data_YZI # _chem_comp.id YZI _chem_comp.name "(3S,5S)-5-(aminomethyl)-N-(4-chloro-3-fluorophenyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 Cl F N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 411.901 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YZI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GCZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YZI C01 C1 C 0 1 N N N -1.402 13.675 -8.098 -7.906 1.909 1.360 C01 YZI 1 YZI C03 C2 C 0 1 N N N -0.093 12.776 -9.571 -5.878 0.586 1.360 C03 YZI 2 YZI C04 C3 C 0 1 N N N 0.607 13.699 -10.549 -4.897 -0.163 0.451 C04 YZI 3 YZI C06 C4 C 0 1 N N N 0.009 16.121 -11.181 -2.970 0.883 -0.648 C06 YZI 4 YZI C08 C5 C 0 1 N N N -2.267 16.985 -12.362 -0.748 0.246 0.159 C08 YZI 5 YZI C09 C6 C 0 1 N N S -2.047 17.570 -13.769 0.101 -0.851 -0.492 C09 YZI 6 YZI C10 C7 C 0 1 N N N -3.077 17.280 -14.881 1.550 -0.643 -0.135 C10 YZI 7 YZI C13 C8 C 0 1 Y N N -3.469 16.817 -17.356 3.548 0.643 -0.264 C13 YZI 8 YZI C14 C9 C 0 1 Y N N -4.831 16.961 -17.320 4.364 -0.479 -0.206 C14 YZI 9 YZI C15 C10 C 0 1 Y N N -5.554 16.718 -18.469 5.722 -0.333 0.014 C15 YZI 10 YZI C17 C11 C 0 1 Y N N -4.949 16.345 -19.633 6.266 0.932 0.176 C17 YZI 11 YZI C19 C12 C 0 1 Y N N -3.596 16.209 -19.662 5.454 2.049 0.119 C19 YZI 12 YZI C20 C13 C 0 1 Y N N -2.866 16.450 -18.521 4.098 1.908 -0.106 C20 YZI 13 YZI C21 C14 C 0 1 N N N -1.855 19.002 -13.708 -0.360 -2.218 0.019 C21 YZI 14 YZI C22 C15 C 0 1 N N S -0.514 19.175 -13.164 -1.822 -2.444 -0.372 C22 YZI 15 YZI C23 C16 C 0 1 N N N -0.191 20.675 -13.043 -2.272 -3.824 0.111 C23 YZI 16 YZI C25 C17 C 0 1 N N N -0.517 18.568 -11.765 -2.693 -1.365 0.280 C25 YZI 17 YZI C27 C18 C 0 1 N N N -1.405 14.028 -11.489 -5.212 1.668 -1.258 C27 YZI 18 YZI C28 C19 C 0 1 N N N -2.103 13.907 -10.142 -6.181 2.344 -0.282 C28 YZI 19 YZI F16 F1 F 0 1 N N N -6.872 16.837 -18.476 6.517 -1.423 0.071 F16 YZI 20 YZI N02 N1 N 0 1 N N N -1.376 13.153 -9.225 -6.845 1.318 0.532 N02 YZI 21 YZI N05 N2 N 0 1 N N N -0.257 14.658 -11.103 -4.306 0.799 -0.491 N05 YZI 22 YZI N07 N3 N 0 1 N N N -0.923 17.144 -11.734 -2.167 -0.045 -0.090 N07 YZI 23 YZI N12 N4 N 0 1 N N N -2.599 17.069 -16.224 2.174 0.499 -0.486 N12 YZI 24 YZI N24 N5 N 0 1 N N N 0.710 20.894 -11.904 -3.635 -4.090 -0.368 N24 YZI 25 YZI O11 O1 O 0 1 N N N -4.198 17.252 -14.656 2.156 -1.503 0.469 O11 YZI 26 YZI O26 O2 O 0 1 N N N 1.036 16.510 -10.774 -2.490 1.795 -1.292 O26 YZI 27 YZI CL1 CL1 CL 0 0 N N N -5.867 16.032 -21.107 7.971 1.112 0.453 CL1 YZI 28 YZI H1 H1 H 0 1 N N N -0.821 13.060 -7.395 -7.464 2.602 2.077 H1 YZI 29 YZI H2 H2 H 0 1 N N N -0.965 14.683 -8.151 -8.608 2.446 0.722 H2 YZI 30 YZI H3 H3 H 0 1 N N N -2.443 13.745 -7.750 -8.432 1.119 1.895 H3 YZI 31 YZI H4 H4 H 0 1 N N N -0.142 11.775 -10.023 -6.407 -0.129 1.991 H4 YZI 32 YZI H5 H5 H 0 1 N N N 0.509 12.734 -8.652 -5.330 1.289 1.987 H5 YZI 33 YZI H6 H6 H 0 1 N N N 1.029 13.093 -11.364 -4.110 -0.614 1.056 H6 YZI 34 YZI H7 H7 H 0 1 N N N 1.419 14.220 -10.021 -5.427 -0.940 -0.099 H7 YZI 35 YZI H8 H8 H 0 1 N N N -3.033 17.551 -11.811 -0.562 0.264 1.232 H8 YZI 36 YZI H9 H9 H 0 1 N N N -2.559 15.926 -12.413 -0.492 1.213 -0.273 H9 YZI 37 YZI H10 H10 H 0 1 N N N -1.099 17.139 -14.124 -0.017 -0.808 -1.575 H10 YZI 38 YZI H11 H11 H 0 1 N N N -5.329 17.259 -16.409 3.940 -1.463 -0.332 H11 YZI 39 YZI H12 H12 H 0 1 N N N -3.098 15.914 -20.574 5.880 3.033 0.247 H12 YZI 40 YZI H13 H13 H 0 1 N N N -1.791 16.346 -18.550 3.464 2.782 -0.151 H13 YZI 41 YZI H14 H14 H 0 1 N N N -1.926 19.446 -14.712 0.259 -2.998 -0.424 H14 YZI 42 YZI H15 H15 H 0 1 N N N -2.603 19.466 -13.049 -0.265 -2.251 1.104 H15 YZI 43 YZI H16 H16 H 0 1 N N N 0.238 18.677 -13.793 -1.922 -2.387 -1.456 H16 YZI 44 YZI H17 H17 H 0 1 N N N 0.296 21.020 -13.967 -1.596 -4.584 -0.280 H17 YZI 45 YZI H18 H18 H 0 1 N N N -1.123 21.239 -12.887 -2.258 -3.851 1.200 H18 YZI 46 YZI H19 H19 H 0 1 N N N 0.498 18.649 -11.349 -3.720 -1.462 -0.073 H19 YZI 47 YZI H20 H20 H 0 1 N N N -1.216 19.142 -11.139 -2.665 -1.479 1.364 H20 YZI 48 YZI H21 H21 H 0 1 N N N -1.987 14.636 -12.197 -5.773 1.069 -1.975 H21 YZI 49 YZI H22 H22 H 0 1 N N N -1.201 13.043 -11.933 -4.633 2.427 -1.785 H22 YZI 50 YZI H23 H23 H 0 1 N N N -2.250 14.916 -9.730 -5.628 3.023 0.367 H23 YZI 51 YZI H24 H24 H 0 1 N N N -3.081 13.428 -10.295 -6.929 2.905 -0.843 H24 YZI 52 YZI H26 H26 H 0 1 N N N -1.612 17.098 -16.384 1.670 1.221 -0.893 H26 YZI 53 YZI H27 H27 H 0 1 N N N 0.919 21.869 -11.826 -3.956 -4.996 -0.062 H27 YZI 54 YZI H28 H28 H 0 1 N N N 0.267 20.580 -11.064 -4.270 -3.363 -0.072 H28 YZI 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YZI CL1 C17 SING N N 1 YZI C19 C17 DOUB Y N 2 YZI C19 C20 SING Y N 3 YZI C17 C15 SING Y N 4 YZI C20 C13 DOUB Y N 5 YZI F16 C15 SING N N 6 YZI C15 C14 DOUB Y N 7 YZI C13 C14 SING Y N 8 YZI C13 N12 SING N N 9 YZI N12 C10 SING N N 10 YZI C10 O11 DOUB N N 11 YZI C10 C09 SING N N 12 YZI C09 C21 SING N N 13 YZI C09 C08 SING N N 14 YZI C21 C22 SING N N 15 YZI C22 C23 SING N N 16 YZI C22 C25 SING N N 17 YZI C23 N24 SING N N 18 YZI C08 N07 SING N N 19 YZI C25 N07 SING N N 20 YZI N07 C06 SING N N 21 YZI C27 N05 SING N N 22 YZI C27 C28 SING N N 23 YZI C06 N05 SING N N 24 YZI C06 O26 DOUB N N 25 YZI N05 C04 SING N N 26 YZI C04 C03 SING N N 27 YZI C28 N02 SING N N 28 YZI C03 N02 SING N N 29 YZI N02 C01 SING N N 30 YZI C01 H1 SING N N 31 YZI C01 H2 SING N N 32 YZI C01 H3 SING N N 33 YZI C03 H4 SING N N 34 YZI C03 H5 SING N N 35 YZI C04 H6 SING N N 36 YZI C04 H7 SING N N 37 YZI C08 H8 SING N N 38 YZI C08 H9 SING N N 39 YZI C09 H10 SING N N 40 YZI C14 H11 SING N N 41 YZI C19 H12 SING N N 42 YZI C20 H13 SING N N 43 YZI C21 H14 SING N N 44 YZI C21 H15 SING N N 45 YZI C22 H16 SING N N 46 YZI C23 H17 SING N N 47 YZI C23 H18 SING N N 48 YZI C25 H19 SING N N 49 YZI C25 H20 SING N N 50 YZI C27 H21 SING N N 51 YZI C27 H22 SING N N 52 YZI C28 H23 SING N N 53 YZI C28 H24 SING N N 54 YZI N12 H26 SING N N 55 YZI N24 H27 SING N N 56 YZI N24 H28 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YZI SMILES ACDLabs 12.01 "O=C(N1CCN(C)CC1)N1CC(CC(CN)C1)C(=O)Nc1ccc(Cl)c(F)c1" YZI InChI InChI 1.06 "InChI=1S/C19H27ClFN5O2/c1-24-4-6-25(7-5-24)19(28)26-11-13(10-22)8-14(12-26)18(27)23-15-2-3-16(20)17(21)9-15/h2-3,9,13-14H,4-8,10-12,22H2,1H3,(H,23,27)/t13-,14-/m0/s1" YZI InChIKey InChI 1.06 JAKJXJBBYMLBJM-KBPBESRZSA-N YZI SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)C(=O)N2C[C@H](CN)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3" YZI SMILES CACTVS 3.385 "CN1CCN(CC1)C(=O)N2C[CH](CN)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3" YZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2C[C@@H](C[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl)CN" YZI SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2CC(CC(C2)C(=O)Nc3ccc(c(c3)F)Cl)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YZI "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5S)-5-(aminomethyl)-N-(4-chloro-3-fluorophenyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide" YZI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{S})-5-(aminomethyl)-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-1-(4-methylpiperazin-1-yl)carbonyl-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YZI "Create component" 2023-03-06 RCSB YZI "Initial release" 2023-06-07 RCSB #