data_Z3U # _chem_comp.id Z3U _chem_comp.name beta-D-Digitoxopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;beta-D-Digitoxose; 2,6-dideoxy-beta-D-ribo-hexopyranose; 2,6-dideoxy-beta-D-allopyranose; 2,6-dideoxy-beta-D-altropyranose; D-Digitoxose; Digitoxose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-17 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z3U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3B0W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 Z3U beta-D-Digitoxose PDB ? 2 Z3U "2,6-dideoxy-beta-D-ribo-hexopyranose" PDB ? 3 Z3U "2,6-dideoxy-beta-D-allopyranose" PDB ? 4 Z3U "2,6-dideoxy-beta-D-altropyranose" PDB ? 5 Z3U D-Digitoxose PDB ? 6 Z3U Digitoxose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z3U C1 C1 C 0 1 N N R 38.670 19.795 -6.436 1.603 0.042 -0.229 C1 Z3U 1 Z3U C2 C2 C 0 1 N N N 39.706 19.974 -7.562 1.114 -1.089 0.680 C2 Z3U 2 Z3U C3 C3 C 0 1 N N S 41.084 20.350 -6.996 -0.357 -1.383 0.370 C3 Z3U 3 Z3U C4 C4 C 0 1 N N S 40.964 21.598 -6.097 -1.172 -0.099 0.550 C4 Z3U 4 Z3U C5 C5 C 0 1 N N R 40.017 21.284 -4.922 -0.595 0.993 -0.354 C5 Z3U 5 Z3U C6 C6 C 0 1 N N N 39.810 22.549 -4.075 -1.367 2.296 -0.136 C6 Z3U 6 Z3U O1 O1 O 0 1 N Y N 37.375 19.805 -7.069 2.958 0.361 0.093 O1 Z3U 7 Z3U O3 O3 O 0 1 N N N 41.603 19.241 -6.251 -0.479 -1.842 -0.978 O3 Z3U 8 Z3U O4 O4 O 0 1 N N N 42.257 22.002 -5.617 -2.534 -0.344 0.193 O4 Z3U 9 Z3U O5 O5 O 0 1 N N N 38.744 20.828 -5.418 0.783 1.196 -0.034 O5 Z3U 10 Z3U H1 H1 H 0 1 N N N 38.840 18.814 -5.969 1.541 -0.276 -1.270 H1 Z3U 11 Z3U HO1 H1O H 0 1 N Y N 36.699 19.697 -6.410 3.334 1.071 -0.445 HO1 Z3U 12 Z3U H21 H21 H 0 1 N N N 39.793 19.031 -8.122 1.710 -1.983 0.501 H21 Z3U 13 Z3U H22 H22 H 0 1 N N N 39.366 20.772 -8.238 1.213 -0.787 1.722 H22 Z3U 14 Z3U H3 H3 H 0 1 N N N 41.755 20.587 -7.835 -0.726 -2.150 1.050 H3 Z3U 15 Z3U HO3 H3O H 0 1 N Y N 42.456 19.467 -5.898 0.019 -2.649 -1.166 HO3 Z3U 16 Z3U H4 H4 H 0 1 N N N 40.519 22.410 -6.691 -1.120 0.222 1.590 H4 Z3U 17 Z3U HO4 H4O H 0 1 N Y N 42.165 22.770 -5.066 -2.962 -1.030 0.723 HO4 Z3U 18 Z3U H5 H5 H 0 1 N N N 40.478 20.508 -4.294 -0.685 0.688 -1.397 H5 Z3U 19 Z3U H62 H61 H 0 1 N N N 40.779 22.890 -3.682 -2.418 2.141 -0.379 H62 Z3U 20 Z3U H61 H62 H 0 1 N N N 39.134 22.323 -3.237 -1.276 2.602 0.906 H61 Z3U 21 Z3U H63 H63 H 0 1 N N N 39.369 23.340 -4.699 -0.956 3.074 -0.780 H63 Z3U 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z3U C1 C2 SING N N 1 Z3U C1 O1 SING N N 2 Z3U C1 O5 SING N N 3 Z3U C1 H1 SING N N 4 Z3U C2 C3 SING N N 5 Z3U C2 H21 SING N N 6 Z3U C2 H22 SING N N 7 Z3U C3 O3 SING N N 8 Z3U C3 C4 SING N N 9 Z3U C3 H3 SING N N 10 Z3U C4 O4 SING N N 11 Z3U C4 H4 SING N N 12 Z3U C4 C5 SING N N 13 Z3U C5 H5 SING N N 14 Z3U C5 C6 SING N N 15 Z3U C5 O5 SING N N 16 Z3U C6 H61 SING N N 17 Z3U C6 H62 SING N N 18 Z3U C6 H63 SING N N 19 Z3U O1 HO1 SING N N 20 Z3U O3 HO3 SING N N 21 Z3U O4 HO4 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z3U SMILES ACDLabs 12.01 "OC1C(OC(O)CC1O)C" Z3U InChI InChI 1.03 "InChI=1S/C6H12O4/c1-3-6(9)4(7)2-5(8)10-3/h3-9H,2H2,1H3/t3-,4+,5-,6-/m1/s1" Z3U InChIKey InChI 1.03 FDWRIIDFYSUTDP-JGWLITMVSA-N Z3U SMILES_CANONICAL CACTVS 3.370 "C[C@H]1O[C@@H](O)C[C@H](O)[C@@H]1O" Z3U SMILES CACTVS 3.370 "C[CH]1O[CH](O)C[CH](O)[CH]1O" Z3U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H]([C@H](C[C@@H](O1)O)O)O" Z3U SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(CC(O1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z3U "SYSTEMATIC NAME" ACDLabs 12.01 "2,6-dideoxy-beta-D-ribo-hexopyranose" Z3U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4S,5S,6R)-6-methyloxane-2,4,5-triol" Z3U "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DDigb Z3U "COMMON NAME" GMML 1.0 b-D-Digitoxopyranose Z3U "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Dig Z3U "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "b-D-2,6-deoxy-Allp" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z3U "CARBOHYDRATE ISOMER" D PDB ? Z3U "CARBOHYDRATE RING" pyranose PDB ? Z3U "CARBOHYDRATE ANOMER" beta PDB ? Z3U "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z3U "Create component" 2012-12-17 RCSB Z3U "Modify atom id" 2013-04-14 RCSB Z3U "Other modification" 2019-08-12 RCSB Z3U "Other modification" 2019-12-19 RCSB Z3U "Other modification" 2020-06-03 RCSB Z3U "Other modification" 2020-06-10 RCSB Z3U "Other modification" 2020-07-03 RCSB Z3U "Modify atom id" 2020-07-17 RCSB Z3U "Modify component atom id" 2020-07-17 RCSB Z3U "Initial release" 2020-07-29 RCSB ##