data_YXT # _chem_comp.id YXT _chem_comp.name ralimetinib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 F N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-03 _chem_comp.pdbx_modified_date 2023-10-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YXT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G63 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YXT C10 C1 C 0 1 Y N N 52.254 1.627 23.921 -0.571 2.762 -0.885 C10 YXT 1 YXT N12 N1 N 0 1 Y N N 50.525 1.062 22.416 0.534 0.773 -0.203 N12 YXT 2 YXT C13 C2 C 0 1 Y N N 49.989 0.642 24.744 -1.889 0.777 -0.185 C13 YXT 3 YXT C20 C3 C 0 1 N N N 47.239 -1.805 27.272 -5.588 1.662 1.699 C20 YXT 4 YXT C21 C4 C 0 1 N N N 47.776 -2.862 25.042 -6.193 1.151 -0.671 C21 YXT 5 YXT C22 C5 C 0 1 Y N N 50.402 2.187 26.858 -1.158 -1.656 -0.474 C22 YXT 6 YXT C24 C6 C 0 1 Y N N 51.649 2.676 28.863 -0.338 -3.875 -0.065 C24 YXT 7 YXT C26 C7 C 0 1 Y N N 50.988 4.448 27.363 0.779 -2.453 -1.647 C26 YXT 8 YXT C01 C8 C 0 1 N N N 51.077 -1.072 18.976 2.249 -0.074 2.361 C01 YXT 9 YXT C02 C9 C 0 1 N N N 49.678 -0.515 19.257 3.588 -0.435 1.715 C02 YXT 10 YXT C03 C10 C 0 1 N N N 48.768 -0.801 18.062 4.643 0.597 2.117 C03 YXT 11 YXT C04 C11 C 0 1 N N N 49.080 -1.223 20.474 4.024 -1.823 2.188 C04 YXT 12 YXT C05 C12 C 0 1 N N N 49.733 1.003 19.507 3.434 -0.441 0.192 C05 YXT 13 YXT C07 C13 C 0 1 Y N N 51.288 1.469 21.373 1.714 1.331 -0.406 C07 YXT 14 YXT C08 C14 C 0 1 Y N N 52.548 1.964 21.528 1.806 2.659 -0.862 C08 YXT 15 YXT C09 C15 C 0 1 Y N N 53.073 2.053 22.861 0.630 3.380 -1.104 C09 YXT 16 YXT C11 C16 C 0 1 Y N N 50.965 1.132 23.664 -0.594 1.440 -0.426 C11 YXT 17 YXT C14 C17 C 0 1 Y N N 49.741 1.096 26.023 -2.144 -0.583 -0.205 C14 YXT 18 YXT C16 C18 C 0 1 Y N N 48.408 -0.529 25.593 -4.012 0.412 0.249 C16 YXT 19 YXT C18 C19 C 0 1 N N N 47.341 -1.587 25.761 -5.467 0.634 0.572 C18 YXT 20 YXT C19 C20 C 0 1 N N N 46.032 -1.095 25.155 -6.097 -0.687 1.018 C19 YXT 21 YXT C23 C21 C 0 1 Y N N 51.039 1.763 28.024 -1.258 -2.879 0.189 C23 YXT 22 YXT C25 C22 C 0 1 Y N N 51.624 4.020 28.532 0.683 -3.663 -0.978 C25 YXT 23 YXT C27 C23 C 0 1 Y N N 50.368 3.531 26.522 -0.132 -1.449 -1.396 C27 YXT 24 YXT C30 C24 C 0 1 Y N N 52.057 1.959 19.396 3.839 1.917 -0.619 C30 YXT 25 YXT F28 F1 F 0 1 N N N 52.242 4.917 29.366 1.587 -4.638 -1.216 F28 YXT 26 YXT N06 N2 N 0 1 Y N N 51.003 1.462 20.058 3.015 0.888 -0.261 N06 YXT 27 YXT N15 N3 N 0 1 Y N N 48.776 0.347 26.529 -3.451 -0.751 0.065 N15 YXT 28 YXT N17 N4 N 0 1 Y N N 49.151 -0.335 24.508 -3.088 1.387 0.111 N17 YXT 29 YXT N29 N5 N 0 1 Y N N 53.023 2.267 20.283 3.125 2.956 -0.977 N29 YXT 30 YXT N31 N6 N 0 1 N N N 52.131 2.105 17.951 5.218 1.869 -0.609 N31 YXT 31 YXT H101 H1 H 0 0 N N N 52.617 1.681 24.937 -1.495 3.292 -1.062 H101 YXT 32 YXT H202 H2 H 0 0 N N N 46.924 -0.869 27.758 -6.641 1.822 1.933 H202 YXT 33 YXT H201 H3 H 0 0 N N N 46.500 -2.592 27.480 -5.071 1.293 2.585 H201 YXT 34 YXT H203 H4 H 0 0 N N N 48.220 -2.110 27.665 -5.139 2.603 1.381 H203 YXT 35 YXT H213 H5 H 0 0 N N N 48.721 -3.223 25.474 -6.107 0.419 -1.474 H213 YXT 36 YXT H212 H6 H 0 0 N N N 47.000 -3.633 25.161 -7.245 1.312 -0.437 H212 YXT 37 YXT H211 H7 H 0 0 N N N 47.920 -2.649 23.973 -5.744 2.093 -0.988 H211 YXT 38 YXT H241 H8 H 0 0 N N N 52.140 2.345 29.766 -0.414 -4.823 0.448 H241 YXT 39 YXT H261 H9 H 0 0 N N N 50.978 5.498 27.112 1.577 -2.292 -2.357 H261 YXT 40 YXT H012 H10 H 0 0 N N N 51.733 -0.867 19.835 1.497 -0.809 2.075 H012 YXT 41 YXT H013 H11 H 0 0 N N N 51.013 -2.158 18.814 2.358 -0.070 3.446 H013 YXT 42 YXT H011 H12 H 0 0 N N N 51.489 -0.591 18.077 1.937 0.915 2.024 H011 YXT 43 YXT H032 H13 H 0 0 N N N 47.763 -0.402 18.262 4.753 0.601 3.201 H032 YXT 44 YXT H033 H14 H 0 0 N N N 49.181 -0.320 17.163 5.597 0.339 1.656 H033 YXT 45 YXT H031 H15 H 0 0 N N N 48.705 -1.887 17.901 4.332 1.585 1.779 H031 YXT 46 YXT H042 H16 H 0 0 N N N 49.713 -1.037 21.355 3.273 -2.558 1.902 H042 YXT 47 YXT H043 H17 H 0 0 N N N 48.067 -0.837 20.662 4.978 -2.080 1.728 H043 YXT 48 YXT H041 H18 H 0 0 N N N 49.030 -2.305 20.281 4.134 -1.819 3.273 H041 YXT 49 YXT H052 H19 H 0 0 N N N 49.563 1.519 18.550 4.388 -0.698 -0.268 H052 YXT 50 YXT H051 H20 H 0 0 N N N 48.932 1.268 20.213 2.682 -1.176 -0.094 H051 YXT 51 YXT H091 H21 H 0 0 N N N 54.066 2.435 23.044 0.670 4.401 -1.454 H091 YXT 52 YXT H192 H22 H 0 0 N N N 45.712 -0.176 25.668 -6.011 -1.420 0.215 H192 YXT 53 YXT H193 H23 H 0 0 N N N 46.179 -0.885 24.085 -5.581 -1.056 1.904 H193 YXT 54 YXT H191 H24 H 0 0 N N N 45.259 -1.869 25.274 -7.150 -0.527 1.252 H191 YXT 55 YXT H231 H25 H 0 0 N N N 51.056 0.712 28.273 -2.053 -3.046 0.900 H231 YXT 56 YXT H271 H26 H 0 0 N N N 49.869 3.860 25.623 -0.051 -0.503 -1.912 H271 YXT 57 YXT H171 H28 H 0 0 N N N 49.081 -0.850 23.654 -3.241 2.341 0.198 H171 YXT 58 YXT H311 H29 H 0 0 N N N 53.024 2.477 17.698 5.673 1.059 -0.333 H311 YXT 59 YXT H312 H30 H 0 0 N N N 52.008 1.212 17.519 5.732 2.646 -0.879 H312 YXT 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YXT N31 C30 SING N N 1 YXT C03 C02 SING N N 2 YXT C01 C02 SING N N 3 YXT C02 C05 SING N N 4 YXT C02 C04 SING N N 5 YXT C30 N06 SING Y N 6 YXT C30 N29 DOUB Y N 7 YXT C05 N06 SING N N 8 YXT N06 C07 SING Y N 9 YXT N29 C08 SING Y N 10 YXT C07 C08 DOUB Y N 11 YXT C07 N12 SING Y N 12 YXT C08 C09 SING Y N 13 YXT N12 C11 DOUB Y N 14 YXT C09 C10 DOUB Y N 15 YXT C11 C10 SING Y N 16 YXT C11 C13 SING N N 17 YXT N17 C13 SING Y N 18 YXT N17 C16 SING Y N 19 YXT C13 C14 DOUB Y N 20 YXT C21 C18 SING N N 21 YXT C19 C18 SING N N 22 YXT C16 C18 SING N N 23 YXT C16 N15 DOUB Y N 24 YXT C18 C20 SING N N 25 YXT C14 N15 SING Y N 26 YXT C14 C22 SING N N 27 YXT C27 C22 DOUB Y N 28 YXT C27 C26 SING Y N 29 YXT C22 C23 SING Y N 30 YXT C26 C25 DOUB Y N 31 YXT C23 C24 DOUB Y N 32 YXT C25 C24 SING Y N 33 YXT C25 F28 SING N N 34 YXT C10 H101 SING N N 35 YXT C20 H202 SING N N 36 YXT C20 H201 SING N N 37 YXT C20 H203 SING N N 38 YXT C21 H213 SING N N 39 YXT C21 H212 SING N N 40 YXT C21 H211 SING N N 41 YXT C24 H241 SING N N 42 YXT C26 H261 SING N N 43 YXT C01 H012 SING N N 44 YXT C01 H013 SING N N 45 YXT C01 H011 SING N N 46 YXT C03 H032 SING N N 47 YXT C03 H033 SING N N 48 YXT C03 H031 SING N N 49 YXT C04 H042 SING N N 50 YXT C04 H043 SING N N 51 YXT C04 H041 SING N N 52 YXT C05 H052 SING N N 53 YXT C05 H051 SING N N 54 YXT C09 H091 SING N N 55 YXT C19 H192 SING N N 56 YXT C19 H193 SING N N 57 YXT C19 H191 SING N N 58 YXT C23 H231 SING N N 59 YXT C27 H271 SING N N 60 YXT N17 H171 SING N N 61 YXT N31 H311 SING N N 62 YXT N31 H312 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YXT SMILES ACDLabs 12.01 "Fc1ccc(cc1)c1nc([NH]c1c1ccc2nc(N)n(CC(C)(C)C)c2n1)C(C)(C)C" YXT InChI InChI 1.06 "InChI=1S/C24H29FN6/c1-23(2,3)13-31-20-17(28-22(31)26)12-11-16(27-20)19-18(14-7-9-15(25)10-8-14)29-21(30-19)24(4,5)6/h7-12H,13H2,1-6H3,(H2,26,28)(H,29,30)" YXT InChIKey InChI 1.06 XPPBBJCBDOEXDN-UHFFFAOYSA-N YXT SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)Cn1c(N)nc2ccc(nc12)c3[nH]c(nc3c4ccc(F)cc4)C(C)(C)C" YXT SMILES CACTVS 3.385 "CC(C)(C)Cn1c(N)nc2ccc(nc12)c3[nH]c(nc3c4ccc(F)cc4)C(C)(C)C" YXT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)Cn1c2c(ccc(n2)c3c(nc([nH]3)C(C)(C)C)c4ccc(cc4)F)nc1N" YXT SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)Cn1c2c(ccc(n2)c3c(nc([nH]3)C(C)(C)C)c4ccc(cc4)F)nc1N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YXT "SYSTEMATIC NAME" ACDLabs 12.01 "(5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine" YXT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2-~{tert}-butyl-4-(4-fluorophenyl)-1~{H}-imidazol-5-yl]-3-(2,2-dimethylpropyl)imidazo[4,5-b]pyridin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YXT "Create component" 2023-03-03 RCSB YXT "Initial release" 2023-10-11 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YXT _pdbx_chem_comp_synonyms.name "(5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type "systematic name" #