data_Z2C # _chem_comp.id Z2C _chem_comp.name "4-({2-[(1R,2R,3R,5S)-3,5-dihydroxy-2-{(3S)-3-hydroxy-4-[3-(methoxymethyl)phenyl]butyl}cyclopentyl]ethyl}sulfanyl)butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H36 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.593 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z2C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GD9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z2C C3 C1 C 0 1 N N S N N N 112.568 77.218 118.955 2.698 0.949 0.179 C3 Z2C 1 Z2C C4 C2 C 0 1 N N N N N N 111.294 68.650 119.479 -5.573 -2.239 0.100 C4 Z2C 2 Z2C C6 C3 C 0 1 N N R N N N 112.356 73.468 117.061 -0.164 4.256 0.605 C6 Z2C 3 Z2C C7 C4 C 0 1 N N N N N N 113.646 71.719 119.775 -3.032 2.518 -0.558 C7 Z2C 4 Z2C C8 C5 C 0 1 N N R N N N 114.080 72.558 118.524 -1.679 3.103 -0.969 C8 Z2C 5 Z2C C9 C6 C 0 1 N N S N N N 114.202 71.802 117.461 -1.795 4.631 -1.143 C9 Z2C 6 Z2C C12 C7 C 0 1 N N R N N N 112.964 73.783 118.186 -0.642 2.865 0.142 C12 Z2C 7 Z2C C16 C8 C 0 1 N N N N N N 112.521 78.250 120.129 3.737 0.749 1.285 C16 Z2C 8 Z2C C18 C9 C 0 1 Y N N N N N 110.422 77.229 121.124 5.030 -1.316 0.710 C18 Z2C 9 Z2C C20 C10 C 0 1 Y N N N N N 108.389 78.457 121.436 7.180 -1.190 -0.338 C20 Z2C 10 Z2C C22 C11 C 0 1 Y N N N N N 110.320 79.542 120.499 5.989 0.817 0.195 C22 Z2C 11 Z2C C24 C12 C 0 1 N N N N N N 109.681 75.853 124.125 5.706 -5.383 -1.125 C24 Z2C 12 Z2C CAA C13 C 0 1 N N N N N N 112.399 72.336 120.538 -2.938 0.992 -0.521 CAA Z2C 13 Z2C CAB C14 C 0 1 N N N N N N 112.055 69.360 120.641 -4.265 -1.495 -0.178 CAB Z2C 14 Z2C CAC C15 C 0 1 N N N N N N 111.819 67.234 119.233 -5.310 -3.747 0.103 CAC Z2C 15 Z2C OAA O1 O 0 1 N N N N N N 108.442 76.097 123.546 5.672 -3.958 -1.024 OAA Z2C 16 Z2C O1 O2 O 0 1 N N N N N N 109.774 66.503 120.372 -6.608 -5.822 0.426 O1 Z2C 17 Z2C S1 S1 S 0 1 N N N N N N 111.272 71.007 121.020 -4.577 0.293 -0.182 S1 Z2C 18 Z2C C2 C16 C 0 1 N N N N N N 110.819 66.145 119.753 -6.598 -4.480 0.376 C2 Z2C 19 Z2C O2 O3 O 0 1 N N N N N N 111.054 64.912 119.558 -7.621 -3.861 0.550 O2 Z2C 20 Z2C O3 O4 O 0 1 N N N N N N 112.790 77.852 117.760 2.236 -0.324 -0.276 O3 Z2C 21 Z2C O4 O5 O 0 1 N N N N N N 113.710 70.459 117.714 -3.150 5.004 -1.401 O4 Z2C 22 Z2C C5 C17 C 0 1 N N N N N N 113.345 72.492 116.304 -1.325 5.205 0.216 C5 Z2C 23 Z2C O6 O6 O 0 1 N N N N N N 111.082 72.796 117.329 0.042 4.270 2.019 O6 Z2C 24 Z2C C13 C18 C 0 1 N N N N N N 113.746 75.150 117.993 0.538 2.060 -0.407 C13 Z2C 25 Z2C C14 C19 C 0 1 N N N N N N 113.606 76.118 119.214 1.518 1.753 0.728 C14 Z2C 26 Z2C C17 C20 C 0 1 Y N N N N N 111.028 78.357 120.609 4.952 0.065 0.714 C17 Z2C 27 Z2C C19 C21 C 0 1 Y N N N N N 109.103 77.276 121.552 6.145 -1.943 0.186 C19 Z2C 28 Z2C C21 C22 C 0 1 Y N N N N N 108.996 79.593 120.917 7.099 0.190 -0.338 C21 Z2C 29 Z2C C23 C23 C 0 1 N N N N N N 108.440 76.008 122.138 6.233 -3.447 0.187 C23 Z2C 30 Z2C H1 H1 H 0 1 N N N N N N 111.583 76.729 118.925 3.151 1.490 -0.651 H1 Z2C 31 Z2C H2 H2 H 0 1 N N N N N N 111.419 69.240 118.559 -5.965 -1.936 1.070 H2 Z2C 32 Z2C H3 H3 H 0 1 N N N N N N 110.226 68.593 119.736 -6.299 -1.999 -0.677 H3 Z2C 33 Z2C H4 H4 H 0 1 N N N N N N 112.185 74.348 116.423 0.752 4.538 0.084 H4 Z2C 34 Z2C H5 H5 H 0 1 N N N N N N 113.385 70.704 119.442 -3.303 2.890 0.431 H5 Z2C 35 Z2C H6 H6 H 0 1 N N N N N N 114.494 71.669 120.474 -3.792 2.818 -1.280 H6 Z2C 36 Z2C H7 H7 H 0 1 N N N N N N 115.027 73.060 118.770 -1.343 2.646 -1.900 H7 Z2C 37 Z2C H8 H8 H 0 1 N N N N N N 115.246 71.751 117.117 -1.146 4.974 -1.949 H8 Z2C 38 Z2C H9 H9 H 0 1 N N N N N N 112.282 73.871 119.044 -1.102 2.332 0.974 H9 Z2C 39 Z2C H10 H10 H 0 1 N N N N N N 113.157 77.905 120.957 4.023 1.718 1.694 H10 Z2C 40 Z2C H11 H11 H 0 1 N N N N N N 112.874 79.232 119.780 3.311 0.132 2.076 H11 Z2C 41 Z2C H12 H12 H 0 1 N N N N N N 110.977 76.305 121.194 4.222 -1.903 1.119 H12 Z2C 42 Z2C H13 H13 H 0 1 N N N N N N 107.356 78.495 121.750 8.051 -1.680 -0.746 H13 Z2C 43 Z2C H14 H14 H 0 1 N N N N N N 110.795 80.422 120.090 5.928 1.896 0.199 H14 Z2C 44 Z2C H15 H15 H 0 1 N N N N N N 109.599 75.941 125.218 6.740 -5.726 -1.079 H15 Z2C 45 Z2C H16 H16 H 0 1 N N N N N N 110.015 74.838 123.863 5.142 -5.819 -0.301 H16 Z2C 46 Z2C H17 H17 H 0 1 N N N N N N 110.411 76.587 123.752 5.262 -5.691 -2.072 H17 Z2C 47 Z2C H18 H18 H 0 1 N N N N N N 112.745 72.868 121.437 -2.579 0.627 -1.483 H18 Z2C 48 Z2C H19 H19 H 0 1 N N N N N N 111.874 73.040 119.875 -2.244 0.689 0.264 H19 Z2C 49 Z2C H20 H20 H 0 1 N N N N N N 112.018 68.726 121.539 -3.539 -1.735 0.599 H20 Z2C 50 Z2C H21 H21 H 0 1 N N N N N N 113.103 69.516 120.346 -3.873 -1.797 -1.148 H21 Z2C 51 Z2C H22 H22 H 0 1 N N N N N N 111.969 67.093 118.153 -4.918 -4.050 -0.868 H22 Z2C 52 Z2C H23 H23 H 0 1 N N N N N N 112.779 67.114 119.756 -4.583 -3.987 0.880 H23 Z2C 53 Z2C H24 H24 H 0 1 N N N N N N 109.275 65.735 120.622 -7.458 -6.248 0.604 H24 Z2C 54 Z2C H25 H25 H 0 1 N N N N N N 112.132 78.525 117.631 1.820 -0.861 0.412 H25 Z2C 55 Z2C H26 H26 H 0 1 N N N N N N 114.226 70.057 118.403 -3.281 5.955 -1.519 H26 Z2C 56 Z2C H27 H27 H 0 1 N N N N N N 112.784 71.737 115.735 -2.126 5.157 0.954 H27 Z2C 57 Z2C H28 H28 H 0 1 N N N N N N 113.998 73.055 115.621 -0.966 6.228 0.101 H28 Z2C 58 Z2C H29 H29 H 0 1 N N N N N N 110.498 73.392 117.783 0.343 5.121 2.364 H29 Z2C 59 Z2C H30 H30 H 0 1 N N N N N N 114.813 74.925 117.846 0.174 1.127 -0.835 H30 Z2C 60 Z2C H31 H31 H 0 1 N N N N N N 113.351 75.655 117.099 1.046 2.640 -1.178 H31 Z2C 61 Z2C H32 H32 H 0 1 N N N N N N 113.296 75.537 120.095 1.010 1.173 1.499 H32 Z2C 62 Z2C H33 H33 H 0 1 N N N N N N 114.581 76.588 119.409 1.882 2.687 1.156 H33 Z2C 63 Z2C H34 H34 H 0 1 N N N N N N 108.439 80.515 120.838 7.909 0.778 -0.744 H34 Z2C 64 Z2C H35 H35 H 0 1 N N N N N N 107.404 75.932 121.775 5.680 -3.843 1.039 H35 Z2C 65 Z2C H36 H36 H 0 1 N N N N N N 109.005 75.118 121.824 7.277 -3.750 0.260 H36 Z2C 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z2C C5 C6 SING N N 1 Z2C C5 C9 SING N N 2 Z2C C6 O6 SING N N 3 Z2C C6 C12 SING N N 4 Z2C C9 O4 SING N N 5 Z2C C9 C8 SING N N 6 Z2C O3 C3 SING N N 7 Z2C C13 C12 SING N N 8 Z2C C13 C14 SING N N 9 Z2C C12 C8 SING N N 10 Z2C C8 C7 SING N N 11 Z2C C3 C14 SING N N 12 Z2C C3 C16 SING N N 13 Z2C CAC C4 SING N N 14 Z2C CAC C2 SING N N 15 Z2C C4 CAB SING N N 16 Z2C O2 C2 DOUB N N 17 Z2C C2 O1 SING N N 18 Z2C C7 CAA SING N N 19 Z2C C16 C17 SING N N 20 Z2C C22 C17 DOUB Y N 21 Z2C C22 C21 SING Y N 22 Z2C CAA S1 SING N N 23 Z2C C17 C18 SING Y N 24 Z2C CAB S1 SING N N 25 Z2C C21 C20 DOUB Y N 26 Z2C C18 C19 DOUB Y N 27 Z2C C20 C19 SING Y N 28 Z2C C19 C23 SING N N 29 Z2C C23 OAA SING N N 30 Z2C OAA C24 SING N N 31 Z2C C3 H1 SING N N 32 Z2C C4 H2 SING N N 33 Z2C C4 H3 SING N N 34 Z2C C6 H4 SING N N 35 Z2C C7 H5 SING N N 36 Z2C C7 H6 SING N N 37 Z2C C8 H7 SING N N 38 Z2C C9 H8 SING N N 39 Z2C C12 H9 SING N N 40 Z2C C16 H10 SING N N 41 Z2C C16 H11 SING N N 42 Z2C C18 H12 SING N N 43 Z2C C20 H13 SING N N 44 Z2C C22 H14 SING N N 45 Z2C C24 H15 SING N N 46 Z2C C24 H16 SING N N 47 Z2C C24 H17 SING N N 48 Z2C CAA H18 SING N N 49 Z2C CAA H19 SING N N 50 Z2C CAB H20 SING N N 51 Z2C CAB H21 SING N N 52 Z2C CAC H22 SING N N 53 Z2C CAC H23 SING N N 54 Z2C O1 H24 SING N N 55 Z2C O3 H25 SING N N 56 Z2C O4 H26 SING N N 57 Z2C C5 H27 SING N N 58 Z2C C5 H28 SING N N 59 Z2C O6 H29 SING N N 60 Z2C C13 H30 SING N N 61 Z2C C13 H31 SING N N 62 Z2C C14 H32 SING N N 63 Z2C C14 H33 SING N N 64 Z2C C21 H34 SING N N 65 Z2C C23 H35 SING N N 66 Z2C C23 H36 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z2C SMILES ACDLabs 12.01 "OC1CC(O)C(CCC(O)Cc2cccc(COC)c2)C1CCSCCCC(=O)O" Z2C InChI InChI 1.06 "InChI=1S/C23H36O6S/c1-29-15-17-5-2-4-16(12-17)13-18(24)7-8-19-20(22(26)14-21(19)25)9-11-30-10-3-6-23(27)28/h2,4-5,12,18-22,24-26H,3,6-11,13-15H2,1H3,(H,27,28)/t18-,19+,20+,21+,22-/m0/s1" Z2C InChIKey InChI 1.06 UNLPOHHUKUNCNX-POHUPDAJSA-N Z2C SMILES_CANONICAL CACTVS 3.385 "COCc1cccc(C[C@@H](O)CC[C@H]2[C@H](O)C[C@H](O)[C@@H]2CCSCCCC(O)=O)c1" Z2C SMILES CACTVS 3.385 "COCc1cccc(C[CH](O)CC[CH]2[CH](O)C[CH](O)[CH]2CCSCCCC(O)=O)c1" Z2C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCc1cccc(c1)C[C@H](CC[C@H]2[C@@H](C[C@@H]([C@@H]2CCSCCCC(=O)O)O)O)O" Z2C SMILES "OpenEye OEToolkits" 2.0.7 "COCc1cccc(c1)CC(CCC2C(CC(C2CCSCCCC(=O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z2C "SYSTEMATIC NAME" ACDLabs 12.01 "4-({2-[(1R,2R,3R,5S)-3,5-dihydroxy-2-{(3S)-3-hydroxy-4-[3-(methoxymethyl)phenyl]butyl}cyclopentyl]ethyl}sulfanyl)butanoic acid" Z2C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[2-[(1~{R},2~{R},3~{R},5~{S})-2-[(3~{S})-4-[3-(methoxymethyl)phenyl]-3-oxidanyl-butyl]-3,5-bis(oxidanyl)cyclopentyl]ethylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z2C "Create component" 2023-03-06 RCSB Z2C "Initial release" 2024-01-10 RCSB #