N 2.752 -18.067 33.784 -4.617 -0.150 -0.750 H1 YXH 12 YXH H2 H2 H 0 1 N N N 4.060 -17.173 33.387 -3.307 0.583 -1.466 H2 YXH 13 YXH H4 H4 H 0 1 N N N 4.605 -18.713 35.095 -3.291 0.936 0.938 H4 YXH 14 YXH H5 H5 H 0 1 N N N 4.049 -20.026 34.002 -3.264 -0.835 1.117 H5 YXH 15 YXH H6 H6 H 0 1 N N N 5.850 -17.575 31.991 -1.022 2.041 0.231 H6 YXH 16 YXH H7 H7 H 0 1 N N N 8.385 -17.342 30.600 1.845 2.452 -0.093 H7 YXH 17 YXH H8 H8 H 0 1 N N N 10.616 -18.405 30.499 3.923 1.158 -0.305 H8 YXH 18 YXH H9 H9 H 0 1 N N N 11.191 -20.264 32.027 3.868 -1.300 -0.263 H9 YXH 19 YXH H10 H10 H 0 1 N N N 9.483 -21.186 33.557 1.751 -2.490 -0.014 H10 YXH 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YXH C07 C06 DOUB Y N 1 YXH C07 C08 SING Y N 2 YXH C06 C05 SING Y N 3 YXH C08 C09 DOUB Y N 4 YXH C05 N04 SING Y N 5 YXH C05 C10 DOUB Y N 6 YXH N04 C03 SING Y N 7 YXH C09 C10 SING Y N 8 YXH C10 N11 SING Y N 9 YXH N01 C02 SING N N 10 YXH C03 N11 DOUB Y N 11 YXH C03 C02 SING N N 12 YXH N01 H1 SING N N 13 YXH N01 H2 SING N N 14 YXH C02 H4 SING N N 15 YXH C02 H5 SING N N 16 YXH N04 H6 SING N N 17 YXH C06 H7 SING N N 18 YXH C07 H8 SING N N 19 YXH C08 H9 SING N N 20 YXH C09 H10 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YXH SMILES ACDLabs 12.01 "NCc1nc2ccccc2[NH]1" YXH InChI InChI 1.06 "InChI=1S/C8H9N3/c9-5-8-10-6-3-1-2-4-7(6)11-8/h1-4H,5,9H2,(H,10,11)" YXH InChIKey InChI 1.06 UCOSRTUSVXHIMK-UHFFFAOYSA-N YXH SMILES_CANONICAL CACTVS 3.385 "NCc1[nH]c2ccccc2n1" YXH SMILES CACTVS 3.385 "NCc1[nH]c2ccccc2n1" YXH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)CN" YXH SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YXH "SYSTEMATIC NAME" ACDLabs 12.01 "1-(1H-benzimidazol-2-yl)methanamine" YXH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzimidazol-2-ylmethanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YXH "Create component" 2023-06-22 RCSB YXH "Initial release" 2023-07-12 RCSB #