data_YYH # _chem_comp.id YYH _chem_comp.name 7-deoxy-L-glycero-alpha-D-manno-heptopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O6" _chem_comp.mon_nstd_parent_comp_id MAN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-17 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YYH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OB0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YYH O6 O6 O 0 1 N N N 16.302 -8.736 -58.269 2.318 -0.860 -1.261 O6 YYH 1 YYH C1 C1 C 0 1 N N S 12.566 -10.651 -58.573 -0.755 1.732 -0.055 C1 YYH 2 YYH C2 C2 C 0 1 N N S 11.563 -9.559 -58.284 -1.816 0.673 -0.363 C2 YYH 3 YYH C3 C3 C 0 1 N N S 11.712 -8.437 -59.304 -1.533 -0.581 0.471 C3 YYH 4 YYH C4 C4 C 0 1 N N S 13.081 -7.792 -59.358 -0.115 -1.073 0.167 C4 YYH 5 YYH C5 C5 C 0 1 N N R 14.098 -8.931 -59.452 0.881 0.053 0.454 C5 YYH 6 YYH C6 C6 C 0 1 N N S 15.585 -8.530 -59.509 2.294 -0.411 0.095 C6 YYH 7 YYH C6M C6M C 0 1 N N N 16.182 -9.531 -60.469 3.272 0.753 0.264 C6M YYH 8 YYH O1 O1 O 0 1 N Y N 12.382 -11.291 -59.836 -0.835 2.101 1.323 O1 YYH 9 YYH O2 O2 O 0 1 N N N 11.756 -9.097 -56.967 -1.773 0.343 -1.753 O2 YYH 10 YYH O3 O3 O 0 1 N N N 10.647 -7.507 -59.348 -2.476 -1.601 0.136 O3 YYH 11 YYH O4 O4 O 0 1 N N N 13.130 -7.119 -60.607 0.187 -2.200 0.993 O4 YYH 12 YYH O5 O5 O 0 1 N N N 13.869 -10.017 -58.514 0.542 1.198 -0.331 O5 YYH 13 YYH H1 H1 H 0 1 N N N 12.497 -11.402 -57.772 -0.926 2.610 -0.678 H1 YYH 14 YYH HO1 HO1 H 0 1 N Y N 11.526 -11.702 -59.862 -0.189 2.770 1.589 HO1 YYH 15 YYH H2 H2 H 0 1 N N N 10.553 -9.982 -58.384 -2.803 1.062 -0.112 H2 YYH 16 YYH HO2 HO2 H 0 1 N N N 11.129 -8.409 -56.777 -1.940 1.092 -2.340 HO2 YYH 17 YYH H3 H3 H 0 1 N N N 11.646 -8.965 -60.266 -1.615 -0.340 1.531 H3 YYH 18 YYH HO3 HO3 H 0 1 N N N 10.828 -6.849 -60.009 -3.397 -1.354 0.298 HO3 YYH 19 YYH H4 H4 H 0 1 N N N 13.270 -7.140 -58.493 -0.047 -1.362 -0.882 H4 YYH 20 YYH HO4 HO4 H 0 1 N N N 13.972 -6.690 -60.703 -0.409 -2.951 0.866 HO4 YYH 21 YYH H5 H5 H 0 1 N N N 13.908 -9.373 -60.441 0.841 0.313 1.512 H5 YYH 22 YYH H61 H61 H 0 1 N N N 15.697 -7.503 -59.886 2.586 -1.229 0.754 H61 YYH 23 YYH H6M1 H6M1 H 0 0 N N N 15.688 -9.441 -61.448 3.254 1.096 1.298 H6M1 YYH 24 YYH H6M2 H6M2 H 0 0 N N N 16.035 -10.548 -60.076 4.278 0.423 0.008 H6M2 YYH 25 YYH H6M3 H6M3 H 0 0 N N N 17.258 -9.334 -60.582 2.980 1.571 -0.395 H6M3 YYH 26 YYH HO6 HO6 H 0 1 N N N 17.207 -8.469 -58.378 3.184 -1.170 -1.558 HO6 YYH 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YYH O6 C6 SING N N 1 YYH O6 HO6 SING N N 2 YYH C1 O5 SING N N 3 YYH C1 H1 SING N N 4 YYH C1 O1 SING N N 5 YYH C1 C2 SING N N 6 YYH C2 H2 SING N N 7 YYH C2 C3 SING N N 8 YYH C2 O2 SING N N 9 YYH C3 C4 SING N N 10 YYH C3 H3 SING N N 11 YYH C3 O3 SING N N 12 YYH C4 O4 SING N N 13 YYH C4 C5 SING N N 14 YYH C4 H4 SING N N 15 YYH C5 O5 SING N N 16 YYH C5 C6 SING N N 17 YYH C5 H5 SING N N 18 YYH C6 C6M SING N N 19 YYH C6 H61 SING N N 20 YYH C6M H6M1 SING N N 21 YYH C6M H6M3 SING N N 22 YYH C6M H6M2 SING N N 23 YYH O1 HO1 SING N N 24 YYH O2 HO2 SING N N 25 YYH O3 HO3 SING N N 26 YYH O4 HO4 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YYH SMILES ACDLabs 12.01 "OC1C(O)C(OC(O)C1O)C(O)C" YYH InChI InChI 1.03 "InChI=1S/C7H14O6/c1-2(8)6-4(10)3(9)5(11)7(12)13-6/h2-12H,1H3/t2-,3-,4-,5-,6+,7-/m0/s1" YYH InChIKey InChI 1.03 PZODEECXPHBZCU-QQABCQGCSA-N YYH SMILES_CANONICAL CACTVS 3.370 "C[C@H](O)[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O" YYH SMILES CACTVS 3.370 "C[CH](O)[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" YYH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O" YYH SMILES "OpenEye OEToolkits" 1.7.6 "CC(C1C(C(C(C(O1)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YYH "SYSTEMATIC NAME" ACDLabs 12.01 7-deoxy-L-glycero-alpha-D-manno-heptopyranose YYH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3S,4S,5S,6R)-6-[(1S)-1-oxidanylethyl]oxane-2,3,4,5-tetrol" # _pdbx_chem_comp_related.comp_id YYH _pdbx_chem_comp_related.related_comp_id MAN _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 YYH C1 MAN C1 "Carbohydrate core" 2 YYH C2 MAN C2 "Carbohydrate core" 3 YYH C3 MAN C3 "Carbohydrate core" 4 YYH C4 MAN C4 "Carbohydrate core" 5 YYH C5 MAN C5 "Carbohydrate core" 6 YYH C6 MAN C6 "Carbohydrate core" 7 YYH O1 MAN O1 "Carbohydrate core" 8 YYH O2 MAN O2 "Carbohydrate core" 9 YYH O3 MAN O3 "Carbohydrate core" 10 YYH O4 MAN O4 "Carbohydrate core" 11 YYH O5 MAN O5 "Carbohydrate core" 12 YYH O6 MAN O6 "Carbohydrate core" 13 YYH H1 MAN H1 "Carbohydrate core" 14 YYH H2 MAN H2 "Carbohydrate core" 15 YYH H3 MAN H3 "Carbohydrate core" 16 YYH H4 MAN H4 "Carbohydrate core" 17 YYH H5 MAN H5 "Carbohydrate core" 18 YYH H61 MAN H61 "Carbohydrate core" 19 YYH HO1 MAN HO1 "Carbohydrate core" 20 YYH HO2 MAN HO2 "Carbohydrate core" 21 YYH HO3 MAN HO3 "Carbohydrate core" 22 YYH HO4 MAN HO4 "Carbohydrate core" 23 YYH HO6 MAN HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support YYH "CARBOHYDRATE ISOMER" D PDB ? YYH "CARBOHYDRATE RING" pyranose PDB ? YYH "CARBOHYDRATE ANOMER" alpha PDB ? YYH "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YYH "Create component" 2012-12-17 RCSB YYH "Modify atom id" 2013-02-12 RCSB YYH "Modify atom id" 2020-05-09 RCSB YYH "Modify component atom id" 2020-07-17 RCSB YYH "Initial release" 2020-07-29 RCSB ##