data_Z2V # _chem_comp.id Z2V _chem_comp.name "N-[(1R,3S,4R,5S)-3-{(1R)-2-[(2R,4r,6S)-2,6-dihydroxypiperidin-4-yl]-1-hydroxyethyl}-4-hydroxy-1,5-dimethylcyclohexyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H28 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-07 _chem_comp.pdbx_modified_date 2021-08-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z2V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MDZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z2V C02 C1 C 0 1 N N N 208.100 175.641 232.607 -0.270 2.642 0.158 C02 Z2V 1 Z2V C03 C2 C 0 1 N N S 209.007 176.755 233.157 -0.654 1.278 -0.371 C03 Z2V 2 Z2V C04 C3 C 0 1 N N R 210.109 176.262 233.982 -2.010 0.866 0.206 C04 Z2V 3 Z2V C06 C4 C 0 1 N N N 211.265 177.264 233.878 -2.455 -0.453 -0.429 C06 Z2V 4 Z2V C07 C5 C 0 1 N N N 212.523 176.714 234.649 -3.867 -0.798 0.048 C07 Z2V 5 Z2V C08 C6 C 0 1 N N N 213.640 176.456 233.714 -4.859 0.240 -0.487 C08 Z2V 6 Z2V C09 C7 C 0 1 N N N 214.721 175.751 234.487 -6.257 -0.171 -0.108 C09 Z2V 7 Z2V C11 C8 C 0 1 N N N 214.101 177.026 236.458 -5.699 -2.457 -0.107 C11 Z2V 8 Z2V C12 C9 C 0 1 N N N 212.975 177.669 235.674 -4.268 -2.177 -0.486 C12 Z2V 9 Z2V C15 C10 C 0 1 N N N 208.058 177.625 234.029 0.416 0.269 0.058 C15 Z2V 10 Z2V C16 C11 C 0 1 N N R 206.857 178.178 233.247 1.790 0.760 -0.402 C16 Z2V 11 Z2V C18 C12 C 0 1 N N N 204.979 179.738 233.903 4.096 -0.029 -0.382 C18 Z2V 12 Z2V C19 C13 C 0 1 Y N N 204.095 180.275 235.009 5.117 -1.044 -0.047 C19 Z2V 13 Z2V C20 C14 C 0 1 Y N N 204.008 179.561 236.175 6.457 -0.822 -0.369 C20 Z2V 14 Z2V C21 C15 C 0 1 Y N N 203.203 180.064 237.178 7.405 -1.773 -0.053 C21 Z2V 15 Z2V C22 C16 C 0 1 Y N N 202.518 181.259 236.988 7.031 -2.944 0.581 C22 Z2V 16 Z2V C23 C17 C 0 1 Y N N 202.640 181.956 235.791 5.704 -3.170 0.903 C23 Z2V 17 Z2V C24 C18 C 0 1 Y N N 203.445 181.460 234.788 4.747 -2.224 0.599 C24 Z2V 18 Z2V C26 C19 C 0 1 N N N 207.368 179.300 232.276 1.771 0.981 -1.916 C26 Z2V 19 Z2V C27 C20 C 0 1 N N N 206.133 177.136 232.518 2.132 2.076 0.298 C27 Z2V 20 Z2V C28 C21 C 0 1 N N S 207.050 176.307 231.714 1.126 3.153 -0.122 C28 Z2V 21 Z2V C29 C22 C 0 1 N N N 206.197 175.272 230.946 1.376 4.431 0.680 C29 Z2V 22 Z2V N10 N1 N 0 1 N N N 215.219 176.620 235.568 -6.585 -1.462 0.050 N10 Z2V 23 Z2V N17 N2 N 0 1 N N N 205.967 178.732 234.238 2.803 -0.246 -0.069 N17 Z2V 24 Z2V O01 O1 O 0 1 N N N 208.872 174.753 231.868 -1.059 3.308 0.784 O01 Z2V 25 Z2V O05 O2 O 0 1 N N N 209.702 176.221 235.327 -1.894 0.697 1.620 O05 Z2V 26 Z2V O13 O3 O 0 1 N N N 214.560 177.930 237.401 -6.056 -3.603 0.059 O13 Z2V 27 Z2V O14 O4 O 0 1 N N N 215.762 175.408 233.629 -7.103 0.681 0.058 O14 Z2V 28 Z2V O25 O5 O 0 1 N N N 204.850 180.156 232.806 4.422 1.001 -0.940 O25 Z2V 29 Z2V H2 H2 H 0 1 N N N 209.391 177.361 232.323 -0.715 1.311 -1.459 H2 Z2V 30 Z2V H3 H3 H 0 1 N N N 210.443 175.274 233.632 -2.747 1.640 -0.009 H3 Z2V 31 Z2V H4 H4 H 0 1 N N N 211.523 177.414 232.819 -2.453 -0.352 -1.515 H4 Z2V 32 Z2V H5 H5 H 0 1 N N N 210.957 178.223 234.320 -1.768 -1.247 -0.137 H5 Z2V 33 Z2V H6 H6 H 0 1 N N N 212.236 175.770 235.136 -3.893 -0.806 1.138 H6 Z2V 34 Z2V H7 H7 H 0 1 N N N 214.023 177.407 233.314 -4.636 1.215 -0.053 H7 Z2V 35 Z2V H8 H8 H 0 1 N N N 213.296 175.821 232.884 -4.778 0.296 -1.572 H8 Z2V 36 Z2V H11 H11 H 0 1 N N N 213.336 178.590 235.192 -4.170 -2.190 -1.571 H11 Z2V 37 Z2V H12 H12 H 0 1 N N N 212.142 177.911 236.350 -3.621 -2.939 -0.051 H12 Z2V 38 Z2V H13 H13 H 0 1 N N N 207.681 177.008 234.858 0.410 0.172 1.144 H13 Z2V 39 Z2V H14 H14 H 0 1 N N N 208.632 178.472 234.433 0.206 -0.700 -0.395 H14 Z2V 40 Z2V H15 H15 H 0 1 N N N 204.550 178.636 236.305 6.751 0.091 -0.865 H15 Z2V 41 Z2V H16 H16 H 0 1 N N N 203.105 179.529 238.111 8.443 -1.604 -0.303 H16 Z2V 42 Z2V H17 H17 H 0 1 N N N 201.888 181.648 237.774 7.777 -3.685 0.826 H17 Z2V 43 Z2V H18 H18 H 0 1 N N N 202.105 182.883 235.648 5.418 -4.086 1.398 H18 Z2V 44 Z2V H19 H19 H 0 1 N N N 203.560 181.991 233.854 3.713 -2.400 0.855 H19 Z2V 45 Z2V H20 H20 H 0 1 N N N 207.907 180.067 232.852 1.016 1.727 -2.164 H20 Z2V 46 Z2V H21 H21 H 0 1 N N N 208.045 178.859 231.530 2.750 1.330 -2.244 H21 Z2V 47 Z2V H22 H22 H 0 1 N N N 206.510 179.761 231.765 1.533 0.043 -2.417 H22 Z2V 48 Z2V H23 H23 H 0 1 N N N 205.400 177.610 231.849 2.085 1.936 1.378 H23 Z2V 49 Z2V H24 H24 H 0 1 N N N 205.608 176.493 233.240 3.138 2.388 0.016 H24 Z2V 50 Z2V H25 H25 H 0 1 N N N 207.567 176.943 230.981 1.234 3.358 -1.187 H25 Z2V 51 Z2V H26 H26 H 0 1 N N N 206.854 174.636 230.335 2.388 4.788 0.489 H26 Z2V 52 Z2V H27 H27 H 0 1 N N N 205.646 174.647 231.664 0.659 5.195 0.379 H27 Z2V 53 Z2V H28 H28 H 0 1 N N N 205.484 175.797 230.293 1.259 4.222 1.743 H28 Z2V 54 Z2V H29 H29 H 0 1 N N N 216.173 176.897 235.686 -7.498 -1.686 0.288 H29 Z2V 55 Z2V H31 H31 H 0 1 N N N 206.034 178.413 235.183 2.542 -1.067 0.375 H31 Z2V 56 Z2V H33 H33 H 0 1 N N N 210.417 175.901 235.865 -1.254 0.023 1.885 H33 Z2V 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z2V C29 C28 SING N N 1 Z2V C28 C27 SING N N 2 Z2V C28 C02 SING N N 3 Z2V O01 C02 DOUB N N 4 Z2V C26 C16 SING N N 5 Z2V C27 C16 SING N N 6 Z2V C02 C03 SING N N 7 Z2V O25 C18 DOUB N N 8 Z2V C03 C04 SING N N 9 Z2V C03 C15 SING N N 10 Z2V C16 C15 SING N N 11 Z2V C16 N17 SING N N 12 Z2V O14 C09 DOUB N N 13 Z2V C08 C09 SING N N 14 Z2V C08 C07 SING N N 15 Z2V C06 C04 SING N N 16 Z2V C06 C07 SING N N 17 Z2V C18 N17 SING N N 18 Z2V C18 C19 SING N N 19 Z2V C04 O05 SING N N 20 Z2V C09 N10 SING N N 21 Z2V C07 C12 SING N N 22 Z2V C24 C19 DOUB Y N 23 Z2V C24 C23 SING Y N 24 Z2V C19 C20 SING Y N 25 Z2V N10 C11 SING N N 26 Z2V C12 C11 SING N N 27 Z2V C23 C22 DOUB Y N 28 Z2V C20 C21 DOUB Y N 29 Z2V C11 O13 DOUB N N 30 Z2V C22 C21 SING Y N 31 Z2V C03 H2 SING N N 32 Z2V C04 H3 SING N N 33 Z2V C06 H4 SING N N 34 Z2V C06 H5 SING N N 35 Z2V C07 H6 SING N N 36 Z2V C08 H7 SING N N 37 Z2V C08 H8 SING N N 38 Z2V C12 H11 SING N N 39 Z2V C12 H12 SING N N 40 Z2V C15 H13 SING N N 41 Z2V C15 H14 SING N N 42 Z2V C20 H15 SING N N 43 Z2V C21 H16 SING N N 44 Z2V C22 H17 SING N N 45 Z2V C23 H18 SING N N 46 Z2V C24 H19 SING N N 47 Z2V C26 H20 SING N N 48 Z2V C26 H21 SING N N 49 Z2V C26 H22 SING N N 50 Z2V C27 H23 SING N N 51 Z2V C27 H24 SING N N 52 Z2V C28 H25 SING N N 53 Z2V C29 H26 SING N N 54 Z2V C29 H27 SING N N 55 Z2V C29 H28 SING N N 56 Z2V N10 H29 SING N N 57 Z2V N17 H31 SING N N 58 Z2V O05 H33 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z2V SMILES ACDLabs 12.01 "O=C1CC(CC(O)C2CC(C)(NC(=O)c3ccccc3)CC(C)C2=O)CC(=O)N1" Z2V InChI InChI 1.03 "InChI=1S/C22H28N2O5/c1-13-11-22(2,24-21(29)15-6-4-3-5-7-15)12-16(20(13)28)17(25)8-14-9-18(26)23-19(27)10-14/h3-7,13-14,16-17,25H,8-12H2,1-2H3,(H,24,29)(H,23,26,27)/t13-,16-,17+,22+/m0/s1" Z2V InChIKey InChI 1.03 HNMIURKVBYLOSU-NYGMARBTSA-N Z2V SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@](C)(C[C@@H]([C@H](O)CC2CC(=O)NC(=O)C2)C1=O)NC(=O)c3ccccc3" Z2V SMILES CACTVS 3.385 "C[CH]1C[C](C)(C[CH]([CH](O)CC2CC(=O)NC(=O)C2)C1=O)NC(=O)c3ccccc3" Z2V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@@](C[C@H](C1=O)[C@@H](CC2CC(=O)NC(=O)C2)O)(C)NC(=O)c3ccccc3" Z2V SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(CC(C1=O)C(CC2CC(=O)NC(=O)C2)O)(C)NC(=O)c3ccccc3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z2V "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1R,3S,5S)-3-[(1R)-2-(2,6-dioxopiperidin-4-yl)-1-hydroxyethyl]-1,5-dimethyl-4-oxocyclohexyl}benzamide" Z2V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R},3~{S},5~{S})-3-[(1~{R})-2-[2,6-bis(oxidanylidene)piperidin-4-yl]-1-oxidanyl-ethyl]-1,5-dimethyl-4-oxidanylidene-cyclohexyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z2V "Create component" 2021-04-07 RCSB Z2V "Initial release" 2021-09-01 RCSB ##