data_Z1Z # _chem_comp.id Z1Z _chem_comp.name "(3S,5R)-N-(4-chloro-3-fluorophenyl)-1-(4-glycylpiperazine-1-carbonyl)-5-(hydroxymethyl)piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 Cl F N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.911 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z1Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GD3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z1Z C10 C1 C 0 1 N N N -2.067 17.519 -12.430 0.256 0.500 0.457 C10 Z1Z 1 Z1Z C11 C2 C 0 1 N N S -1.901 17.844 -13.954 0.875 -0.546 -0.476 C11 Z1Z 2 Z1Z C12 C3 C 0 1 N N N -3.044 17.533 -14.972 2.372 -0.553 -0.301 C12 Z1Z 3 Z1Z C15 C4 C 0 1 Y N N -3.330 17.273 -17.527 4.461 0.585 -0.297 C15 Z1Z 4 Z1Z C16 C5 C 0 1 Y N N -4.720 17.258 -17.508 5.224 -0.556 -0.508 C16 Z1Z 5 Z1Z C17 C6 C 0 1 Y N N -5.418 17.044 -18.683 6.584 -0.532 -0.259 C17 Z1Z 6 Z1Z C19 C7 C 0 1 Y N N -4.737 16.862 -19.879 7.185 0.630 0.200 C19 Z1Z 7 Z1Z C21 C8 C 0 1 Y N N -3.350 16.898 -19.900 6.425 1.766 0.411 C21 Z1Z 8 Z1Z C22 C9 C 0 1 Y N N -2.644 17.101 -18.719 5.067 1.748 0.158 C22 Z1Z 9 Z1Z C23 C10 C 0 1 N N N -1.622 19.277 -14.182 0.313 -1.927 -0.131 C23 Z1Z 10 Z1Z C24 C11 C 0 1 N N R -0.349 19.664 -13.509 -1.203 -1.929 -0.340 C24 Z1Z 11 Z1Z C25 C12 C 0 1 N N N -0.212 21.196 -13.384 -1.760 -3.320 -0.026 C25 Z1Z 12 Z1Z C27 C13 C 0 1 N N N -0.318 19.153 -12.068 -1.845 -0.899 0.595 C27 Z1Z 13 Z1Z C29 C14 C 0 1 N N N -0.925 14.538 -11.872 -4.157 2.234 -0.668 C29 Z1Z 14 Z1Z C30 C15 C 0 1 N N N -1.259 14.032 -10.474 -5.158 1.288 -1.342 C30 Z1Z 15 Z1Z C02 C16 C 0 1 N N N 0.297 10.912 -8.540 -7.743 -0.466 0.886 C02 Z1Z 16 Z1Z C03 C17 C 0 1 N N N -0.642 12.036 -8.998 -7.120 0.400 -0.178 C03 Z1Z 17 Z1Z C05 C18 C 0 1 N N N 0.929 13.026 -10.794 -4.913 -0.340 0.579 C05 Z1Z 18 Z1Z C06 C19 C 0 1 N N N 1.379 14.385 -11.328 -3.912 0.607 1.254 C06 Z1Z 19 Z1Z C08 C20 C 0 1 N N N 0.446 16.732 -11.729 -1.950 1.494 0.089 C08 Z1Z 20 Z1Z F18 F1 F 0 1 N N N -6.782 17.008 -18.653 7.328 -1.641 -0.464 F18 Z1Z 21 Z1Z N01 N1 N 0 1 N N N 1.725 11.176 -8.629 -9.206 -0.345 0.822 N01 Z1Z 22 Z1Z N04 N2 N 0 1 N N N -0.323 12.996 -10.051 -5.779 0.448 -0.309 N04 Z1Z 23 Z1Z N07 N3 N 0 1 N N N 0.288 15.282 -11.668 -3.291 1.447 0.220 N07 Z1Z 24 Z1Z N09 N4 N 0 1 N N N -0.625 17.699 -12.022 -1.207 0.405 0.370 N09 Z1Z 25 Z1Z N14 N5 N 0 1 N N N -2.557 17.500 -16.333 3.084 0.564 -0.548 N14 Z1Z 26 Z1Z O13 O1 O 0 1 N N N -4.186 17.371 -14.693 2.935 -1.565 0.060 O13 Z1Z 27 Z1Z O26 O2 O 0 1 N N N 0.806 21.419 -12.447 -3.155 -3.355 -0.333 O26 Z1Z 28 Z1Z O28 O3 O 0 1 N N N 1.525 17.163 -11.504 -1.411 2.518 -0.283 O28 Z1Z 29 Z1Z O31 O4 O 0 1 N N N -1.702 12.120 -8.471 -7.825 1.054 -0.917 O31 Z1Z 30 Z1Z CL1 CL1 CL 0 0 N N N -5.644 16.587 -21.392 8.892 0.658 0.512 CL1 Z1Z 31 Z1Z H1 H1 H 0 1 N N N -2.736 18.229 -11.922 0.575 0.309 1.482 H1 Z1Z 32 Z1Z H2 H2 H 0 1 N N N -2.424 16.493 -12.259 0.577 1.497 0.155 H2 Z1Z 33 Z1Z H3 H3 H 0 1 N N N -1.020 17.281 -14.296 0.630 -0.301 -1.510 H3 Z1Z 34 Z1Z H4 H4 H 0 1 N N N -5.252 17.413 -16.581 4.755 -1.461 -0.866 H4 Z1Z 35 Z1Z H5 H5 H 0 1 N N N -2.820 16.769 -20.832 6.895 2.670 0.770 H5 Z1Z 36 Z1Z H6 H6 H 0 1 N N N -1.564 17.125 -18.731 4.475 2.637 0.323 H6 Z1Z 37 Z1Z H7 H7 H 0 1 N N N -1.534 19.463 -15.263 0.770 -2.677 -0.777 H7 Z1Z 38 Z1Z H8 H8 H 0 1 N N N -2.447 19.878 -13.773 0.536 -2.161 0.910 H8 Z1Z 39 Z1Z H9 H9 H 0 1 N N N 0.512 19.262 -14.064 -1.428 -1.672 -1.375 H9 Z1Z 40 Z1Z H10 H10 H 0 1 N N N 0.060 21.636 -14.355 -1.237 -4.064 -0.627 H10 Z1Z 41 Z1Z H11 H11 H 0 1 N N N -1.157 21.637 -13.033 -1.614 -3.539 1.031 H11 Z1Z 42 Z1Z H12 H12 H 0 1 N N N 0.683 19.325 -11.645 -2.911 -0.826 0.381 H12 Z1Z 43 Z1Z H13 H13 H 0 1 N N N -1.066 19.699 -11.474 -1.698 -1.204 1.631 H13 Z1Z 44 Z1Z H14 H14 H 0 1 N N N -1.725 15.186 -12.259 -3.551 2.728 -1.427 H14 Z1Z 45 Z1Z H15 H15 H 0 1 N N N -0.763 13.701 -12.567 -4.696 2.981 -0.084 H15 Z1Z 46 Z1Z H16 H16 H 0 1 N N N -1.208 14.873 -9.766 -5.926 1.870 -1.851 H16 Z1Z 47 Z1Z H17 H17 H 0 1 N N N -2.277 13.616 -10.477 -4.637 0.657 -2.062 H17 Z1Z 48 Z1Z H18 H18 H 0 1 N N N 0.064 10.691 -7.488 -7.457 -1.505 0.722 H18 Z1Z 49 Z1Z H19 H19 H 0 1 N N N 0.083 10.027 -9.157 -7.394 -0.144 1.867 H19 Z1Z 50 Z1Z H20 H20 H 0 1 N N N 0.822 12.349 -11.654 -4.374 -1.087 -0.004 H20 Z1Z 51 Z1Z H21 H21 H 0 1 N N N 1.720 12.651 -10.128 -5.520 -0.836 1.337 H21 Z1Z 52 Z1Z H22 H22 H 0 1 N N N 1.983 14.218 -12.232 -4.434 1.237 1.973 H22 Z1Z 53 Z1Z H23 H23 H 0 1 N N N 1.998 14.870 -10.559 -3.146 0.024 1.765 H23 Z1Z 54 Z1Z H24 H24 H 0 1 N N N 2.233 10.378 -8.305 -9.647 -0.917 1.527 H24 Z1Z 55 Z1Z H25 H25 H 0 1 N N N 1.970 11.364 -9.580 -9.492 0.619 0.907 H25 Z1Z 56 Z1Z H27 H27 H 0 1 N N N -1.577 17.651 -16.459 2.643 1.353 -0.899 H27 Z1Z 57 Z1Z H28 H28 H 0 1 N N N 0.932 22.354 -12.332 -3.575 -4.208 -0.158 H28 Z1Z 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z1Z CL1 C19 SING N N 1 Z1Z C21 C19 DOUB Y N 2 Z1Z C21 C22 SING Y N 3 Z1Z C19 C17 SING Y N 4 Z1Z C22 C15 DOUB Y N 5 Z1Z C17 F18 SING N N 6 Z1Z C17 C16 DOUB Y N 7 Z1Z C15 C16 SING Y N 8 Z1Z C15 N14 SING N N 9 Z1Z N14 C12 SING N N 10 Z1Z C12 O13 DOUB N N 11 Z1Z C12 C11 SING N N 12 Z1Z C23 C11 SING N N 13 Z1Z C23 C24 SING N N 14 Z1Z C11 C10 SING N N 15 Z1Z C24 C25 SING N N 16 Z1Z C24 C27 SING N N 17 Z1Z C25 O26 SING N N 18 Z1Z C10 N09 SING N N 19 Z1Z C27 N09 SING N N 20 Z1Z N09 C08 SING N N 21 Z1Z C29 N07 SING N N 22 Z1Z C29 C30 SING N N 23 Z1Z C08 N07 SING N N 24 Z1Z C08 O28 DOUB N N 25 Z1Z N07 C06 SING N N 26 Z1Z C06 C05 SING N N 27 Z1Z C05 N04 SING N N 28 Z1Z C30 N04 SING N N 29 Z1Z N04 C03 SING N N 30 Z1Z C03 C02 SING N N 31 Z1Z C03 O31 DOUB N N 32 Z1Z N01 C02 SING N N 33 Z1Z C10 H1 SING N N 34 Z1Z C10 H2 SING N N 35 Z1Z C11 H3 SING N N 36 Z1Z C16 H4 SING N N 37 Z1Z C21 H5 SING N N 38 Z1Z C22 H6 SING N N 39 Z1Z C23 H7 SING N N 40 Z1Z C23 H8 SING N N 41 Z1Z C24 H9 SING N N 42 Z1Z C25 H10 SING N N 43 Z1Z C25 H11 SING N N 44 Z1Z C27 H12 SING N N 45 Z1Z C27 H13 SING N N 46 Z1Z C29 H14 SING N N 47 Z1Z C29 H15 SING N N 48 Z1Z C30 H16 SING N N 49 Z1Z C30 H17 SING N N 50 Z1Z C02 H18 SING N N 51 Z1Z C02 H19 SING N N 52 Z1Z C05 H20 SING N N 53 Z1Z C05 H21 SING N N 54 Z1Z C06 H22 SING N N 55 Z1Z C06 H23 SING N N 56 Z1Z N01 H24 SING N N 57 Z1Z N01 H25 SING N N 58 Z1Z N14 H27 SING N N 59 Z1Z O26 H28 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z1Z SMILES ACDLabs 12.01 "O=C(N1CC(CC(CO)C1)C(=O)Nc1ccc(Cl)c(F)c1)N1CCN(CC1)C(=O)CN" Z1Z InChI InChI 1.06 "InChI=1S/C20H27ClFN5O4/c21-16-2-1-15(8-17(16)22)24-19(30)14-7-13(12-28)10-27(11-14)20(31)26-5-3-25(4-6-26)18(29)9-23/h1-2,8,13-14,28H,3-7,9-12,23H2,(H,24,30)/t13-,14+/m1/s1" Z1Z InChIKey InChI 1.06 IUMJQOWKMYPJNQ-KGLIPLIRSA-N Z1Z SMILES_CANONICAL CACTVS 3.385 "NCC(=O)N1CCN(CC1)C(=O)N2C[C@H](CO)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3" Z1Z SMILES CACTVS 3.385 "NCC(=O)N1CCN(CC1)C(=O)N2C[CH](CO)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3" Z1Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)[C@H]2C[C@H](CN(C2)C(=O)N3CCN(CC3)C(=O)CN)CO)F)Cl" Z1Z SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CC(CN(C2)C(=O)N3CCN(CC3)C(=O)CN)CO)F)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z1Z "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5R)-N-(4-chloro-3-fluorophenyl)-1-(4-glycylpiperazine-1-carbonyl)-5-(hydroxymethyl)piperidine-3-carboxamide" Z1Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-1-[4-(2-azanylethanoyl)piperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-5-(hydroxymethyl)piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z1Z "Create component" 2023-03-06 RCSB Z1Z "Initial release" 2023-06-07 RCSB #