data_YYK # _chem_comp.id YYK _chem_comp.name beta-D-quinovopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-D-quinovoose; 6-deoxy-beta-D-glucopyranose; beta-D-quinovose; D-quinovose; quinovose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YYK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TAA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 YYK beta-D-quinovoose PDB ? 2 YYK 6-deoxy-beta-D-glucopyranose PDB ? 3 YYK beta-D-quinovose PDB ? 4 YYK D-quinovose PDB ? 5 YYK quinovose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YYK C1 C1 C 0 1 N N R 34.412 30.490 27.203 -1.191 0.962 0.301 C1 YYK 1 YYK C2 C2 C 0 1 N N R 33.058 31.154 27.311 -1.221 -0.468 -0.245 C2 YYK 2 YYK C3 C3 C 0 1 N N S 33.220 32.630 27.611 0.033 -1.212 0.225 C3 YYK 3 YYK C4 C4 C 0 1 N N S 34.185 32.815 28.817 1.274 -0.440 -0.234 C4 YYK 4 YYK C5 C5 C 0 1 N N R 35.520 32.077 28.569 1.207 0.989 0.312 C5 YYK 5 YYK C6 C6 C 0 1 N N N 36.425 32.006 29.818 2.413 1.785 -0.192 C6 YYK 6 YYK O1 O1 O 0 1 N Y N 34.291 29.084 27.087 -2.330 1.680 -0.180 O1 YYK 7 YYK O2 O2 O 0 1 N N N 32.164 31.039 26.222 -2.385 -1.140 0.239 O2 YYK 8 YYK O3 O3 O 0 1 N N N 31.977 33.218 28.025 0.050 -2.524 -0.340 O3 YYK 9 YYK O4 O4 O 0 1 N N N 34.465 34.145 29.154 2.448 -1.086 0.261 O4 YYK 10 YYK O5 O5 O 0 1 N N N 35.147 30.703 28.413 0.003 1.614 -0.138 O5 YYK 11 YYK H1 H1 H 0 1 N N N 34.956 30.907 26.343 -1.212 0.936 1.390 H1 YYK 12 YYK HO1 H1O H 0 1 N Y N 35.156 28.696 27.021 -2.376 2.595 0.127 HO1 YYK 13 YYK H2 H2 H 0 1 N N N 32.566 30.713 28.190 -1.241 -0.441 -1.335 H2 YYK 14 YYK HO2 H2O H 0 1 N Y N 31.358 31.500 26.423 -3.217 -0.720 -0.018 HO2 YYK 15 YYK H3 H3 H 0 1 N N N 33.630 33.149 26.732 0.029 -1.282 1.313 H3 YYK 16 YYK HO3 H3O H 0 1 N Y N 32.108 34.141 28.206 -0.711 -3.067 -0.096 HO3 YYK 17 YYK H4 H4 H 0 1 N N N 33.708 32.328 29.680 1.304 -0.412 -1.323 H4 YYK 18 YYK HO4 H4O H 0 1 N Y N 35.058 34.166 29.896 3.273 -0.649 0.008 HO4 YYK 19 YYK H5 H5 H 0 1 N N N 36.056 32.487 27.701 1.218 0.963 1.401 H5 YYK 20 YYK H63 H61 H 0 1 N N N 35.898 31.472 30.623 3.331 1.308 0.150 H63 YYK 21 YYK H61 H62 H 0 1 N N N 37.353 31.470 29.569 2.401 1.811 -1.282 H61 YYK 22 YYK H62 H63 H 0 1 N N N 36.669 33.025 30.152 2.365 2.802 0.196 H62 YYK 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YYK C1 C2 SING N N 1 YYK C1 O5 SING N N 2 YYK C1 O1 SING N N 3 YYK C1 H1 SING N N 4 YYK C2 C3 SING N N 5 YYK C2 O2 SING N N 6 YYK C2 H2 SING N N 7 YYK C3 C4 SING N N 8 YYK C3 O3 SING N N 9 YYK C3 H3 SING N N 10 YYK C4 C5 SING N N 11 YYK C4 O4 SING N N 12 YYK C4 H4 SING N N 13 YYK C5 O5 SING N N 14 YYK C5 H5 SING N N 15 YYK C5 C6 SING N N 16 YYK C6 H61 SING N N 17 YYK C6 H62 SING N N 18 YYK C6 H63 SING N N 19 YYK O1 HO1 SING N N 20 YYK O2 HO2 SING N N 21 YYK O3 HO3 SING N N 22 YYK O4 HO4 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YYK SMILES ACDLabs 12.01 "OC1C(O)C(OC(O)C1O)C" YYK InChI InChI 1.03 "InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5-,6-/m1/s1" YYK InChIKey InChI 1.03 SHZGCJCMOBCMKK-VFUOTHLCSA-N YYK SMILES_CANONICAL CACTVS 3.370 "C[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O" YYK SMILES CACTVS 3.370 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" YYK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O" YYK SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YYK "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-beta-D-glucopyranose YYK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S,5S,6R)-6-methyloxane-2,3,4,5-tetrol" YYK "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DQuipb YYK "COMMON NAME" GMML 1.0 b-D-quinovopyranose YYK "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-6-deoxy-Glcp YYK "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Qui # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support YYK "CARBOHYDRATE ISOMER" D PDB ? YYK "CARBOHYDRATE RING" pyranose PDB ? YYK "CARBOHYDRATE ANOMER" beta PDB ? YYK "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YYK "Create component" 2012-12-18 RCSB YYK "Modify atom id" 2013-02-12 RCSB YYK "Other modification" 2019-08-12 RCSB YYK "Other modification" 2019-12-19 RCSB YYK "Other modification" 2020-06-03 RCSB YYK "Other modification" 2020-06-10 RCSB YYK "Other modification" 2020-07-03 RCSB YYK "Modify atom id" 2020-07-17 RCSB YYK "Modify component atom id" 2020-07-17 RCSB YYK "Initial release" 2020-07-29 RCSB ##